Sphk1 (sphingosine kinase 1) - Rat Genome Database

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Gene: Sphk1 (sphingosine kinase 1) Mus musculus
Analyze
Symbol: Sphk1
Name: sphingosine kinase 1
RGD ID: 733320
MGI Page MGI
Description: Enables D-erythro-sphingosine kinase activity; acetyltransferase activity; and sphinganine kinase activity. Involved in several processes, including negative regulation of ceramide biosynthetic process; regulation of microglial cell activation; and regulation of vesicle-mediated transport. Acts upstream of or within several processes, including cellular response to hydrogen peroxide; positive regulation of mitotic nuclear division; and sphingolipid mediated signaling pathway. Located in endocytic vesicle; nucleus; and presynapse. Is expressed in several structures, including genitourinary system; heart; liver; lung; and spleen. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human SPHK1 (sphingosine kinase 1).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 1110006G24Rik; acetyltransferase SPHK1; SK; SK 1; SK1; SPK 1; Spk1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,421,662 - 116,427,502 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,421,751 - 116,427,501 (+)EnsemblGRCm39 Ensembl
GRCm3811116,530,836 - 116,536,675 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,530,925 - 116,536,674 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,530,925 - 116,536,675 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711116,393,225 - 116,397,989 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611116,349,437 - 116,352,760 (+)NCBIMGSCv36mm8
Celera11128,300,450 - 128,305,214 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1181.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dihydromyricetin  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxy-17beta-estradiol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
4-nitrophenol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
albendazole  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
apigenin  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
bortezomib  (ISO)
butan-1-ol  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
cannabidiol  (EXP)
carbon nanotube  (EXP,ISO)
cefaloridine  (ISO)
chlorpyrifos  (ISO)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (EXP,ISO)
D-glucose  (ISO)
dexamethasone  (EXP)
dextran sulfate  (EXP,ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (EXP)
divanadium pentaoxide  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
ethanol  (ISO)
folic acid  (EXP)
fumonisin B1  (EXP)
furan  (ISO)
gentamycin  (ISO)
glucose  (ISO)
hesperidin  (ISO)
irinotecan  (ISO)
isobutanol  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
kaempferol  (EXP,ISO)
ketoconazole  (ISO)
L-methionine  (EXP)
Licochalcone B  (ISO)
lipopolysaccharide  (EXP,ISO)
menadione  (ISO)
methotrexate  (ISO)
methylmercury(1+)  (ISO)
mifepristone  (ISO)
N,N-dimethylsphingosine  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
NAD zwitterion  (ISO)
NAD(+)  (ISO)
naphthalene  (EXP)
nickel atom  (EXP)
nickel sulfate  (ISO)
ochratoxin A  (ISO)
onapristone  (ISO)
ouabain  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl caffeate  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phosgene  (EXP)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
progesterone  (ISO)
prothioconazole  (ISO)
pyridoxamine  (ISO)
ranitidine  (ISO)
resveratrol  (EXP,ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
sphingosine 1-phosphate  (ISO)
streptozocin  (EXP,ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
tributylstannane  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
blood vessel development  (IGI)
brain development  (IGI)
calcium-mediated signaling  (ISO)
cell population proliferation  (IGI)
cellular response to growth factor stimulus  (IBA,ISO)
cellular response to hydrogen peroxide  (IDA,ISO)
cellular response to starvation  (ISO)
cellular response to vascular endothelial growth factor stimulus  (IDA,ISO)
cyclooxygenase pathway  (ISO)
DNA biosynthetic process  (IMP)
female pregnancy  (ISO)
inflammatory response  (IMP)
lipid metabolic process  (IEA)
negative regulation of apoptotic process  (IBA,IDA,ISO)
negative regulation of ceramide biosynthetic process  (IMP,ISO)
positive regulation of angiogenesis  (ISO)
positive regulation of cell growth  (ISO)
positive regulation of cell migration  (ISO)
positive regulation of cell population proliferation  (IGI)
positive regulation of fibroblast proliferation  (ISO)
positive regulation of interleukin-17 production  (ISO)
positive regulation of mitotic cell cycle  (ISO)
positive regulation of mitotic nuclear division  (IGI)
positive regulation of neuron projection development  (ISO)
positive regulation of neurotransmitter secretion  (ISO)
positive regulation of non-canonical NF-kappaB signal transduction  (ISO)
positive regulation of p38MAPK cascade  (ISO)
positive regulation of peptidyl-threonine phosphorylation  (ISO)
positive regulation of protein phosphorylation  (ISO)
positive regulation of protein ubiquitination  (ISO)
positive regulation of smooth muscle contraction  (ISO)
regulation of endocytosis  (IMP,ISO)
regulation of endosomal vesicle fusion  (IMP)
regulation of interleukin-1 beta production  (IMP)
regulation of microglial cell activation  (IMP)
regulation of neuroinflammatory response  (IMP,ISO)
regulation of phagocytosis  (IMP)
regulation of tumor necrosis factor-mediated signaling pathway  (ISO)
response to amine  (ISO)
response to ATP  (ISO)
response to interleukin-1  (ISO)
response to magnesium ion  (ISO)
response to organic cyclic compound  (ISO)
response to progesterone  (ISO)
response to tumor necrosis factor  (ISO)
sphingolipid mediated signaling pathway  (IDA)
sphingosine biosynthetic process  (IBA,ISO)
sphingosine metabolic process  (ISO)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood vessel morphology  (IAGP)
abnormal cytokine level  (IAGP)
abnormal dorsal aorta morphology  (IAGP)
abnormal embryonic neuroepithelium morphology  (IAGP)
abnormal heart morphology  (IEA)
abnormal immune serum protein physiology  (IAGP)
abnormal kidney morphology  (IEA)
abnormal leukocyte migration  (IAGP)
abnormal lymph node morphology  (IAGP)
abnormal lymphatic vessel morphology  (IAGP)
abnormal lymphocyte cell number  (IAGP)
abnormal myocardial fiber physiology  (IAGP)
abnormal NK cell differentiation  (IAGP)
abnormal Peyer's patch T cell area morphology  (IAGP)
abnormal skin morphology  (IEA)
abnormal spleen morphology  (IEA)
abnormal T cell differentiation  (IAGP)
abnormal thymus cell ratio  (IAGP)
abnormal vascular endothelial cell morphology  (IAGP)
abnormal vascular smooth muscle morphology  (IAGP)
abnormal vitreous body morphology  (IEA)
cataract  (IEA)
decreased B cell number  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased embryonic neuroepithelium thickness  (IAGP)
decreased NK cell number  (IAGP)
decreased splenocyte number  (IAGP)
decreased susceptibility to endotoxin shock  (IAGP)
decreased susceptibility to induced morbidity/mortality  (IAGP)
decreased T cell number  (IAGP)
dilated brain ventricle  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
enlarged heart  (IEA)
enlarged mesenteric lymph nodes  (IAGP)
enlarged spleen  (IEA)
exencephaly  (IAGP)
hemopericardium  (IAGP)
hemorrhage  (IAGP)
incomplete rostral neuropore closure  (IAGP)
increased B cell number  (IAGP)
increased embryonic neuroepithelium apoptosis  (IAGP)
increased hindbrain apoptosis  (IAGP)
increased midbrain apoptosis  (IAGP)
increased NK cell number  (IAGP)
increased vascular permeability  (IAGP)
intracranial hemorrhage  (IAGP)
intraventricular hemorrhage  (IAGP)
no abnormal phenotype detected  (IAGP)
small kidney  (IEA)
spinal hemorrhage  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Sphingosine kinase 1 is up-regulated in colon carcinogenesis. Kawamori T, etal., FASEB J. 2006 Feb;20(2):386-8. Epub 2005 Nov 30.
3. Sphingosine kinase 1 participates in insulin signalling and regulates glucose metabolism and homeostasis in KK/Ay diabetic mice. Ma MM, etal., Diabetologia. 2007 Apr;50(4):891-900. Epub 2007 Jan 31.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Modulation of P-glycoprotein function by sphingosine kinase-1 in brain endothelial cells. Pilorget A, etal., J Neurochem. 2007 Mar;100(5):1203-10.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9726979   PMID:10349636   PMID:10751414   PMID:10802064   PMID:11042159   PMID:11076861   PMID:12391145   PMID:12477932   PMID:12943676   PMID:12963721   PMID:14689477   PMID:15196915  
PMID:15310762   PMID:15314148   PMID:15367693   PMID:15451787   PMID:15459201   PMID:15581625   PMID:15585953   PMID:15782199   PMID:15890687   PMID:15927078   PMID:15938718   PMID:16118219  
PMID:16141072   PMID:16141073   PMID:16223773   PMID:16272312   PMID:16314531   PMID:16316995   PMID:16368679   PMID:16434032   PMID:16622018   PMID:16623665   PMID:16876794   PMID:16888242  
PMID:16960033   PMID:16980623   PMID:17200676   PMID:17292973   PMID:17320845   PMID:17322125   PMID:17346996   PMID:17363629   PMID:17388800   PMID:17512943   PMID:17519232   PMID:17610857  
PMID:17641298   PMID:17643421   PMID:17654519   PMID:17885683   PMID:17898040   PMID:18166496   PMID:18199826   PMID:18305483   PMID:18322246   PMID:18334546   PMID:18424450   PMID:18574469  
PMID:18783337   PMID:18805787   PMID:18815359   PMID:18824518   PMID:18849324   PMID:18971925   PMID:18983913   PMID:19017993   PMID:19020339   PMID:19073640   PMID:19074308   PMID:19109558  
PMID:19162217   PMID:19168577   PMID:19228708   PMID:19234089   PMID:19596980   PMID:19603543   PMID:19657322   PMID:19665772   PMID:19696411   PMID:19755413   PMID:19808259   PMID:19830907  
PMID:19835973   PMID:19884258   PMID:19932089   PMID:19965613   PMID:20026661   PMID:20036321   PMID:20053797   PMID:20089836   PMID:20123033   PMID:20194596   PMID:20299461   PMID:20407207  
PMID:20498849   PMID:20502675   PMID:20530543   PMID:20577214   PMID:20644167   PMID:20661259   PMID:20671234   PMID:20950672   PMID:20959514   PMID:20962114   PMID:21084291   PMID:21209394  
PMID:21256823   PMID:21319224   PMID:21331079   PMID:21435724   PMID:21642988   PMID:21765468   PMID:21849969   PMID:21864273   PMID:21873635   PMID:21960637   PMID:22020265   PMID:22049516  
PMID:22095950   PMID:22096531   PMID:22279055   PMID:22298596   PMID:22322303   PMID:22355325   PMID:22563011   PMID:22606350   PMID:22606352   PMID:22615770   PMID:22668972   PMID:22695326  
PMID:22707406   PMID:22747486   PMID:22750505   PMID:22759398   PMID:22833671   PMID:22859402   PMID:22922818   PMID:23028939   PMID:23096701   PMID:23109673   PMID:23315259   PMID:23328083  
PMID:23359503   PMID:23466305   PMID:23638983   PMID:23651497   PMID:23766515   PMID:23771672   PMID:23775711   PMID:23839903   PMID:23839933   PMID:23892195   PMID:23893239   PMID:23904439  
PMID:23933064   PMID:23935096   PMID:23995678   PMID:24081141   PMID:24473437   PMID:24667638   PMID:24743591   PMID:24837436   PMID:24929359   PMID:25002116   PMID:25131845   PMID:25150253  
PMID:25176316   PMID:25180446   PMID:25231106   PMID:25250575   PMID:25253697   PMID:25415609   PMID:25417698   PMID:25457224   PMID:25460165   PMID:25490466   PMID:25505239   PMID:25587035  
PMID:25797575   PMID:25801013   PMID:25832730   PMID:25871850   PMID:25895971   PMID:25908104   PMID:26129975   PMID:26183376   PMID:26240153   PMID:26283908   PMID:26316271   PMID:26482537  
PMID:26541871   PMID:26615875   PMID:26631960   PMID:26676341   PMID:26701909   PMID:26730154   PMID:26775841   PMID:26903652   PMID:26948947   PMID:26972502   PMID:27050145   PMID:27148053  
PMID:27343196   PMID:27417539   PMID:27487469   PMID:27582371   PMID:27664902   PMID:27799486   PMID:27801960   PMID:27806293   PMID:28049734   PMID:28082452   PMID:28174291   PMID:28248965  
PMID:28276483   PMID:28583134   PMID:28706199   PMID:28733250   PMID:28739604   PMID:28789830   PMID:28842426   PMID:28968647   PMID:29028945   PMID:29039449   PMID:29044125   PMID:29167124  
PMID:29208982   PMID:29438518   PMID:29572892   PMID:29662056   PMID:29673590   PMID:29787576   PMID:30251698   PMID:30540948   PMID:30655318   PMID:30963576   PMID:30963819   PMID:30997640  
PMID:31027910   PMID:31068790   PMID:31154460   PMID:31160320   PMID:31412253   PMID:31416077   PMID:31483837   PMID:31638192   PMID:31675530   PMID:31776862   PMID:31797978   PMID:31971297  
PMID:32091396   PMID:32108663   PMID:32209471   PMID:32246175   PMID:32278723   PMID:32393187   PMID:32521763   PMID:32610129   PMID:32690594   PMID:32696422   PMID:32764262   PMID:32771459  
PMID:32897877   PMID:33208918   PMID:33281190   PMID:33334894   PMID:33525436   PMID:33566377   PMID:33640975   PMID:33807180   PMID:34043703   PMID:34268882   PMID:34479994   PMID:34618403  
PMID:35671973   PMID:35682566   PMID:35796424   PMID:36361636   PMID:36396932   PMID:36498853   PMID:36622069   PMID:37185099   PMID:37751791   PMID:37773702   PMID:37830619   PMID:38200582  
PMID:38218310  


Genomics

Comparative Map Data
Sphk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,421,662 - 116,427,502 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,421,751 - 116,427,501 (+)EnsemblGRCm39 Ensembl
GRCm3811116,530,836 - 116,536,675 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,530,925 - 116,536,674 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,530,925 - 116,536,675 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711116,393,225 - 116,397,989 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611116,349,437 - 116,352,760 (+)NCBIMGSCv36mm8
Celera11128,300,450 - 128,305,214 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1181.42NCBI
SPHK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381776,383,204 - 76,387,855 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1776,376,584 - 76,387,860 (+)EnsemblGRCh38hg38GRCh38
GRCh371774,379,285 - 74,383,936 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,892,297 - 71,895,536 (+)NCBINCBI36Build 36hg18NCBI36
Build 341771,892,325 - 71,895,530NCBI
Celera1770,973,067 - 70,976,318 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,809,173 - 69,812,424 (+)NCBIHuRef
CHM1_11774,445,769 - 74,449,020 (+)NCBICHM1_1
T2T-CHM13v2.01777,279,777 - 77,284,428 (+)NCBIT2T-CHM13v2.0
Sphk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,257,413 - 102,263,086 (+)NCBIGRCr8
mRatBN7.210101,758,567 - 101,764,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,758,711 - 101,764,240 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10106,815,189 - 106,820,851 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,278,279 - 106,283,941 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,679,445 - 101,685,112 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010105,498,728 - 105,504,401 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10105,498,728 - 105,504,393 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010105,162,314 - 105,167,987 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,641,509 - 106,645,579 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110106,656,012 - 106,660,081 (+)NCBI
Celera10100,330,875 - 100,336,542 (+)NCBICelera
Cytogenetic Map10q32.1-q32.2NCBI
Sphk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555065,902,345 - 5,904,988 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555065,902,079 - 5,906,639 (-)NCBIChiLan1.0ChiLan1.0
SPHK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21992,424,277 - 92,430,882 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11797,251,477 - 97,256,099 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01770,331,370 - 70,336,043 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,875,530 - 75,886,481 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,883,329 - 75,886,481 (+)Ensemblpanpan1.1panPan2
SPHK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,311,698 - 4,314,773 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,311,683 - 4,314,483 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha94,992,955 - 4,996,576 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.094,984,498 - 4,988,116 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl94,984,483 - 4,987,049 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,012,727 - 5,016,344 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,132,520 - 5,136,143 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,213,806 - 5,217,418 (-)NCBIUU_Cfam_GSD_1.0
Sphk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056024,922,623 - 4,928,472 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,486,111 - 1,489,188 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,482,830 - 1,489,337 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPHK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,114,947 - 5,120,083 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,114,946 - 5,122,580 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,018,690 - 5,023,812 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPHK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,290,147 - 45,295,175 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,290,421 - 45,293,128 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607716,031,997 - 16,036,965 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sphk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248016,253,219 - 6,257,128 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sphk1
233 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2423
Count of miRNA genes:529
Interacting mature miRNAs:631
Transcripts:ENSMUST00000063396, ENSMUST00000063446, ENSMUST00000100201, ENSMUST00000106386, ENSMUST00000106387, ENSMUST00000106388, ENSMUST00000124682, ENSMUST00000134834, ENSMUST00000136526, ENSMUST00000138840, ENSMUST00000141798, ENSMUST00000145737, ENSMUST00000148185, ENSMUST00000150658, ENSMUST00000154034, ENSMUST00000155102
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse

Markers in Region
Sphk1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811116,535,710 - 116,536,216UniSTSGRCm38
MGSCv3711116,397,024 - 116,397,530UniSTSGRCm37
Celera11128,304,249 - 128,304,755UniSTS
Cytogenetic Map11E2UniSTS
cM Map11 UniSTS
UniSTS:236783  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811116,535,814 - 116,535,927UniSTSGRCm38
MGSCv3711116,397,128 - 116,397,241UniSTSGRCm37
Celera11128,304,353 - 128,304,466UniSTS
Cytogenetic Map11E2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001172472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001172473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001172475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF068748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF068749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF415213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000063396   ⟹   ENSMUSP00000064743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,423,751 - 116,427,483 (+)Ensembl
GRCm38.p6 Ensembl11116,532,925 - 116,536,657 (+)Ensembl
RefSeq Acc Id: ENSMUST00000063446   ⟹   ENSMUSP00000067865
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,423,299 - 116,427,500 (+)Ensembl
GRCm38.p6 Ensembl11116,532,473 - 116,536,674 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100201   ⟹   ENSMUSP00000097775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,422,737 - 116,427,496 (+)Ensembl
GRCm38.p6 Ensembl11116,531,911 - 116,536,670 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106386   ⟹   ENSMUSP00000101994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,423,270 - 116,427,500 (+)Ensembl
GRCm38.p6 Ensembl11116,532,444 - 116,536,674 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106387   ⟹   ENSMUSP00000101995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,422,570 - 116,427,483 (+)Ensembl
GRCm38.p6 Ensembl11116,531,744 - 116,536,657 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106388   ⟹   ENSMUSP00000101996
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,421,751 - 116,427,483 (+)Ensembl
GRCm38.p6 Ensembl11116,530,925 - 116,536,657 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124682   ⟹   ENSMUSP00000116055
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,424,401 - 116,426,524 (+)Ensembl
GRCm38.p6 Ensembl11116,533,575 - 116,535,698 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,423,277 - 116,427,494 (+)Ensembl
GRCm38.p6 Ensembl11116,532,451 - 116,536,668 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,421,988 - 116,426,110 (+)Ensembl
GRCm38.p6 Ensembl11116,531,162 - 116,535,284 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138840   ⟹   ENSMUSP00000121064
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,421,947 - 116,426,526 (+)Ensembl
GRCm38.p6 Ensembl11116,531,121 - 116,535,700 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141798   ⟹   ENSMUSP00000131010
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,425,566 - 116,427,501 (+)Ensembl
GRCm38.p6 Ensembl11116,534,740 - 116,536,675 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145737   ⟹   ENSMUSP00000114622
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,423,280 - 116,426,538 (+)Ensembl
GRCm38.p6 Ensembl11116,532,454 - 116,535,712 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148185
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,424,986 - 116,426,114 (+)Ensembl
GRCm38.p6 Ensembl11116,534,160 - 116,535,288 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150658
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,424,077 - 116,426,462 (+)Ensembl
GRCm38.p6 Ensembl11116,533,251 - 116,535,636 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154034   ⟹   ENSMUSP00000121219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,424,094 - 116,426,821 (+)Ensembl
GRCm38.p6 Ensembl11116,533,268 - 116,535,995 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155102   ⟹   ENSMUSP00000114819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,423,283 - 116,426,167 (+)Ensembl
GRCm38.p6 Ensembl11116,532,457 - 116,535,341 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11116,425,566 - 116,427,496 (+)Ensembl
GRCm38.p6 Ensembl11116,534,740 - 116,536,670 (+)Ensembl
RefSeq Acc Id: NM_001172472   ⟹   NP_001165943
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,423,277 - 116,427,496 (+)NCBI
GRCm3811116,532,451 - 116,536,670 (+)NCBI
MGSCv3711116,393,225 - 116,397,989 (+)RGD
Celera11128,300,450 - 128,305,214 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001172473   ⟹   NP_001165944
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,423,270 - 116,427,501 (+)NCBI
GRCm3811116,532,444 - 116,536,675 (+)NCBI
MGSCv3711116,393,225 - 116,397,989 (+)RGD
Celera11128,300,450 - 128,305,214 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001172475   ⟹   NP_001165946
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,422,737 - 116,427,501 (+)NCBI
GRCm3811116,531,911 - 116,536,675 (+)NCBI
MGSCv3711116,393,225 - 116,397,989 (+)RGD
Celera11128,300,450 - 128,305,214 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001372484   ⟹   NP_001359413
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,421,926 - 116,427,496 (+)NCBI
GRCm3811116,531,100 - 116,536,670 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001372485   ⟹   NP_001359414
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,421,926 - 116,427,496 (+)NCBI
GRCm3811116,531,100 - 116,536,670 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001372486   ⟹   NP_001359415
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,422,663 - 116,427,496 (+)NCBI
GRCm3811116,531,837 - 116,536,670 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001372487   ⟹   NP_001359416
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,423,277 - 116,427,496 (+)NCBI
GRCm3811116,532,451 - 116,536,670 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001372488   ⟹   NP_001359417
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,423,277 - 116,427,496 (+)NCBI
GRCm3811116,532,451 - 116,536,670 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001372489   ⟹   NP_001359418
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,423,277 - 116,427,496 (+)NCBI
GRCm3811116,532,451 - 116,536,670 (+)NCBI
Sequence:
RefSeq Acc Id: NM_025367   ⟹   NP_079643
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,423,277 - 116,427,496 (+)NCBI
GRCm3811116,532,451 - 116,536,670 (+)NCBI
MGSCv3711116,393,225 - 116,397,989 (+)RGD
Celera11128,300,450 - 128,305,214 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532669   ⟹   XP_006532732
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,422,809 - 116,427,502 (+)NCBI
GRCm3811116,531,983 - 116,536,675 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532672   ⟹   XP_006532735
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,421,662 - 116,427,502 (+)NCBI
GRCm3811116,530,836 - 116,536,675 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314398   ⟹   XP_017169887
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911116,422,933 - 116,427,502 (+)NCBI
GRCm3811116,532,107 - 116,536,675 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001165943 (Get FASTA)   NCBI Sequence Viewer  
  NP_001165944 (Get FASTA)   NCBI Sequence Viewer  
  NP_001165946 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359413 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359414 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359415 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359416 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359417 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359418 (Get FASTA)   NCBI Sequence Viewer  
  NP_079643 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532732 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532735 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169887 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC61697 (Get FASTA)   NCBI Sequence Viewer  
  AAC61698 (Get FASTA)   NCBI Sequence Viewer  
  AAL07499 (Get FASTA)   NCBI Sequence Viewer  
  BAE22918 (Get FASTA)   NCBI Sequence Viewer  
  BAE33198 (Get FASTA)   NCBI Sequence Viewer  
  BAE36079 (Get FASTA)   NCBI Sequence Viewer  
  EDL34581 (Get FASTA)   NCBI Sequence Viewer  
  EDL34582 (Get FASTA)   NCBI Sequence Viewer  
  EDL34583 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000064743.4
  ENSMUSP00000067865
  ENSMUSP00000067865.7
  ENSMUSP00000097775
  ENSMUSP00000097775.4
  ENSMUSP00000101994
  ENSMUSP00000101994.2
  ENSMUSP00000101995
  ENSMUSP00000101995.3
  ENSMUSP00000101996
  ENSMUSP00000101996.3
  ENSMUSP00000114622.2
  ENSMUSP00000114819.2
  ENSMUSP00000116055.2
  ENSMUSP00000121064.2
  ENSMUSP00000121219.2
  ENSMUSP00000131010.2
GenBank Protein Q8CI15 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_079643   ⟸   NM_025367
- Peptide Label: isoform 2
- UniProtKB: Q3U2E3 (UniProtKB/Swiss-Prot),   O88886 (UniProtKB/Swiss-Prot),   Q91ZN3 (UniProtKB/Swiss-Prot),   Q8CI15 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001165946   ⟸   NM_001172475
- Peptide Label: isoform 3
- UniProtKB: Q8CI15 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001165943   ⟸   NM_001172472
- Peptide Label: isoform 2
- UniProtKB: Q3U2E3 (UniProtKB/Swiss-Prot),   O88886 (UniProtKB/Swiss-Prot),   Q91ZN3 (UniProtKB/Swiss-Prot),   Q8CI15 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001165944   ⟸   NM_001172473
- Peptide Label: isoform 2
- UniProtKB: Q3U2E3 (UniProtKB/Swiss-Prot),   O88886 (UniProtKB/Swiss-Prot),   Q91ZN3 (UniProtKB/Swiss-Prot),   Q8CI15 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532735   ⟸   XM_006532672
- Peptide Label: isoform X3
- UniProtKB: Q8CI15 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532732   ⟸   XM_006532669
- Peptide Label: isoform X2
- UniProtKB: O88885 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169887   ⟸   XM_017314398
- Peptide Label: isoform X1
- UniProtKB: O88885 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001359414   ⟸   NM_001372485
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001359413   ⟸   NM_001372484
- Peptide Label: isoform 2
- UniProtKB: Q8CI15 (UniProtKB/Swiss-Prot),   Q3U2E3 (UniProtKB/Swiss-Prot),   O88886 (UniProtKB/Swiss-Prot),   Q91ZN3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001359415   ⟸   NM_001372486
- Peptide Label: isoform 2
- UniProtKB: Q8CI15 (UniProtKB/Swiss-Prot),   Q3U2E3 (UniProtKB/Swiss-Prot),   O88886 (UniProtKB/Swiss-Prot),   Q91ZN3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001359416   ⟸   NM_001372487
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001359417   ⟸   NM_001372488
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001359418   ⟸   NM_001372489
- Peptide Label: isoform 3
RefSeq Acc Id: ENSMUSP00000116055   ⟸   ENSMUST00000124682
RefSeq Acc Id: ENSMUSP00000121064   ⟸   ENSMUST00000138840
RefSeq Acc Id: ENSMUSP00000114622   ⟸   ENSMUST00000145737
RefSeq Acc Id: ENSMUSP00000101994   ⟸   ENSMUST00000106386
RefSeq Acc Id: ENSMUSP00000101996   ⟸   ENSMUST00000106388
RefSeq Acc Id: ENSMUSP00000101995   ⟸   ENSMUST00000106387
RefSeq Acc Id: ENSMUSP00000121219   ⟸   ENSMUST00000154034
RefSeq Acc Id: ENSMUSP00000097775   ⟸   ENSMUST00000100201
RefSeq Acc Id: ENSMUSP00000064743   ⟸   ENSMUST00000063396
RefSeq Acc Id: ENSMUSP00000067865   ⟸   ENSMUST00000063446
RefSeq Acc Id: ENSMUSP00000114819   ⟸   ENSMUST00000155102
RefSeq Acc Id: ENSMUSP00000131010   ⟸   ENSMUST00000141798
Protein Domains
DAGKc

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CI15-F1-model_v2 AlphaFold Q8CI15 1-382 view protein structure

Promoters
RGD ID:6822203
Promoter ID:MM_KWN:10661
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000063396,   ENSMUST00000100200,   ENSMUST00000106387,   NM_001172472,   NM_001172473,   NM_001172475,   NM_011451,   OTTMUST00000008631,   OTTMUST00000008636,   OTTMUST00000008637,   OTTMUST00000008638,   OTTMUST00000008639,   OTTMUST00000008640,   OTTMUST00000008641,   OTTMUST00000008642
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611116,394,446 - 116,395,927 (+)MPROMDB
RGD ID:8677458
Promoter ID:EPDNEW_M16760
Type:initiation region
Name:Sphk1_3
Description:Mus musculus sphingosine kinase 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16761  EPDNEW_M16762  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811116,531,892 - 116,531,952EPDNEW
RGD ID:8677460
Promoter ID:EPDNEW_M16761
Type:multiple initiation site
Name:Sphk1_1
Description:Mus musculus sphingosine kinase 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16760  EPDNEW_M16762  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811116,532,455 - 116,532,515EPDNEW
RGD ID:8677462
Promoter ID:EPDNEW_M16762
Type:initiation region
Name:Sphk1_2
Description:Mus musculus sphingosine kinase 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16760  EPDNEW_M16761  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811116,533,265 - 116,533,325EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1316649 AgrOrtholog
Ensembl Genes ENSMUSG00000061878 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000063396.10 UniProtKB/Swiss-Prot
  ENSMUST00000063446 ENTREZGENE
  ENSMUST00000063446.13 UniProtKB/Swiss-Prot
  ENSMUST00000100201 ENTREZGENE
  ENSMUST00000100201.10 UniProtKB/Swiss-Prot
  ENSMUST00000106386 ENTREZGENE
  ENSMUST00000106386.8 UniProtKB/Swiss-Prot
  ENSMUST00000106387 ENTREZGENE
  ENSMUST00000106387.9 UniProtKB/Swiss-Prot
  ENSMUST00000106388 ENTREZGENE
  ENSMUST00000106388.9 UniProtKB/Swiss-Prot
  ENSMUST00000124682.8 UniProtKB/TrEMBL
  ENSMUST00000138840.8 UniProtKB/TrEMBL
  ENSMUST00000141798.4 UniProtKB/Swiss-Prot
  ENSMUST00000145737.8 UniProtKB/TrEMBL
  ENSMUST00000154034.8 UniProtKB/TrEMBL
  ENSMUST00000155102.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ATP-NAD_kinase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Diacylglycerol_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD/diacylglycerol_kinase_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20698 UniProtKB/Swiss-Prot
MGD MGI:1316649 ENTREZGENE
NCBI Gene 20698 ENTREZGENE
PANTHER SPHINGOSINE KINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPHINGOSINE KINASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DAGK_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sphk1 PhenoGen
PROSITE DAGK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DAGKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF111331 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1AT85_MOUSE UniProtKB/TrEMBL
  B1AT86_MOUSE UniProtKB/TrEMBL
  B1AT87_MOUSE UniProtKB/TrEMBL
  B1AT88_MOUSE UniProtKB/TrEMBL
  B1AT89_MOUSE UniProtKB/TrEMBL
  O88885 ENTREZGENE, UniProtKB/TrEMBL
  O88886 ENTREZGENE
  Q3U2E3 ENTREZGENE
  Q3UWJ7_MOUSE UniProtKB/TrEMBL
  Q8CI15 ENTREZGENE
  Q91ZN3 ENTREZGENE
  SPHK1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary O88886 UniProtKB/Swiss-Prot
  Q3U2E3 UniProtKB/Swiss-Prot
  Q91ZN3 UniProtKB/Swiss-Prot