Ssb (small RNA binding exonuclease protection factor La) - Rat Genome Database

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Gene: Ssb (small RNA binding exonuclease protection factor La) Mus musculus
Analyze
Symbol: Ssb
Name: small RNA binding exonuclease protection factor La
RGD ID: 733285
MGI Page MGI
Description: Enables RNA binding activity. Predicted to be involved in several processes, including IRES-dependent viral translational initiation; RNA metabolic process; and protein localization to cytoplasmic stress granule. Located in nucleus. Is expressed in several structures, including central nervous system; early conceptus; gonad; sensory organ; and spleen. Orthologous to human SSB (small RNA binding exonuclease protection factor La).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: autoantigen La; la autoantigen homolog; La protein; la ribonucleoprotein; lupus La protein homolog; Lupus LA protein homolog (LA ribonucleoprotein) (LA autoantigen homolog); MGC118101; Sjogren syndrome antigen B; SS; SS-B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18387  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39269,691,963 - 69,702,185 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl269,691,906 - 69,702,190 (+)EnsemblGRCm39 Ensembl
GRCm38269,861,562 - 69,871,846 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl269,861,562 - 69,871,846 (+)EnsemblGRCm38mm10GRCm38
MGSCv37269,699,619 - 69,709,903 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36269,662,467 - 69,672,643 (+)NCBIMGSCv36mm8
Celera271,531,605 - 71,541,890 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map240.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
17alpha-ethynylestradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,6-dinitrotoluene  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (EXP)
aminoglutethimide  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP)
benzo[b]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
chloroquine  (ISO)
chlorpyrifos  (EXP)
chrysene  (EXP)
clofibric acid  (ISO)
cocaine  (ISO)
coumarin  (ISO)
cyclosporin A  (EXP)
DDE  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethyl methanesulfonate  (ISO)
flutamide  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
hypochlorous acid  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
methyl methanesulfonate  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenobarbital  (EXP)
potassium dichromate  (EXP)
resveratrol  (ISO)
SB 203580  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
succimer  (EXP)
tamoxifen  (EXP)
tebufenpyrad  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
tetraphene  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. 3' processing of eukaryotic precursor tRNAs. Maraia RJ and Lamichhane TN, Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):362-75. doi: 10.1002/wrna.64.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8454877   PMID:10051620   PMID:10349636   PMID:10564276   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11134326   PMID:11817591   PMID:12121436   PMID:12477932   PMID:12904583  
PMID:14610273   PMID:15489334   PMID:15782199   PMID:15895466   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16449655   PMID:16512683   PMID:17875784   PMID:17907193   PMID:17971306  
PMID:18799693   PMID:18836485   PMID:21267068   PMID:21343359   PMID:21873635   PMID:22794259   PMID:22904067   PMID:23665500   PMID:24190965   PMID:24457600   PMID:26336360   PMID:27746211  
PMID:28223366   PMID:28378742   PMID:30333137   PMID:30498063   PMID:31040226   PMID:32325033   PMID:32968282   PMID:34323105   PMID:34723322   PMID:37142655   PMID:37839992  


Genomics

Comparative Map Data
Ssb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39269,691,963 - 69,702,185 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl269,691,906 - 69,702,190 (+)EnsemblGRCm39 Ensembl
GRCm38269,861,562 - 69,871,846 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl269,861,562 - 69,871,846 (+)EnsemblGRCm38mm10GRCm38
MGSCv37269,699,619 - 69,709,903 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36269,662,467 - 69,672,643 (+)NCBIMGSCv36mm8
Celera271,531,605 - 71,541,890 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map240.95NCBI
SSB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382169,798,871 - 169,812,064 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2169,791,933 - 169,812,064 (+)EnsemblGRCh38hg38GRCh38
GRCh372170,655,381 - 170,668,574 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362170,363,635 - 170,376,821 (+)NCBINCBI36Build 36hg18NCBI36
Build 342170,480,895 - 170,494,082NCBI
Celera2164,271,755 - 164,284,947 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2162,543,375 - 162,556,636 (+)NCBIHuRef
CHM1_12170,659,176 - 170,674,430 (+)NCBICHM1_1
T2T-CHM13v2.02170,276,405 - 170,289,608 (+)NCBIT2T-CHM13v2.0
Ssb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8375,024,385 - 75,034,016 (+)NCBIGRCr8
mRatBN7.2354,616,616 - 54,626,203 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl354,616,619 - 54,626,203 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx358,018,226 - 58,027,720 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0366,601,821 - 66,611,315 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0364,364,199 - 64,373,694 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0356,092,425 - 56,102,008 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl356,092,501 - 56,102,001 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0362,727,433 - 62,737,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4352,001,106 - 52,010,611 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1351,897,477 - 51,906,978 (+)NCBI
Celera354,176,184 - 54,185,689 (+)NCBICelera
Cytogenetic Map3q21NCBI
Ssb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554494,806,468 - 4,815,175 (-)NCBIChiLan1.0ChiLan1.0
SSB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21372,459,193 - 72,472,464 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B72,474,165 - 72,487,436 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B57,071,158 - 57,084,428 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B174,536,382 - 174,549,609 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B174,536,382 - 174,549,604 (+)Ensemblpanpan1.1panPan2
SSB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13614,465,088 - 14,476,786 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3614,465,129 - 14,476,609 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3614,477,215 - 14,488,515 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03614,584,035 - 14,595,782 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3614,584,083 - 14,597,032 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13614,667,144 - 14,678,600 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03614,659,402 - 14,670,867 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03614,770,849 - 14,782,579 (+)NCBIUU_Cfam_GSD_1.0
Ssb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303131,732,490 - 131,741,876 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936509286,398 - 298,147 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936509286,397 - 295,779 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1576,088,641 - 76,100,785 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11576,088,587 - 76,099,517 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21585,205,395 - 85,216,312 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SSB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11055,325,975 - 55,339,317 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1055,262,897 - 55,339,008 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040144,196,826 - 144,210,322 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ssb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247877,292,549 - 7,301,190 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:922
Count of miRNA genes:347
Interacting mature miRNAs:407
Transcripts:ENSMUST00000090852, ENSMUST00000112260, ENSMUST00000132186, ENSMUST00000132603, ENSMUST00000156057, ENSMUST00000166411
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
13432174Actres5_mactivity response to ethanol/saline 5 (mouse)25989228769792287Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
13432178Actres2_mactivity response to ethanol/saline 2 (mouse)26069228774092287Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
1301059Hrtfm1_mheart failure modifier 1 (mouse)Not determined26759194074964933Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse

Markers in Region
Ssb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381133,172,961 - 33,173,167UniSTSGRCm38
MGSCv371133,072,961 - 33,073,167UniSTSGRCm37
Celera1135,585,230 - 35,585,436UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map6B2UniSTS
Cytogenetic Map2C2UniSTS
cM Map241.0UniSTS
cM Map241.0UniSTS
Ssb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C2UniSTS
cM Map241.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_149321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK017822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC106150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX322634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L00993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y07951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000090852   ⟹   ENSMUSP00000088365
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl269,691,906 - 69,702,130 (+)Ensembl
GRCm38.p6 Ensembl269,861,562 - 69,871,786 (+)Ensembl
Ensembl Acc Id: ENSMUST00000112260   ⟹   ENSMUSP00000107879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl269,692,030 - 69,697,896 (+)Ensembl
GRCm38.p6 Ensembl269,861,686 - 69,867,552 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132186   ⟹   ENSMUSP00000119773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl269,691,967 - 69,701,854 (+)Ensembl
GRCm38.p6 Ensembl269,861,623 - 69,871,510 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132603   ⟹   ENSMUSP00000115666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl269,699,123 - 69,701,854 (+)Ensembl
GRCm38.p6 Ensembl269,868,779 - 69,871,510 (+)Ensembl
Ensembl Acc Id: ENSMUST00000156057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl269,693,635 - 69,699,494 (+)Ensembl
GRCm38.p6 Ensembl269,863,291 - 69,869,150 (+)Ensembl
Ensembl Acc Id: ENSMUST00000166411   ⟹   ENSMUSP00000130313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl269,691,906 - 69,702,190 (+)Ensembl
GRCm38.p6 Ensembl269,861,562 - 69,871,846 (+)Ensembl
RefSeq Acc Id: NM_001110145   ⟹   NP_001103615
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,691,963 - 69,702,185 (+)NCBI
GRCm38269,861,562 - 69,871,846 (+)ENTREZGENE
MGSCv37269,699,619 - 69,709,903 (+)RGD
Celera271,531,605 - 71,541,890 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001355265   ⟹   NP_001342194
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,691,963 - 69,702,185 (+)NCBI
GRCm38269,861,562 - 69,871,846 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001421043   ⟹   NP_001407972
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,691,963 - 69,702,185 (+)NCBI
RefSeq Acc Id: NM_001421044   ⟹   NP_001407973
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,692,115 - 69,702,185 (+)NCBI
RefSeq Acc Id: NM_001421045   ⟹   NP_001407974
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,692,521 - 69,702,185 (+)NCBI
RefSeq Acc Id: NM_001421046   ⟹   NP_001407975
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,691,963 - 69,702,185 (+)NCBI
RefSeq Acc Id: NM_001421049   ⟹   NP_001407978
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,692,521 - 69,702,185 (+)NCBI
RefSeq Acc Id: NM_001421050   ⟹   NP_001407979
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,691,963 - 69,702,185 (+)NCBI
RefSeq Acc Id: NM_001421052   ⟹   NP_001407981
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,691,963 - 69,702,185 (+)NCBI
RefSeq Acc Id: NM_001421053   ⟹   NP_001407982
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,691,963 - 69,702,185 (+)NCBI
RefSeq Acc Id: NM_001421054   ⟹   NP_001407983
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,691,963 - 69,702,185 (+)NCBI
RefSeq Acc Id: NM_009278   ⟹   NP_033304
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,691,963 - 69,702,185 (+)NCBI
GRCm38269,861,562 - 69,871,846 (+)ENTREZGENE
MGSCv37269,699,619 - 69,709,903 (+)RGD
Celera271,531,605 - 71,541,890 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_149321
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,691,963 - 69,702,185 (+)NCBI
GRCm38269,861,562 - 69,871,846 (+)NCBI
Sequence:
RefSeq Acc Id: NR_185233
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,691,963 - 69,702,185 (+)NCBI
RefSeq Acc Id: NR_185234
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39269,692,521 - 69,702,185 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001103615 (Get FASTA)   NCBI Sequence Viewer  
  NP_001342194 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407972 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407973 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407974 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407975 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407978 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407979 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407981 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407982 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407983 (Get FASTA)   NCBI Sequence Viewer  
  NP_033304 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA39415 (Get FASTA)   NCBI Sequence Viewer  
  AAH03820 (Get FASTA)   NCBI Sequence Viewer  
  AAI06151 (Get FASTA)   NCBI Sequence Viewer  
  BAB30957 (Get FASTA)   NCBI Sequence Viewer  
  BAC28092 (Get FASTA)   NCBI Sequence Viewer  
  BAC40309 (Get FASTA)   NCBI Sequence Viewer  
  BAC40478 (Get FASTA)   NCBI Sequence Viewer  
  BAC40498 (Get FASTA)   NCBI Sequence Viewer  
  BAE24699 (Get FASTA)   NCBI Sequence Viewer  
  BAE40655 (Get FASTA)   NCBI Sequence Viewer  
  CAA69249 (Get FASTA)   NCBI Sequence Viewer  
  EDL27049 (Get FASTA)   NCBI Sequence Viewer  
  EDL27050 (Get FASTA)   NCBI Sequence Viewer  
  EDL27051 (Get FASTA)   NCBI Sequence Viewer  
  EDL27052 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000088365
  ENSMUSP00000088365.5
  ENSMUSP00000107879.2
  ENSMUSP00000115666.2
  ENSMUSP00000119773.2
  ENSMUSP00000130313
  ENSMUSP00000130313.2
GenBank Protein P32067 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_033304   ⟸   NM_009278
- Peptide Label: isoform a
- UniProtKB: P32067 (UniProtKB/Swiss-Prot),   Q564E6 (UniProtKB/TrEMBL),   Q3TG93 (UniProtKB/TrEMBL),   Q8BTU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103615   ⟸   NM_001110145
- Peptide Label: isoform a
- UniProtKB: P32067 (UniProtKB/Swiss-Prot),   Q564E6 (UniProtKB/TrEMBL),   Q3TG93 (UniProtKB/TrEMBL),   Q8BTU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342194   ⟸   NM_001355265
- Peptide Label: isoform b
- UniProtKB: Q3TG93 (UniProtKB/TrEMBL),   Q8BTU4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000088365   ⟸   ENSMUST00000090852
Ensembl Acc Id: ENSMUSP00000130313   ⟸   ENSMUST00000166411
Ensembl Acc Id: ENSMUSP00000115666   ⟸   ENSMUST00000132603
Ensembl Acc Id: ENSMUSP00000107879   ⟸   ENSMUST00000112260
Ensembl Acc Id: ENSMUSP00000119773   ⟸   ENSMUST00000132186
RefSeq Acc Id: NP_001407982   ⟸   NM_001421053
- Peptide Label: isoform c
RefSeq Acc Id: NP_001407979   ⟸   NM_001421050
- Peptide Label: isoform c
RefSeq Acc Id: NP_001407975   ⟸   NM_001421046
- Peptide Label: isoform b
RefSeq Acc Id: NP_001407983   ⟸   NM_001421054
- Peptide Label: isoform d
RefSeq Acc Id: NP_001407972   ⟸   NM_001421043
- Peptide Label: isoform a
- UniProtKB: P32067 (UniProtKB/Swiss-Prot),   Q564E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407981   ⟸   NM_001421052
- Peptide Label: isoform c
RefSeq Acc Id: NP_001407973   ⟸   NM_001421044
- Peptide Label: isoform a
- UniProtKB: P32067 (UniProtKB/Swiss-Prot),   Q564E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407974   ⟸   NM_001421045
- Peptide Label: isoform a
- UniProtKB: P32067 (UniProtKB/Swiss-Prot),   Q564E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407978   ⟸   NM_001421049
- Peptide Label: isoform b
Protein Domains
HTH La-type RNA-binding   RRM   XRRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P32067-F1-model_v2 AlphaFold P32067 1-415 view protein structure

Promoters
RGD ID:6832839
Promoter ID:MM_KWN:29560
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000090851,   ENSMUST00000112260,   NM_001110145,   NM_009278,   OTTMUST00000031437,   UC008JYU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36269,698,946 - 69,699,762 (+)MPROMDB
RGD ID:6832841
Promoter ID:MM_KWN:29562
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000031440
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36269,706,996 - 69,707,496 (+)MPROMDB
RGD ID:6877520
Promoter ID:EPDNEW_M2210
Type:initiation region
Name:Ssb_1
Description:Mus musculus Sjogren syndrome antigen B , transcript variant4, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2211  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38269,861,619 - 69,861,679EPDNEW
RGD ID:6877522
Promoter ID:EPDNEW_M2211
Type:single initiation site
Name:Ssb_2
Description:Mus musculus Sjogren syndrome antigen B , transcript variant4, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2210  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38269,862,178 - 69,862,238EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98423 AgrOrtholog
Ensembl Genes ENSMUSG00000068882 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000090852 ENTREZGENE
  ENSMUST00000090852.11 UniProtKB/Swiss-Prot
  ENSMUST00000112260.3 UniProtKB/TrEMBL
  ENSMUST00000132186 ENTREZGENE
  ENSMUST00000132186.8 UniProtKB/TrEMBL
  ENSMUST00000132603.2 UniProtKB/TrEMBL
  ENSMUST00000166411 ENTREZGENE
  ENSMUST00000166411.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro La_dom_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  La_HTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  La_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lupus_La UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20823 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98423 ENTREZGENE
NCBI Gene 20823 ENTREZGENE
PANTHER LUPUS LA PROTEIN HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22792 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF05383 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ssb PhenoGen
PRINTS LUPUSLA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HTH_LA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XRRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00715 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AR07_MOUSE UniProtKB/TrEMBL
  D6RI87_MOUSE UniProtKB/TrEMBL
  F6SXM5_MOUSE UniProtKB/TrEMBL
  LA_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TG93 ENTREZGENE, UniProtKB/TrEMBL
  Q564E6 ENTREZGENE, UniProtKB/TrEMBL
  Q8BTU4 ENTREZGENE, UniProtKB/TrEMBL
  Q8BTY4_MOUSE UniProtKB/TrEMBL
  Q9CYB9_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-21 Ssb  small RNA binding exonuclease protection factor La  Ssb  Sjogren syndrome antigen B  Symbol and/or name change 5135510 APPROVED