Dclre1c (DNA cross-link repair 1C) - Rat Genome Database

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Gene: Dclre1c (DNA cross-link repair 1C) Mus musculus
Analyze
Symbol: Dclre1c
Name: DNA cross-link repair 1C
RGD ID: 733256
MGI Page MGI
Description: Predicted to enable 5'-3' DNA exonuclease activity; damaged DNA binding activity; and single-stranded DNA endodeoxyribonuclease activity. Acts upstream of or within B cell differentiation; DNA metabolic process; and response to ionizing radiation. Predicted to be located in Golgi apparatus and nucleoplasm. Predicted to be part of nonhomologous end joining complex. Used to study severe combined immunodeficiency with sensitivity to ionizing radiation. Human ortholog(s) of this gene implicated in Omenn syndrome; common variable immunodeficiency; severe combined immunodeficiency; and severe combined immunodeficiency with sensitivity to ionizing radiation. Orthologous to human DCLRE1C (DNA cross-link repair 1C).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 9930121L06Rik; A; AI661365; Art; artemis; DNA cross-link repair 1A, PSO2 homolog; DNA cross-link repair 1C protein; DNA cross-link repair 1C, PSO2 homolog; mArt; MGC123409; SNM1-like protein; Snm1l
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,425,112 - 3,475,248 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,425,168 - 3,465,167 (+)EnsemblGRCm39 Ensembl
GRCm3823,424,061 - 3,474,211 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,424,131 - 3,464,130 (+)EnsemblGRCm38mm10GRCm38
MGSCv3723,341,403 - 3,378,385 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3623,341,422 - 3,377,160 (+)NCBIMGSCv36mm8
Celera23,375,049 - 3,412,101 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map21.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal B cell differentiation  (IAGP)
abnormal cell physiology  (IAGP)
abnormal class switch recombination  (IAGP)
abnormal immunoglobulin heavy chain V(D)J recombination  (IAGP)
abnormal leukocyte physiology  (IAGP)
abnormal lymph node morphology  (IAGP)
abnormal mononuclear cell morphology  (IAGP)
abnormal spleen B cell follicle morphology  (IAGP)
abnormal T cell receptor beta chain V(D)J recombination  (IAGP)
abnormal T cell receptor V(D)J recombination  (IAGP)
absent B cells  (IAGP)
absent CD4-positive, alpha-beta T cells  (IAGP)
absent CD8-positive, alpha-beta T cells  (IAGP)
absent immature B cells  (IAGP)
absent T cells  (IAGP)
absent thymus cortex  (IAGP)
arrested B cell differentiation  (IAGP)
arrested T cell differentiation  (IAGP)
chromosomal instability  (IAGP)
decreased B cell number  (IAGP)
decreased B cell proliferation  (IAGP)
decreased B-1 B cell number  (IEA)
decreased body size  (IEA)
decreased body weight  (IEA)
decreased CD4-positive, alpha-beta T cell number  (IAGP)
decreased CD8-positive, alpha-beta T cell number  (IAGP)
decreased CD8-positive, naive alpha-beta T cell number  (IEA)
decreased DN1 thymic pro-T cell number  (IAGP)
decreased DN4 thymocyte number  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased IgM level  (IEA)
decreased lymphocyte cell number  (IAGP)
decreased mature B cell number  (IAGP)
decreased NK T cell number  (IEA)
decreased pre-B cell number  (IAGP)
decreased response to antigen  (IEA)
decreased single-positive T cell number  (IEA)
decreased splenocyte number  (IAGP)
decreased systemic arterial systolic blood pressure  (IEA)
decreased T cell number  (IEA)
decreased T cell proliferation  (IAGP)
decreased thymocyte number  (IAGP)
decreased thymus weight  (IAGP)
impaired humoral immune response  (IEA)
increased body weight  (IEA)
increased cellular sensitivity to gamma-irradiation  (IAGP)
increased cellular sensitivity to ionizing radiation  (IAGP)
increased central memory CD4-positive, alpha-beta T cell number  (IEA)
increased central memory CD8 positive, alpha-beta T cell number  (IEA)
increased effector memory CD4-positive, alpha-beta T cell number  (IEA)
increased effector memory CD8-positive, alpha-beta T cell number  (IEA)
increased macrophage cell number  (IEA)
increased neutrophil cell number  (IEA)
increased NK cell number  (IEA)
increased pro-B cell number  (IAGP)
induced chromosome breakage  (IAGP)
small lymph nodes  (IAGP)
small spleen  (IAGP)
spleen hypoplasia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Lieber MR Annu Rev Biochem. 2010;79:181-211. doi: 10.1146/annurev.biochem.052308.093131.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Artemis, a novel DNA double-strand break repair/V(D)J recombination protein, is mutated in human severe combined immune deficiency. Moshous D, etal., Cell. 2001 Apr 20;105(2):177-86.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Defective DNA repair and increased genomic instability in Artemis-deficient murine cells. Rooney S, etal., J Exp Med 2003 Mar 3;197(5):553-65.
12. DCLRE1C (ARTEMIS) mutations causing phenotypes ranging from atypical severe combined immunodeficiency to mere antibody deficiency. Volk T, etal., Hum Mol Genet. 2015 Dec 20;24(25):7361-72. doi: 10.1093/hmg/ddv437. Epub 2015 Oct 16.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12177301   PMID:12477932   PMID:12504013   PMID:12846809   PMID:14983023   PMID:15699179   PMID:15699324   PMID:16141072  
PMID:16141073   PMID:16797606   PMID:17384673   PMID:17686847   PMID:18316419   PMID:18501428   PMID:18560421   PMID:18849970   PMID:19135937   PMID:19221393   PMID:19349461   PMID:19362533  
PMID:19435904   PMID:19450528   PMID:19692705   PMID:19779458   PMID:19887394   PMID:20528238   PMID:20947684   PMID:20979627   PMID:21147755   PMID:21160476   PMID:21267068   PMID:21596788  
PMID:21873635   PMID:22015994   PMID:22201128   PMID:22476261   PMID:23207905   PMID:23345432   PMID:23448902   PMID:23836881   PMID:23969417   PMID:24069355   PMID:24218622   PMID:24316575  
PMID:24622732   PMID:24837676   PMID:25037770   PMID:25818648   PMID:28819025   PMID:31097467   PMID:32572033  


Genomics

Comparative Map Data
Dclre1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,425,112 - 3,475,248 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,425,168 - 3,465,167 (+)EnsemblGRCm39 Ensembl
GRCm3823,424,061 - 3,474,211 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,424,131 - 3,464,130 (+)EnsemblGRCm38mm10GRCm38
MGSCv3723,341,403 - 3,378,385 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3623,341,422 - 3,377,160 (+)NCBIMGSCv36mm8
Celera23,375,049 - 3,412,101 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map21.93NCBI
DCLRE1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381014,897,359 - 14,954,432 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1014,897,359 - 14,954,432 (-)EnsemblGRCh38hg38GRCh38
GRCh371014,939,358 - 14,996,431 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361014,988,876 - 15,036,100 (-)NCBINCBI36Build 36hg18NCBI36
Build 341014,989,883 - 15,036,100NCBI
Celera1014,876,909 - 14,924,986 (-)NCBICelera
Cytogenetic Map10p13NCBI
HuRef1014,859,351 - 14,906,283 (-)NCBIHuRef
CHM1_11014,948,990 - 14,996,230 (-)NCBICHM1_1
T2T-CHM13v2.01014,911,323 - 14,968,389 (-)NCBIT2T-CHM13v2.0
Dclre1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81779,684,988 - 79,718,399 (-)NCBIGRCr8
mRatBN7.21774,775,828 - 74,810,089 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1774,776,935 - 74,809,186 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1778,230,144 - 78,276,463 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01782,078,430 - 82,110,655 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01776,113,583 - 76,159,803 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01778,782,512 - 78,812,140 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1778,783,437 - 78,812,111 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01780,427,567 - 80,455,846 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41785,896,581 - 85,928,644 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11785,907,414 - 85,939,509 (-)NCBI
Celera1774,162,589 - 74,190,482 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
Dclre1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542919,461,528 - 19,505,321 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542919,461,446 - 19,501,908 (+)NCBIChiLan1.0ChiLan1.0
DCLRE1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2827,424,395 - 27,479,455 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11027,428,821 - 27,485,110 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01014,901,335 - 14,956,947 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11015,229,515 - 15,625,331 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1015,236,558 - 15,269,043 (-)Ensemblpanpan1.1panPan2
DCLRE1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1221,688,822 - 21,725,021 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl221,688,766 - 21,724,248 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha218,802,137 - 18,838,319 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0221,990,248 - 22,026,469 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl221,990,189 - 22,056,964 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1219,190,563 - 19,227,141 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0220,025,548 - 20,061,768 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0220,652,201 - 20,688,382 (+)NCBIUU_Cfam_GSD_1.0
Dclre1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093446,920,004 - 6,950,544 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366131,470,365 - 1,501,138 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366131,467,797 - 1,501,107 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCLRE1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1046,820,053 - 46,868,028 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11046,820,016 - 46,863,848 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21051,553,277 - 51,596,761 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DCLRE1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1914,929,221 - 14,974,791 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl914,929,317 - 14,965,443 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605120,464,546 - 20,515,010 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dclre1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624805555,545 - 592,250 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624805555,444 - 593,548 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dclre1c
1451 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3675
Count of miRNA genes:859
Interacting mature miRNAs:1157
Transcripts:ENSMUST00000061852, ENSMUST00000100463, ENSMUST00000102988, ENSMUST00000115066, ENSMUST00000129657, ENSMUST00000131433, ENSMUST00000132565, ENSMUST00000146027, ENSMUST00000152468
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121989642Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse

Markers in Region
AU022550  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,455,962 - 3,456,059UniSTSGRCm38
MGSCv3723,373,234 - 3,373,331UniSTSGRCm37
Celera23,406,950 - 3,407,047UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map2AUniSTS
cM Map21.0UniSTS
cM Map22.5UniSTS
Whitehead/MRC_RH248.58UniSTS
UniSTS:490500  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,431,865 - 3,432,146UniSTSGRCm38
MGSCv3723,349,137 - 3,349,418UniSTSGRCm37
Cytogenetic Map2A1UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
AA536750  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,457,627 - 3,457,752UniSTSGRCm38
MGSCv3723,374,899 - 3,375,024UniSTSGRCm37
Celera23,408,615 - 3,408,740UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map2AUniSTS
cM Map22.5UniSTS
Whitehead/MRC_RH248.56UniSTS
RH124451  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,457,790 - 3,457,876UniSTSGRCm38
MGSCv3723,375,062 - 3,375,148UniSTSGRCm37
Celera23,408,778 - 3,408,864UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map2AUniSTS
cM Map22.5UniSTS
UniSTS:234318  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,455,869 - 3,456,068UniSTSGRCm38
MGSCv3723,373,141 - 3,373,340UniSTSGRCm37
Celera23,406,857 - 3,407,056UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map2AUniSTS
cM Map22.5UniSTS
AI661365  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,455,022 - 3,455,138UniSTSGRCm38
MGSCv3723,372,294 - 3,372,410UniSTSGRCm37
Celera23,406,010 - 3,406,126UniSTS
Cytogenetic Map2AUniSTS
Cytogenetic Map2A1UniSTS
cM Map22.5UniSTS
Whitehead/MRC_RH264.31UniSTS
AA930238  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,451,915 - 3,452,030UniSTSGRCm38
MGSCv3723,369,187 - 3,369,302UniSTSGRCm37
Celera23,402,903 - 3,403,018UniSTS
Cytogenetic Map2A1UniSTS
Whitehead/MRC_RH248.58UniSTS
AU022550  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,455,863 - 3,456,104UniSTSGRCm38
MGSCv3723,373,135 - 3,373,376UniSTSGRCm37
Celera23,406,851 - 3,407,092UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map2AUniSTS
cM Map21.0UniSTS
Whitehead/MRC_RH247.57UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA254140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA940383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF387731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE850534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX516565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY010590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY729142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000061852   ⟹   ENSMUSP00000054300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,425,168 - 3,465,167 (+)Ensembl
GRCm38.p6 Ensembl23,424,131 - 3,464,130 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100463   ⟹   ENSMUSP00000098031
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,425,168 - 3,462,148 (+)Ensembl
GRCm38.p6 Ensembl23,424,131 - 3,461,111 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102988   ⟹   ENSMUSP00000100053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,425,187 - 3,455,129 (+)Ensembl
GRCm38.p6 Ensembl23,424,150 - 3,454,092 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115066   ⟹   ENSMUSP00000110718
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,425,202 - 3,462,140 (+)Ensembl
GRCm38.p6 Ensembl23,424,165 - 3,461,103 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129657   ⟹   ENSMUSP00000116883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,441,866 - 3,459,958 (+)Ensembl
GRCm38.p6 Ensembl23,440,829 - 3,458,921 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,425,239 - 3,443,243 (+)Ensembl
GRCm38.p6 Ensembl23,424,202 - 3,442,206 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132565
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,425,187 - 3,439,051 (+)Ensembl
GRCm38.p6 Ensembl23,424,150 - 3,438,014 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146027
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,425,202 - 3,439,089 (+)Ensembl
GRCm38.p6 Ensembl23,424,165 - 3,438,052 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,453,986 - 3,454,904 (+)Ensembl
GRCm38.p6 Ensembl23,452,949 - 3,453,867 (+)Ensembl
RefSeq Acc Id: NM_001110214   ⟹   NP_001103684
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,168 - 3,462,150 (+)NCBI
GRCm3823,424,131 - 3,461,113 (+)NCBI
MGSCv3723,341,403 - 3,378,385 (+)RGD
Celera23,375,049 - 3,412,101 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001302674   ⟹   NP_001289603
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,168 - 3,462,150 (+)NCBI
GRCm3823,424,131 - 3,461,113 (+)NCBI
Celera23,375,049 - 3,412,101 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001302684   ⟹   NP_001289613
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,168 - 3,456,391 (+)NCBI
GRCm3823,424,131 - 3,455,354 (+)NCBI
Celera23,375,049 - 3,412,101 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362903   ⟹   NP_001349832
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,168 - 3,467,484 (+)NCBI
GRCm3823,424,131 - 3,466,447 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362904   ⟹   NP_001349833
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,168 - 3,443,243 (+)NCBI
GRCm3823,424,131 - 3,442,206 (+)NCBI
Sequence:
RefSeq Acc Id: NM_146114   ⟹   NP_666226
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,168 - 3,456,391 (+)NCBI
GRCm3823,424,131 - 3,455,354 (+)NCBI
MGSCv3723,341,403 - 3,378,385 (+)RGD
Celera23,375,049 - 3,412,101 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_175683   ⟹   NP_783614
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,168 - 3,462,150 (+)NCBI
GRCm3823,424,131 - 3,461,113 (+)NCBI
MGSCv3723,341,403 - 3,378,385 (+)RGD
Celera23,375,049 - 3,412,101 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497452   ⟹   XP_006497515
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,146 - 3,456,394 (+)NCBI
GRCm3823,424,100 - 3,455,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497453   ⟹   XP_006497516
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,143 - 3,475,248 (+)NCBI
GRCm3823,424,088 - 3,474,211 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497454   ⟹   XP_006497517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,144 - 3,465,167 (+)NCBI
GRCm3823,424,090 - 3,464,130 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497455   ⟹   XP_006497518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,202 - 3,456,394 (+)NCBI
GRCm3823,424,165 - 3,455,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497456   ⟹   XP_006497519
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,196 - 3,456,394 (+)NCBI
GRCm3823,424,168 - 3,455,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497458   ⟹   XP_006497521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,221 - 3,456,394 (+)NCBI
GRCm3823,424,184 - 3,455,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497459   ⟹   XP_006497522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,202 - 3,456,394 (+)NCBI
GRCm3823,424,165 - 3,455,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497460   ⟹   XP_006497523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,202 - 3,456,394 (+)NCBI
GRCm3823,424,165 - 3,455,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497462   ⟹   XP_006497525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,112 - 3,451,309 (+)NCBI
GRCm3823,424,061 - 3,450,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011238971   ⟹   XP_011237273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,137 - 3,453,978 (+)NCBI
GRCm3823,424,074 - 3,455,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011238972   ⟹   XP_011237274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,221 - 3,465,076 (+)NCBI
GRCm3823,424,184 - 3,464,039 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249529   ⟹   XP_030105389
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,221 - 3,465,076 (+)NCBI
GRCm3823,424,168 - 3,464,039 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249547   ⟹   XP_030105407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,226 - 3,456,394 (+)NCBI
GRCm3823,424,189 - 3,455,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249550   ⟹   XP_030105410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,215 - 3,465,076 (+)NCBI
GRCm3823,424,178 - 3,464,039 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160614   ⟹   XP_036016507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,148 - 3,456,394 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160623   ⟹   XP_036016516
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,226 - 3,456,394 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160629   ⟹   XP_036016522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,226 - 3,456,394 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160633   ⟹   XP_036016526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,221 - 3,465,076 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004939536
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,425,112 - 3,456,394 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001103684 (Get FASTA)   NCBI Sequence Viewer  
  NP_001289603 (Get FASTA)   NCBI Sequence Viewer  
  NP_001289613 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349832 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349833 (Get FASTA)   NCBI Sequence Viewer  
  NP_666226 (Get FASTA)   NCBI Sequence Viewer  
  NP_783614 (Get FASTA)   NCBI Sequence Viewer  
  XP_006497515 (Get FASTA)   NCBI Sequence Viewer  
  XP_006497516 (Get FASTA)   NCBI Sequence Viewer  
  XP_006497517 (Get FASTA)   NCBI Sequence Viewer  
  XP_006497518 (Get FASTA)   NCBI Sequence Viewer  
  XP_006497519 (Get FASTA)   NCBI Sequence Viewer  
  XP_006497521 (Get FASTA)   NCBI Sequence Viewer  
  XP_006497522 (Get FASTA)   NCBI Sequence Viewer  
  XP_006497523 (Get FASTA)   NCBI Sequence Viewer  
  XP_006497525 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237273 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237274 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105389 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105407 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105410 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016507 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016516 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016522 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016526 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI08936 (Get FASTA)   NCBI Sequence Viewer  
  AAM89119 (Get FASTA)   NCBI Sequence Viewer  
  BAC29713 (Get FASTA)   NCBI Sequence Viewer  
  BAC34960 (Get FASTA)   NCBI Sequence Viewer  
  BAC40586 (Get FASTA)   NCBI Sequence Viewer  
  BAE38706 (Get FASTA)   NCBI Sequence Viewer  
  EDL07928 (Get FASTA)   NCBI Sequence Viewer  
  EDL07929 (Get FASTA)   NCBI Sequence Viewer  
  EDL07930 (Get FASTA)   NCBI Sequence Viewer  
  EDL07931 (Get FASTA)   NCBI Sequence Viewer  
  EDL07932 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000054300
  ENSMUSP00000054300.6
  ENSMUSP00000098031
  ENSMUSP00000098031.4
  ENSMUSP00000100053
  ENSMUSP00000100053.4
  ENSMUSP00000110718
  ENSMUSP00000110718.2
  ENSMUSP00000116883.2
GenBank Protein Q8K4J0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_666226   ⟸   NM_146114
- Peptide Label: isoform 1
- UniProtKB: Q8BG72 (UniProtKB/Swiss-Prot),   A2AJG8 (UniProtKB/Swiss-Prot),   A2AJG7 (UniProtKB/Swiss-Prot),   A2AJG6 (UniProtKB/Swiss-Prot),   Q8BTT1 (UniProtKB/Swiss-Prot),   Q8K4J0 (UniProtKB/Swiss-Prot),   Q3TLT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_783614   ⟸   NM_175683
- Peptide Label: isoform 2
- UniProtKB: Q3TLT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103684   ⟸   NM_001110214
- Peptide Label: isoform 3
- UniProtKB: Q32MX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497516   ⟸   XM_006497453
- Peptide Label: isoform X3
- UniProtKB: Q3TLT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497517   ⟸   XM_006497454
- Peptide Label: isoform X4
- UniProtKB: Q3TLT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497515   ⟸   XM_006497452
- Peptide Label: isoform X1
- UniProtKB: Q3TLT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497525   ⟸   XM_006497462
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006497523   ⟸   XM_006497460
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006497518   ⟸   XM_006497455
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006497522   ⟸   XM_006497459
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006497519   ⟸   XM_006497456
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006497521   ⟸   XM_006497458
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: NP_001289603   ⟸   NM_001302674
- Peptide Label: isoform 4
- UniProtKB: Q8K4J0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289613   ⟸   NM_001302684
- Peptide Label: isoform 5
- UniProtKB: Q3TLT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237273   ⟸   XM_011238971
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_011237274   ⟸   XM_011238972
- Peptide Label: isoform X12
- UniProtKB: Q8K4J0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001349832   ⟸   NM_001362903
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001349833   ⟸   NM_001362904
- Peptide Label: isoform 7
RefSeq Acc Id: XP_030105389   ⟸   XM_030249529
- Peptide Label: isoform X11
RefSeq Acc Id: XP_030105410   ⟸   XM_030249550
- Peptide Label: isoform X14
RefSeq Acc Id: XP_030105407   ⟸   XM_030249547
- Peptide Label: isoform X13
RefSeq Acc Id: ENSMUSP00000054300   ⟸   ENSMUST00000061852
RefSeq Acc Id: ENSMUSP00000110718   ⟸   ENSMUST00000115066
RefSeq Acc Id: ENSMUSP00000116883   ⟸   ENSMUST00000129657
RefSeq Acc Id: ENSMUSP00000098031   ⟸   ENSMUST00000100463
RefSeq Acc Id: ENSMUSP00000100053   ⟸   ENSMUST00000102988
RefSeq Acc Id: XP_036016507   ⟸   XM_036160614
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036016526   ⟸   XM_036160633
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036016522   ⟸   XM_036160629
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036016516   ⟸   XM_036160623
- Peptide Label: isoform X6
Protein Domains
DNA repair metallo-beta-lactamase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K4J0-F1-model_v2 AlphaFold Q8K4J0 1-705 view protein structure

Promoters
RGD ID:6831141
Promoter ID:MM_KWN:27511
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000100462,   ENSMUST00000115067,   NM_001110214,   NM_146114,   NM_175683,   OTTMUST00000025193,   OTTMUST00000025194,   UC008IDY.1,   UC008IEB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3623,341,174 - 3,341,674 (+)MPROMDB
RGD ID:6876220
Promoter ID:EPDNEW_M1561
Type:initiation region
Name:Dclre1c_1
Description:Mus musculus DNA cross-link repair 1C , transcript variant 4,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3823,424,165 - 3,424,225EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2441769 AgrOrtholog
Ensembl Genes ENSMUSG00000026648 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000061852 ENTREZGENE
  ENSMUST00000061852.12 UniProtKB/Swiss-Prot
  ENSMUST00000100463 ENTREZGENE
  ENSMUST00000100463.10 UniProtKB/TrEMBL
  ENSMUST00000102988 ENTREZGENE
  ENSMUST00000102988.10 UniProtKB/Swiss-Prot
  ENSMUST00000115066 ENTREZGENE
  ENSMUST00000115066.8 UniProtKB/Swiss-Prot
  ENSMUST00000129657.2 UniProtKB/TrEMBL
  ENSMUST00000131433 ENTREZGENE
Gene3D-CATH 3.40.50.12650 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.60.15.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DRMBL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RibonucZ/Hydroxyglut_hydro UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:227525 UniProtKB/Swiss-Prot
MGD MGI:2441769 ENTREZGENE
NCBI Gene 227525 ENTREZGENE
PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN ARTEMIS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DRMBL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dclre1c PhenoGen
Superfamily-SCOP SSF56281 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AJG6 ENTREZGENE
  A2AJG7 ENTREZGENE
  A2AJG8 ENTREZGENE
  DCR1C_MOUSE UniProtKB/Swiss-Prot
  F7BA65_MOUSE UniProtKB/TrEMBL
  Q32MX8 ENTREZGENE, UniProtKB/TrEMBL
  Q3TLT6 ENTREZGENE, UniProtKB/TrEMBL
  Q8BG72 ENTREZGENE
  Q8BTT1 ENTREZGENE
  Q8K4J0 ENTREZGENE
UniProt Secondary A2AJG6 UniProtKB/Swiss-Prot
  A2AJG7 UniProtKB/Swiss-Prot
  A2AJG8 UniProtKB/Swiss-Prot
  Q8BG72 UniProtKB/Swiss-Prot
  Q8BTT1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 Dclre1c  DNA cross-link repair 1C    DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED