Bbox1 (gamma-butyrobetaine hydroxylase 1) - Rat Genome Database

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Gene: Bbox1 (gamma-butyrobetaine hydroxylase 1) Mus musculus
Analyze
Symbol: Bbox1
Name: gamma-butyrobetaine hydroxylase 1
RGD ID: 732172
MGI Page MGI
Description: Enables gamma-butyrobetaine dioxygenase activity. Involved in carnitine biosynthetic process. Located in mitochondrion. Is active in cytosol. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and retina. Orthologous to human BBOX1 (gamma-butyrobetaine hydroxylase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI874739; butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase); gamma-BBH; gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase; gamma-butyrobetaine,2-oxoglutarate dioxygenase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392110,094,401 - 110,145,158 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2110,093,042 - 110,144,905 (-)EnsemblGRCm39 Ensembl
GRCm382110,264,056 - 110,314,813 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2110,262,697 - 110,314,560 (-)EnsemblGRCm38mm10GRCm38
MGSCv372110,105,240 - 110,145,882 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362110,065,922 - 110,106,564 (-)NCBIMGSCv36mm8
Celera2111,425,130 - 111,465,702 (-)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
(R)-carnitine  (ISO)
1-benzylpiperazine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,4,7,8-Pentachlorodibenzofuran  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4-(trimethylammonio)butanoate  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
aluminium atom  (ISO)
aluminium(0)  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
coumarin  (ISO)
cycloheximide  (ISO)
cyclosporin A  (EXP,ISO)
D-mannitol  (EXP)
diquat  (EXP)
doxorubicin  (ISO)
endosulfan  (ISO)
flutamide  (ISO)
glafenine  (ISO)
hydrogen peroxide  (ISO)
isoniazide  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
metacetamol  (EXP)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
nitrofen  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
potassium bromate  (ISO)
potassium dichromate  (EXP)
propiconazole  (EXP)
Propiverine  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (EXP)
sodium dichromate  (ISO)
streptozocin  (ISO)
succimer  (EXP)
Tesaglitazar  (ISO)
tetrachloromethane  (EXP,ISO)
tetracycline  (EXP)
thioacetamide  (ISO)
tolcapone  (ISO)
troglitazone  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
carnitine biosynthetic process  (IBA,IEA,IGI,ISO,ISS)

Cellular Component
cytosol  (IDA)
mitochondrion  (HDA,IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14681479   PMID:15489334   PMID:15535801   PMID:16141072   PMID:16141073   PMID:17692817  
PMID:18614015   PMID:18945875   PMID:19474196   PMID:21267068   PMID:21549104   PMID:21677750   PMID:21873635   PMID:22837474   PMID:22999781   PMID:24194600   PMID:27626380   PMID:29065368  
PMID:30157441   PMID:31609468   PMID:32325033   PMID:38355793  


Genomics

Comparative Map Data
Bbox1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392110,094,401 - 110,145,158 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2110,093,042 - 110,144,905 (-)EnsemblGRCm39 Ensembl
GRCm382110,264,056 - 110,314,813 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2110,262,697 - 110,314,560 (-)EnsemblGRCm38mm10GRCm38
MGSCv372110,105,240 - 110,145,882 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362110,065,922 - 110,106,564 (-)NCBIMGSCv36mm8
Celera2111,425,130 - 111,465,702 (-)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.7NCBI
BBOX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381127,040,815 - 27,127,809 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1127,040,725 - 27,127,809 (+)EnsemblGRCh38hg38GRCh38
GRCh371127,062,362 - 27,149,356 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361127,019,085 - 27,105,930 (+)NCBINCBI36Build 36hg18NCBI36
Build 341127,019,573 - 27,105,930NCBI
Celera1127,207,166 - 27,294,016 (+)NCBICelera
Cytogenetic Map11p14.2NCBI
HuRef1126,759,908 - 26,847,062 (+)NCBIHuRef
CHM1_11127,061,931 - 27,148,767 (+)NCBICHM1_1
T2T-CHM13v2.01127,181,297 - 27,268,300 (+)NCBIT2T-CHM13v2.0
Bbox1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83117,277,226 - 117,326,383 (-)NCBIGRCr8
mRatBN7.2396,822,654 - 96,871,786 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl396,822,655 - 96,871,458 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3100,395,476 - 100,434,388 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03108,994,430 - 109,033,342 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03106,746,656 - 106,785,585 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03101,425,684 - 101,474,848 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3101,427,055 - 101,474,890 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03108,023,621 - 108,070,883 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4395,747,735 - 95,786,852 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1395,644,162 - 95,683,280 (-)NCBI
Celera395,835,564 - 95,874,303 (-)NCBICelera
Cytogenetic Map3q34NCBI
Bbox1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554766,368,842 - 6,433,797 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554766,368,842 - 6,433,797 (+)NCBIChiLan1.0ChiLan1.0
BBOX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2929,241,406 - 29,330,010 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11129,241,841 - 29,330,440 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,995,120 - 27,083,832 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11126,898,529 - 26,986,705 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1126,898,529 - 26,986,705 (+)Ensemblpanpan1.1panPan2
BBOX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12147,707,648 - 47,766,732 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2147,706,717 - 47,766,503 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2147,198,477 - 47,257,514 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02148,848,545 - 48,906,661 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2148,847,346 - 48,906,642 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12147,834,272 - 47,892,256 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02148,002,172 - 48,061,307 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02148,588,367 - 48,647,500 (+)NCBIUU_Cfam_GSD_1.0
Bbox1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494736,893,678 - 36,958,956 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365406,048,472 - 6,153,731 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365406,048,481 - 6,113,627 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BBOX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl233,227,974 - 33,296,559 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1233,227,965 - 33,296,013 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2235,864,213 - 35,883,328 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BBOX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1137,970,238 - 38,063,854 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl137,967,283 - 38,062,244 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038135,283,933 - 135,376,803 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bbox1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476616,903,323 - 16,957,584 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476616,903,327 - 16,962,176 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:732
Count of miRNA genes:500
Interacting mature miRNAs:576
Transcripts:ENSMUST00000046233, ENSMUST00000133608
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
4141448Mpaps1_mmicrophthalmia anophthalmia susceptibility 1 (mouse)Not determined97028557112115196Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103095716129213005Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse

Markers in Region
AI874739  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382110,264,073 - 110,264,206UniSTSGRCm38
MGSCv372110,104,230 - 110,104,363UniSTSGRCm37
Celera2111,424,120 - 111,424,253UniSTS
Cytogenetic Map2E3UniSTS
Whitehead/MRC_RH21431.18UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000046233   ⟹   ENSMUSP00000046302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2110,093,042 - 110,136,086 (-)Ensembl
GRCm38.p6 Ensembl2110,262,697 - 110,305,741 (-)Ensembl
Ensembl Acc Id: ENSMUST00000133608   ⟹   ENSMUSP00000116663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2110,122,852 - 110,144,905 (-)Ensembl
GRCm38.p6 Ensembl2110,292,507 - 110,314,560 (-)Ensembl
RefSeq Acc Id: NM_001413162   ⟹   NP_001400091
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392110,094,403 - 110,144,904 (-)NCBI
RefSeq Acc Id: NM_130452   ⟹   NP_569719
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392110,094,403 - 110,136,088 (-)NCBI
GRCm382110,265,083 - 110,305,725 (-)NCBI
MGSCv372110,105,240 - 110,145,882 (-)RGD
Celera2111,425,130 - 111,465,702 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_182116
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392110,094,403 - 110,136,088 (-)NCBI
RefSeq Acc Id: XM_006498823   ⟹   XP_006498886
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392110,094,401 - 110,145,158 (-)NCBI
GRCm382110,264,056 - 110,314,813 (-)NCBI
Sequence:
RefSeq Acc Id: NP_569719   ⟸   NM_130452
- UniProtKB: Q924Y0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006498886   ⟸   XM_006498823
- Peptide Label: isoform X1
- UniProtKB: Q924Y0 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000046302   ⟸   ENSMUST00000046233
Ensembl Acc Id: ENSMUSP00000116663   ⟸   ENSMUST00000133608
RefSeq Acc Id: NP_001400091   ⟸   NM_001413162
- UniProtKB: Q924Y0 (UniProtKB/Swiss-Prot)
Protein Domains
Gamma-butyrobetaine hydroxylase-like N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q924Y0-F1-model_v2 AlphaFold Q924Y0 1-387 view protein structure

Promoters
RGD ID:6830877
Promoter ID:MM_KWN:30967
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:ENSMUST00000046233
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362110,145,621 - 110,146,121 (-)MPROMDB
RGD ID:6830878
Promoter ID:MM_KWN:30968
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000035878
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362110,154,721 - 110,155,221 (-)MPROMDB
RGD ID:6878188
Promoter ID:EPDNEW_M2545
Type:initiation region
Name:Bbox1_1
Description:Mus musculus butyrobetaine , 2-oxoglutarate dioxygenase 1 (gamma-butyrobetainehydroxylase) , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382110,305,743 - 110,305,803EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1891372 AgrOrtholog
Ensembl Genes ENSMUSG00000041660 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000046233 ENTREZGENE
  ENSMUST00000046233.9 UniProtKB/Swiss-Prot
  ENSMUST00000133608.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2020.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.60.130.10 UniProtKB/Swiss-Prot
InterPro AlphaKG_dependent_hydroxylases UniProtKB/Swiss-Prot
  GBBH UniProtKB/Swiss-Prot
  GBBH-like_N UniProtKB/TrEMBL
  GBBH-like_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GBH-like_N UniProtKB/Swiss-Prot
  TauD-like_sf UniProtKB/Swiss-Prot
  TauD/TfdA-like UniProtKB/Swiss-Prot
KEGG Report mmu:170442 UniProtKB/Swiss-Prot
MGD MGI:1891372 ENTREZGENE
NCBI Gene 170442 ENTREZGENE
PANTHER GAMMA-BUTYROBETAINE DIOXYGENASE UniProtKB/Swiss-Prot
  GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED UniProtKB/Swiss-Prot
Pfam DUF971 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TauD UniProtKB/Swiss-Prot
PhenoGen Bbox1 PhenoGen
Superfamily-SCOP Clavaminate synthase-like UniProtKB/Swiss-Prot
UniProt A2AGK3_MOUSE UniProtKB/TrEMBL
  BODG_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Bbox1  gamma-butyrobetaine hydroxylase 1  Bbox1  butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)  Symbol and/or name change 5135510 APPROVED