TMED10 (transmembrane p24 trafficking protein 10) - Rat Genome Database

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Gene: TMED10 (transmembrane p24 trafficking protein 10) Homo sapiens
Analyze
Symbol: TMED10
Name: transmembrane p24 trafficking protein 10
RGD ID: 731656
HGNC Page HGNC:16998
Description: Enables protein transmembrane transporter activity and syntaxin binding activity. Involved in several processes, including COPI-coated vesicle budding; protein localization to ERGIC; and protein transport. Located in Golgi apparatus; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Part of gamma-secretase complex. Biomarker of Alzheimer's disease.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 21 kDa transmembrane trafficking protein; 21 kDa transmembrane-trafficking protein; p23; p24 family protein delta-1; P24(DELTA); p24d1; p24delta; p24delta1; S31I125; S31III125; testicular tissue protein Li 206; Tmp-21-I; TMP21; transmembrane emp24 domain-containing protein 10; transmembrane emp24-like trafficking protein 10; transmembrane protein Tmp21
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: TMED10P1   TMED10P2  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381475,131,469 - 75,176,612 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1475,131,469 - 75,176,612 (-)EnsemblGRCh38hg38GRCh38
GRCh371475,598,172 - 75,643,315 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361474,667,924 - 74,713,102 (-)NCBINCBI36Build 36hg18NCBI36
Build 341474,667,925 - 74,713,045NCBI
Celera1455,635,795 - 55,680,950 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1455,766,322 - 55,811,787 (-)NCBIHuRef
CHM1_11475,535,938 - 75,581,127 (-)NCBICHM1_1
T2T-CHM13v2.01469,340,853 - 69,385,990 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
TMED10HumanAlzheimer's disease  IEP 2317276protein:decreased expression:brain cortex (human)RGD 
Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TMED10Humanintellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disability and mildClinVar 

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Object Symbol
Species
Term
Qualifier
Evidence
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Reference
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Original Reference(s)
TMED10Human1,2-dimethylhydrazine multiple interactionsISOTmed10 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of TMED10 mRNACTDPMID:22206623
TMED10Human1,2-dimethylhydrazine decreases expressionISOTmed10 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of TMED10 mRNACTDPMID:22206623
TMED10Human17alpha-ethynylestradiol affects expressionISOTmed10 (Rattus norvegicus)6480464Ethinyl Estradiol affects the expression of TMED10 mRNACTDPMID:26865667
TMED10Human2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOTmed10 (Mus musculus)64804642 more ...CTDPMID:30294300
TMED10Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISOTmed10 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of TMED10 mRNACTDPMID:32109520 and PMID:34747641
TMED10Human2,3,7,8-Tetrachlorodibenzofuran increases expressionISOTmed10 (Rattus norvegicus)64804642 more ...CTDPMID:32109520
TMED10Human3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of TMED10 mRNA more ...CTDPMID:28628672
TMED10Human4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of TMED10 mRNACTDPMID:28628672
TMED10Human4,4'-sulfonyldiphenol increases expressionEXP 6480464bisphenol S results in increased expression of TMED10 proteinCTDPMID:34186270
TMED10Human4-hydroxyphenyl retinamide decreases expressionISOTmed10 (Mus musculus)6480464Fenretinide results in decreased expression of TMED10 mRNACTDPMID:28973697
TMED10Humanacrylamide increases expressionISOTmed10 (Rattus norvegicus)6480464Acrylamide results in increased expression of TMED10 mRNACTDPMID:28959563
TMED10Humanaflatoxin B1 decreases expressionISOTmed10 (Mus musculus)6480464Aflatoxin B1 results in decreased expression of TMED10 mRNACTDPMID:19770486
TMED10Humanammonium chloride affects expressionISOTmed10 (Rattus norvegicus)6480464Ammonium Chloride affects the expression of TMED10 mRNACTDPMID:16483693
TMED10Humanampicillin multiple interactionsISOTmed10 (Rattus norvegicus)6480464[Ampicillin co-treated with Neomycin co-treated with Gentamicins co-treated with Metronidazole co-treated with Vancomycin] results in increased expression of TMED10 proteinCTDPMID:30545405
TMED10Humanantirheumatic drug decreases expressionEXP 6480464Antirheumatic Agents results in decreased expression of TMED10 mRNACTDPMID:24449571
TMED10Humanaristolochic acid A decreases expressionEXP 6480464aristolochic acid I results in decreased expression of TMED10 mRNACTDPMID:33212167
TMED10HumanAroclor 1254 decreases expressionISOTmed10 (Mus musculus)6480464Chlorodiphenyl (54% Chlorine) results in decreased expression of TMED10 mRNACTDPMID:23650126
TMED10Humanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of TMED10 intronCTDPMID:30157460
TMED10Humanbenzo[e]pyrene increases methylationEXP 6480464benzo(e)pyrene results in increased methylation of TMED10 intronCTDPMID:30157460
TMED10Humanbis(2-ethylhexyl) phthalate increases expressionISOTmed10 (Mus musculus)6480464Diethylhexyl Phthalate results in increased expression of TMED10 mRNACTDPMID:33754040

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Biological Process
1 to 20 of 29 rows

  
Object Symbol
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Evidence
With
Reference
Notes
Source
Original Reference(s)
TMED10HumanCOPI coating of Golgi vesicle involved_inTAS 150520179 PMID:10761932UniProtPMID:10761932
TMED10HumanCOPI-coated vesicle budding involved_inIDA 150520179 PMID:10052452UniProtPMID:10052452
TMED10HumanCOPII vesicle coating involved_inTAS 150520179 PMID:20427317UniProtPMID:20427317
TMED10Humancytosol to ERGIC protein transport involved_inIMP 150520179 PMID:32272059UniProtPMID:32272059
TMED10Humanendoplasmic reticulum to Golgi vesicle-mediated transport involved_inTAS 150520179 PMID:20427317UniProtPMID:20427317
TMED10Humanendoplasmic reticulum to Golgi vesicle-mediated transport involved_inIBAFB:FBgn0029709 more ...150520179 GO_CentralGO_REF:0000033
TMED10HumanGolgi organization  ISOTmed10 (Rattus norvegicus)9068941 RGDPMID:9914165 and REF_RGD_ID:2317252
TMED10HumanGolgi organization involved_inIBAMGI:1915831 more ...150520179 GO_CentralGO_REF:0000033
TMED10HumanGolgi organization involved_inIEAUniProtKB:Q9D1D4 and ensembl:ENSMUSP00000037583150520179 EnsemblGO_REF:0000107
TMED10Humanintracellular protein transport involved_inIDA 150520179 PMID:20427317UniProtPMID:20427317
TMED10Humanintracellular protein transport involved_inIBAPANTHER:PTN000516376 more ...150520179 GO_CentralGO_REF:0000033
TMED10Humankidney development  ISOTmed10 (Rattus norvegicus)9068941 RGDPMID:10893644 and REF_RGD_ID:2317251
TMED10Humannegative regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process acts_upstream_of_or_withinISOTmed10 (Mus musculus)9068941 PMID:16641999MGIPMID:16641999
TMED10Humanpositive regulation of interleukin-1 production involved_inIMP 150520179 PMID:32272059UniProtPMID:32272059
TMED10Humanpositive regulation of interleukin-1 production involved_inIEAUniProtKB:Q9D1D4 and ensembl:ENSMUSP00000037583150520179 EnsemblGO_REF:0000107
TMED10Humanpositive regulation of protein secretion involved_inIEAUniProtKB:Q9D1D4 and ensembl:ENSMUSP00000037583150520179 EnsemblGO_REF:0000107
TMED10Humanpositive regulation of protein secretion involved_inIMP 150520179 PMID:32272059UniProtPMID:32272059
TMED10Humanprotein localization to ERGIC involved_inIMP 150520179 PMID:32272059UniProtPMID:32272059
TMED10Humanprotein transmembrane transport involved_inIEAGO:0008320150520179 GOCGO_REF:0000108
TMED10Humanprotein transport involved_inIEAUniProtKB-KW:KW-0653150520179 UniProtGO_REF:0000043
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Cellular Component
1 to 20 of 42 rows

  
Object Symbol
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Reference
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Source
Original Reference(s)
TMED10Humancis-Golgi network located_inISSUniProtKB:Q63584150520179 HGNC-UCLGO_REF:0000024
TMED10HumanCOPI-coated vesicle  ISOTmed10 (Rattus norvegicus)9068941 RGDPMID:10214941 and REF_RGD_ID:2317280
TMED10HumanCOPI-coated vesicle is_active_inIBAPANTHER:PTN000516525 and Tmed10 (Rattus norvegicus)150520179 GO_CentralGO_REF:0000033
TMED10HumanCOPI-coated vesicle located_inISSUniProtKB:Q28735150520179 UniProtGO_REF:0000024
TMED10HumanCOPII-coated ER to Golgi transport vesicle is_active_inIBAPANTHER:PTN000516376 more ...150520179 GO_CentralGO_REF:0000033
TMED10Humancytoplasmic vesicle located_inIEAUniProtKB-KW:KW-0968150520179 UniProtGO_REF:0000043
TMED10Humanendoplasmic reticulum located_inIDA 150520179 PMID:12237308UniProtPMID:12237308
TMED10Humanendoplasmic reticulum is_active_inIBAFB:FBgn0264389 more ...150520179 GO_CentralGO_REF:0000033
TMED10Humanendoplasmic reticulum located_inIEAUniProtKB-KW:KW-0256150520179 UniProtGO_REF:0000043
TMED10Humanendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-0097150520179 UniProtGO_REF:0000044
TMED10Humanendoplasmic reticulum membrane located_inTAS 150520179 ReactomeReactome:R-HSA-203973 more ...
TMED10Humanendoplasmic reticulum-Golgi intermediate compartment  ISOTmed10 (Rattus norvegicus)9068941 RGDPMID:9914165 and REF_RGD_ID:2317252
TMED10Humanendoplasmic reticulum-Golgi intermediate compartment is_active_inIBAFB:FBgn0061492 more ...150520179 GO_CentralGO_REF:0000033
TMED10Humanendoplasmic reticulum-Golgi intermediate compartment located_inIEAARBA:ARBA00028710150520179 UniProtGO_REF:0000117
TMED10Humanendoplasmic reticulum-Golgi intermediate compartment located_inIDA 150520179 PMID:12237308 and PMID:32272059UniProtPMID:12237308 and PMID:32272059
TMED10Humanendoplasmic reticulum-Golgi intermediate compartment membrane located_inIEAUniProtKB-SubCell:SL-0099150520179 UniProtGO_REF:0000044
TMED10Humanendoplasmic reticulum-Golgi intermediate compartment membrane located_inTAS 150520179 ReactomeReactome:R-HSA-5694446 more ...
TMED10HumanER to Golgi transport vesicle membrane located_inTAS 150520179 ReactomeReactome:R-HSA-203973 more ...
TMED10Humangamma-secretase complex  ISOTmed10 (Rattus norvegicus)9068941 RGDPMID:19754663 and REF_RGD_ID:2317342
TMED10Humangamma-secretase complex part_ofIDA 150520179 PMID:16641999UniProtPMID:16641999
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Molecular Function
1 to 13 of 13 rows

  
1 to 13 of 13 rows

Object Symbol
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Reference
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Original Reference(s)
TMED10HumanIntellectual disability, mild  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disability and mildClinVar 

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Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Localization and regional distribution of p23/TMP21 in the brain. Vetrivel KS, etal., Neurobiol Dis. 2008 Oct;32(1):37-49. Epub 2008 Jul 3.
1 to 10 of 15 rows
PMID:7596406   PMID:8125298   PMID:8663407   PMID:9472029   PMID:9751720   PMID:10052452   PMID:10214941   PMID:10359607   PMID:10376215   PMID:10761932   PMID:11056392   PMID:11689559  
PMID:11703931   PMID:11726511   PMID:11739402   PMID:12237308   PMID:12477932   PMID:12508121   PMID:14702039   PMID:15146197   PMID:15308636   PMID:15489334   PMID:16595549   PMID:16641999  
PMID:17081065   PMID:18287528   PMID:18405662   PMID:18407958   PMID:18457437   PMID:19046380   PMID:19343178   PMID:19490893   PMID:19710022   PMID:20164256   PMID:20427317   PMID:20546612  
PMID:21219331   PMID:21319273   PMID:21454541   PMID:21545355   PMID:21699748   PMID:21873635   PMID:21875946   PMID:21988832   PMID:22190034   PMID:22204304   PMID:22268729   PMID:22299712  
PMID:22304920   PMID:22810586   PMID:22939629   PMID:23166591   PMID:23246001   PMID:23376485   PMID:23383273   PMID:23434013   PMID:23686814   PMID:24337577   PMID:24457600   PMID:25437307  
PMID:25959826   PMID:26186194   PMID:26344197   PMID:26472760   PMID:26496610   PMID:26617795   PMID:26638075   PMID:26972000   PMID:27342126   PMID:27375898   PMID:27432908   PMID:27503909  
PMID:27569046   PMID:28115518   PMID:28233271   PMID:28298427   PMID:28514442   PMID:28675297   PMID:28846114   PMID:28869606   PMID:29117863   PMID:29121065   PMID:29128334   PMID:29180619  
PMID:29229926   PMID:29507755   PMID:29509190   PMID:30352685   PMID:30463901   PMID:30821607   PMID:30833792   PMID:30884312   PMID:30996093   PMID:31056421   PMID:31073040   PMID:31091453  
PMID:31180492   PMID:31298480   PMID:31332168   PMID:31455601   PMID:31472964   PMID:31478661   PMID:31527615   PMID:31536960   PMID:31586073   PMID:31616248   PMID:31980649   PMID:31995728  
PMID:32272059   PMID:32293333   PMID:32409323   PMID:32687490   PMID:32694731   PMID:32807901   PMID:32814053   PMID:32877691   PMID:32913203   PMID:32941674   PMID:32989298   PMID:33194618  
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TMED10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381475,131,469 - 75,176,612 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1475,131,469 - 75,176,612 (-)EnsemblGRCh38hg38GRCh38
GRCh371475,598,172 - 75,643,315 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361474,667,924 - 74,713,102 (-)NCBINCBI36Build 36hg18NCBI36
Build 341474,667,925 - 74,713,045NCBI
Celera1455,635,795 - 55,680,950 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1455,766,322 - 55,811,787 (-)NCBIHuRef
CHM1_11475,535,938 - 75,581,127 (-)NCBICHM1_1
T2T-CHM13v2.01469,340,853 - 69,385,990 (-)NCBIT2T-CHM13v2.0
Tmed10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391285,387,388 - 85,421,491 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1285,387,388 - 85,421,621 (-)EnsemblGRCm39 Ensembl
GRCm381285,340,614 - 85,374,717 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1285,340,614 - 85,374,847 (-)EnsemblGRCm38mm10GRCm38
MGSCv371286,681,564 - 86,715,667 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361286,229,717 - 86,263,826 (-)NCBIMGSCv36mm8
Celera1286,798,198 - 86,832,321 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1239.65NCBI
Tmed10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86110,722,887 - 110,757,743 (-)NCBIGRCr8
mRatBN7.26104,991,843 - 105,026,705 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6104,991,838 - 105,026,753 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6105,161,423 - 105,196,288 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06105,460,299 - 105,495,169 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06104,829,957 - 104,864,825 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06109,169,739 - 109,205,004 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6109,169,741 - 109,205,004 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06116,347,952 - 116,383,217 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46109,396,504 - 109,411,292 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16109,399,961 - 109,414,748 (-)NCBI
Celera6102,814,696 - 102,848,831 (-)NCBICelera
Cytogenetic Map6q31NCBI
Tmed10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955523393,706 - 436,583 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955523393,632 - 438,114 (+)NCBIChiLan1.0ChiLan1.0
TMED10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21576,213,773 - 76,259,034 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11475,430,277 - 75,475,523 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01455,683,121 - 55,728,365 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11474,526,733 - 74,572,000 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1474,526,733 - 74,572,000 (-)Ensemblpanpan1.1panPan2
TMED10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1848,221,372 - 48,257,242 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha847,905,475 - 47,941,324 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0848,449,034 - 48,484,899 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl848,448,864 - 48,484,870 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1848,119,735 - 48,155,593 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0848,141,008 - 48,176,865 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0848,539,708 - 48,575,575 (-)NCBIUU_Cfam_GSD_1.0
Tmed10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864027,765,073 - 27,803,237 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364884,265,731 - 4,303,948 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364884,265,731 - 4,303,895 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMED10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl798,327,408 - 98,362,606 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1798,327,402 - 98,362,652 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27104,171,513 - 104,206,745 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMED10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12452,349,869 - 52,392,436 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2452,346,815 - 52,392,525 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605340,577,148 - 40,620,562 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmed10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473426,514,594 - 26,549,374 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473426,514,594 - 26,551,361 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in TMED10
10 total Variants

1 to 10 of 29 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 14q24.3(chr14:73877072-78042422)x1 copy number loss See cases [RCV000051548] Chr14:73877072..78042422 [GRCh38]
Chr14:74343775..78508765 [GRCh37]
Chr14:73413528..77578518 [NCBI36]
Chr14:14q24.3		 pathogenic
GRCh38/hg38 14q24.2-32.2(chr14:72787506-99596719)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052293]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052293]|See cases [RCV000052293] Chr14:72787506..99596719 [GRCh38]
Chr14:73254214..100063056 [GRCh37]
Chr14:72323967..99132809 [NCBI36]
Chr14:14q24.2-32.2		 pathogenic
GRCh37/hg19 14q24.2-q24.3(chr14:73152115..77698582) deletion Intellectual disability, mild [RCV000190520] Chr14:73152115..77698582 [GRCh37]
Chr14:14q24.2-24.3		 pathogenic|likely pathogenic
GRCh38/hg38 14q24.1-31.1(chr14:69562099-81975384)x1 copy number loss See cases [RCV000134154] Chr14:69562099..81975384 [GRCh38]
Chr14:70028816..82441728 [GRCh37]
Chr14:69098569..81511481 [NCBI36]
Chr14:14q24.1-31.1		 pathogenic
GRCh38/hg38 14q24.3-32.33(chr14:73655772-106879298)x3 copy number gain See cases [RCV000134000] Chr14:73655772..106879298 [GRCh38]
Chr14:74122475..107287505 [GRCh37]
Chr14:73192228..106358550 [NCBI36]
Chr14:14q24.3-32.33		 pathogenic
GRCh38/hg38 14q24.3(chr14:74986195-76399258)x1 copy number loss See cases [RCV000137114] Chr14:74986195..76399258 [GRCh38]
Chr14:75452898..76865601 [GRCh37]
Chr14:74522651..75935354 [NCBI36]
Chr14:14q24.3		 uncertain significance
GRCh38/hg38 14q24.3-31.1(chr14:73343213-78835059)x1 copy number loss See cases [RCV000143265] Chr14:73343213..78835059 [GRCh38]
Chr14:73809921..79301402 [GRCh37]
Chr14:72879674..78371155 [NCBI36]
Chr14:14q24.3-31.1		 pathogenic|likely pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19794561-107234280)x3 copy number gain See cases [RCV000446256] Chr14:19794561..107234280 [GRCh37]
Chr14:14q11.2-32.33		 pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20151149-106855263)x3 copy number gain See cases [RCV000135543] Chr14:20151149..106855263 [GRCh38]
Chr14:20619308..107263478 [GRCh37]
Chr14:19689148..106334523 [NCBI36]
Chr14:14q11.2-32.33		 pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20043514-106877229)x3 copy number gain See cases [RCV000143373] Chr14:20043514..106877229 [GRCh38]
Chr14:20511673..107285437 [GRCh37]
Chr14:19581513..106356482 [NCBI36]
Chr14:14q11.2-32.33		 pathogenic
1 to 10 of 29 rows

Predicted Target Of
Summary Value
Count of predictions:2193
Count of miRNA genes:1015
Interacting mature miRNAs:1213
Transcripts:ENST00000303575, ENST00000555036, ENST00000555085, ENST00000555873, ENST00000556969, ENST00000557670
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407008738GWAS657714_Hparental longevity QTL GWAS657714 (human)0.000007total life span (VT:0001661)147513245275132453Human
597232078GWAS1328152_Hheel bone mineral density QTL GWAS1328152 (human)4e-15heel bone mineral densitybone mineral density (CMO:0001226)147513613175136132Human
597101544GWAS1197618_Hcoronary artery disease QTL GWAS1197618 (human)4e-08coronary artery disease147515241575152416Human
597620369GWAS1677229_HAlzheimer disease QTL GWAS1677229 (human)3e-11Alzheimer disease147516461675164617Human

A002E08  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371475,598,234 - 75,598,449UniSTSGRCh37
GRCh378146,224,008 - 146,224,221UniSTSGRCh37
Build 368146,194,812 - 146,195,025RGDNCBI36
Celera8142,401,044 - 142,401,257RGD
Celera1455,635,858 - 55,636,073UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map8q24.3UniSTS
HuRef8141,339,758 - 141,339,971UniSTS
HuRef1455,766,385 - 55,766,600UniSTS
GeneMap99-GB4 RH Map14201.19UniSTS
Whitehead-RH Map14268.5UniSTS
RH44072  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378146,221,326 - 146,221,485UniSTSGRCh37
GRCh371475,601,032 - 75,601,191UniSTSGRCh37
Build 368146,192,130 - 146,192,289RGDNCBI36
Celera8142,398,362 - 142,398,521RGD
Celera1455,638,657 - 55,638,816UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map14q24.3UniSTS
HuRef8141,337,075 - 141,337,234UniSTS
HuRef1455,769,184 - 55,769,343UniSTS
RH66374  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371475,598,266 - 75,598,453UniSTSGRCh37
Build 361474,668,019 - 74,668,206RGDNCBI36
Celera1455,635,890 - 55,636,077RGD
Cytogenetic Map14q24.3UniSTS
HuRef1455,766,417 - 55,766,604UniSTS
GeneMap99-GB4 RH Map14201.09UniSTS
G35874  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371475,624,705 - 75,624,866UniSTSGRCh37
Build 361474,694,458 - 74,694,619RGDNCBI36
Celera1455,662,339 - 55,662,500RGD
Cytogenetic Map14q24.3UniSTS
HuRef1455,793,176 - 55,793,337UniSTS
A002P02  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371475,601,000 - 75,601,131UniSTSGRCh37
GRCh378146,221,386 - 146,221,517UniSTSGRCh37
Build 368146,192,190 - 146,192,321RGDNCBI36
Celera1455,638,625 - 55,638,756UniSTS
Celera8142,398,422 - 142,398,553RGD
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map8q24.3UniSTS
HuRef1455,769,152 - 55,769,283UniSTS
HuRef8141,337,135 - 141,337,266UniSTS
GeneMap99-GB4 RH Map14201.29UniSTS
RH45000  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371475,605,569 - 75,605,669UniSTSGRCh37
Build 361474,675,322 - 74,675,422RGDNCBI36
Celera1455,643,194 - 55,643,294RGD
Cytogenetic Map14q24.3UniSTS
HuRef1455,773,992 - 55,774,092UniSTS
GeneMap99-GB4 RH Map14201.09UniSTS
D10S16   No map positions available.
SGC31604  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371475,601,605 - 75,602,567UniSTSGRCh37
Celera1455,639,230 - 55,640,192UniSTS
Cytogenetic Map14q24.3UniSTS
HuRef1455,769,757 - 55,770,719UniSTS
GeneMap99-GB4 RH Map14202.99UniSTS
Whitehead-RH Map14271.1UniSTS
D10S16  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map2q11.2-q12UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map3p22UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map5q21-q22UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
Cytogenetic Map1q24.1UniSTS
Cytogenetic Map7q32.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q11.2-q12.1UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map4q34UniSTS
Cytogenetic Map2p22-p21UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map1p36.23UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map11p15.3-p15.1UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic MapXp22.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map3q26UniSTS
Cytogenetic Map12p12.1-p11.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic MapXq23UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map5p15.1UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map17qterUniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map20q12-q13.12UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map5q31.2-q34UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map1pter-q31.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map3p23-p21UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map2q24UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1p36.1-p34UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map3p11.1UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic MapXq21UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map15q24.2UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map4q35UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map3p23UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map4p15.3UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map19qterUniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map17pUniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map2p13.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map3q26.2UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1


1 to 29 of 29 rows
RefSeq Transcripts NM_006827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC007055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ004913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK222972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK308864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK312384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL049780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL691403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG675810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX248754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX504393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN420777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB528262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM005519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF694939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L40391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L40397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U61734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X97442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 29 of 29 rows

Ensembl Acc Id: ENST00000303575   ⟹   ENSP00000303145
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1475,131,469 - 75,176,612 (-)Ensembl
Ensembl Acc Id: ENST00000555036
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1475,134,440 - 75,147,760 (-)Ensembl
Ensembl Acc Id: ENST00000555085
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1475,147,555 - 75,176,612 (-)Ensembl
Ensembl Acc Id: ENST00000555873   ⟹   ENSP00000450726
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1475,134,500 - 75,176,597 (-)Ensembl
Ensembl Acc Id: ENST00000556969
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1475,133,938 - 75,147,781 (-)Ensembl
Ensembl Acc Id: ENST00000557670
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1475,134,356 - 75,147,897 (-)Ensembl
Ensembl Acc Id: ENST00000622441
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1475,175,921 - 75,176,532 (-)Ensembl
RefSeq Acc Id: NM_006827   ⟹   NP_006818
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381475,131,469 - 75,176,612 (-)NCBI
GRCh371475,598,171 - 75,643,349 (-)ENTREZGENE
GRCh371475,598,171 - 75,643,349 (-)NCBI
Build 361474,667,924 - 74,713,102 (-)NCBI Archive
HuRef1455,766,322 - 55,811,787 (-)ENTREZGENE
CHM1_11475,535,938 - 75,581,127 (-)NCBI
T2T-CHM13v2.01469,340,853 - 69,385,990 (-)NCBI
Sequence:
RefSeq Acc Id: NP_006818   ⟸   NM_006827
- Peptide Label: precursor
- UniProtKB: Q86TC2 (UniProtKB/Swiss-Prot),   Q16536 (UniProtKB/Swiss-Prot),   Q15602 (UniProtKB/Swiss-Prot),   B2R605 (UniProtKB/Swiss-Prot),   Q86TS5 (UniProtKB/Swiss-Prot),   P49755 (UniProtKB/Swiss-Prot),   A0A024R6I3 (UniProtKB/TrEMBL),   Q53GF9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000450726   ⟸   ENST00000555873
Ensembl Acc Id: ENSP00000303145   ⟸   ENST00000303575
GOLD

Name Modeler Protein Id AA Range Protein Structure
AF-P49755-F1-model_v2 AlphaFold P49755 1-219 view protein structure

RGD ID:6791404
Promoter ID:HG_KWN:19813
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_006827,   UC010ASH.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361474,712,691 - 74,713,517 (-)MPROMDB
RGD ID:6851206
Promoter ID:EP73399
Type:initiation region
Name:HS_TMP21
Description:Transmembrane trafficking protein.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 361474,713,053 - 74,713,113EPD
RGD ID:7228175
Promoter ID:EPDNEW_H19833
Type:initiation region
Name:TMED10_1
Description:transmembrane p24 trafficking protein 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381475,176,603 - 75,176,663EPDNEW


1 to 32 of 32 rows
Database
Acc Id
Source(s)
COSMIC TMED10 COSMIC
Ensembl Genes ENSG00000170348 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000303575 ENTREZGENE
  ENST00000303575.9 UniProtKB/Swiss-Prot
GTEx ENSG00000170348 GTEx
HGNC ID HGNC:16998 ENTREZGENE
Human Proteome Map TMED10 Human Proteome Map
InterPro GOLD_dom UniProtKB/Swiss-Prot
  TMP21-related UniProtKB/Swiss-Prot
KEGG Report hsa:10972 UniProtKB/Swiss-Prot
NCBI Gene 10972 ENTREZGENE
OMIM 605406 OMIM
PANTHER PTHR22811 UniProtKB/Swiss-Prot
Pfam EMP24_GP25L UniProtKB/Swiss-Prot
PharmGKB PA128394579 PharmGKB, RGD
PROSITE GOLD UniProtKB/Swiss-Prot
SMART EMP24_GP25L UniProtKB/Swiss-Prot
UniProt A0A024R6I3 ENTREZGENE, UniProtKB/TrEMBL
  B2R605 ENTREZGENE
  G3V2K7_HUMAN UniProtKB/TrEMBL
  P49755 ENTREZGENE
  Q15602 ENTREZGENE
  Q16536 ENTREZGENE
  Q53GF9 ENTREZGENE, UniProtKB/TrEMBL
  Q86TC2 ENTREZGENE
  Q86TS5 ENTREZGENE
  TMEDA_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B2R605 UniProtKB/Swiss-Prot
  Q15602 UniProtKB/Swiss-Prot
  Q16536 UniProtKB/Swiss-Prot
  Q86TC2 UniProtKB/Swiss-Prot
  Q86TS5 UniProtKB/Swiss-Prot
1 to 32 of 32 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-18 TMED10  transmembrane p24 trafficking protein 10  TMED10  transmembrane emp24-like trafficking protein 10 (yeast)  Symbol and/or name change 5135510 APPROVED