NEK9 (NIMA related kinase 9) - Rat Genome Database

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Gene: NEK9 (NIMA related kinase 9) Canis lupus familiaris
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Symbol: NEK9
Name: NIMA related kinase 9
RGD ID: 12375274
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); ASSOCIATED WITH ARTHROGRYPOSIS, PERTHES DISEASE, AND UPWARD GAZE PALSY (ortholog); cleft palate (ortholog); intellectual disability (ortholog); FOUND IN centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: NIMA (never in mitosis gene a)- related kinase 9; serine/threonine-protein kinase Nek9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1848,180,203 - 48,218,430 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl848,183,071 - 48,257,646 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha847,864,320 - 47,902,676 (-)NCBI
ROS_Cfam_1.0848,407,827 - 48,446,234 (-)NCBI
UMICH_Zoey_3.1848,078,603 - 48,116,941 (-)NCBI
UNSW_CanFamBas_1.0848,099,872 - 48,138,217 (-)NCBI
UU_Cfam_GSD_1.0848,498,571 - 48,536,910 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
NEK9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1848,180,203 - 48,218,430 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl848,183,071 - 48,257,646 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha847,864,320 - 47,902,676 (-)NCBI
ROS_Cfam_1.0848,407,827 - 48,446,234 (-)NCBI
UMICH_Zoey_3.1848,078,603 - 48,116,941 (-)NCBI
UNSW_CanFamBas_1.0848,099,872 - 48,138,217 (-)NCBI
UU_Cfam_GSD_1.0848,498,571 - 48,536,910 (-)NCBI
NEK9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1475,079,353 - 75,127,344 (-)EnsemblGRCh38hg38GRCh38
GRCh381475,079,353 - 75,127,637 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371475,546,056 - 75,593,751 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361474,620,728 - 74,663,389 (-)NCBINCBI36hg18NCBI36
Build 341474,620,727 - 74,663,389NCBI
Celera1455,586,461 - 55,631,402 (-)NCBI
Cytogenetic Map14q24.3NCBI
HuRef1455,716,982 - 55,761,929 (-)NCBIHuRef
CHM1_11475,486,591 - 75,531,543 (-)NCBICHM1_1
Nek9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391285,346,288 - 85,386,136 (-)NCBIGRCm39mm39
GRCm39 Ensembl1285,346,288 - 85,386,136 (-)Ensembl
GRCm381285,299,514 - 85,339,362 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1285,299,514 - 85,339,362 (-)EnsemblGRCm38mm10GRCm38
MGSCv371286,640,464 - 86,680,312 (-)NCBIGRCm37mm9NCBIm37
MGSCv361286,188,616 - 86,228,440 (-)NCBImm8
Celera1286,757,015 - 86,796,871 (-)NCBICelera
Cytogenetic Map12D2NCBI
Nek9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26104,944,056 - 104,984,538 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl6104,944,056 - 104,984,538 (-)Ensembl
Rnor_6.06109,121,524 - 109,162,433 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6109,124,330 - 109,162,267 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06116,390,523 - 116,435,517 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46109,345,437 - 109,389,174 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16109,351,642 - 109,394,468 (-)NCBI
Celera6102,766,488 - 102,807,366 (-)NCBICelera
Cytogenetic Map6q31NCBI
Nek9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955523446,748 - 482,246 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955523443,832 - 483,397 (+)NCBIChiLan1.0ChiLan1.0
NEK9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11474,478,387 - 74,522,320 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1474,478,387 - 74,522,320 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01455,633,667 - 55,678,670 (-)NCBIMhudiblu_PPA_v0panPan3
Nek9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864027,807,701 - 27,847,583 (+)NCBI
SpeTri2.0NW_0049364884,221,099 - 4,261,401 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEK9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl798,275,976 - 98,322,469 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1798,275,973 - 98,322,072 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27104,120,094 - 104,166,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NEK9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12452,297,211 - 52,342,359 (-)NCBI
ChlSab1.1 Ensembl2452,296,261 - 52,342,724 (-)Ensembl
Vero_WHO_p1.0NW_02366605340,527,142 - 40,572,456 (-)NCBI
Nek9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473426,557,208 - 26,600,777 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 5 16 6 6 6 6 10 6
Low 1 6 6 6 6 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000026967   ⟹   ENSCAFP00000025070
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl848,183,071 - 48,218,430 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000026979   ⟹   ENSCAFP00000025081
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl848,224,222 - 48,257,646 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000074339   ⟹   ENSCAFP00000058160
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl848,223,744 - 48,257,646 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000090739   ⟹   ENSCAFP00000053232
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl848,183,071 - 48,257,207 (-)Ensembl
RefSeq Acc Id: XM_038483816   ⟹   XP_038339744
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1848,078,603 - 48,116,941 (-)NCBI
RefSeq Acc Id: XM_038545297   ⟹   XP_038401225
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0848,498,571 - 48,536,910 (-)NCBI
RefSeq Acc Id: XM_038609393   ⟹   XP_038465321
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0848,099,872 - 48,138,217 (-)NCBI
RefSeq Acc Id: XM_038674218   ⟹   XP_038530146
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0848,407,827 - 48,446,234 (-)NCBI
RefSeq Acc Id: XM_547912   ⟹   XP_547912
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1848,180,203 - 48,218,430 (-)NCBI
Dog10K_Boxer_Tasha847,864,320 - 47,902,676 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038339744 (Get FASTA)   NCBI Sequence Viewer  
  XP_038401225 (Get FASTA)   NCBI Sequence Viewer  
  XP_038465321 (Get FASTA)   NCBI Sequence Viewer  
  XP_038530146 (Get FASTA)   NCBI Sequence Viewer  
  XP_547912 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_547912   ⟸   XM_547912
- Sequence:
RefSeq Acc Id: ENSCAFP00000058160   ⟸   ENSCAFT00000074339
RefSeq Acc Id: ENSCAFP00000053232   ⟸   ENSCAFT00000090739
RefSeq Acc Id: ENSCAFP00000025070   ⟸   ENSCAFT00000026967
RefSeq Acc Id: ENSCAFP00000025081   ⟸   ENSCAFT00000026979
RefSeq Acc Id: XP_038339744   ⟸   XM_038483816
RefSeq Acc Id: XP_038465321   ⟸   XM_038609393
RefSeq Acc Id: XP_038530146   ⟸   XM_038674218
RefSeq Acc Id: XP_038401225   ⟸   XM_038545297


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017028 Ensembl, ENTREZGENE
NCBI Gene NEK9 ENTREZGENE
VGNC ID VGNC:43735 ENTREZGENE