Tmed10-ps (transmembrane p24 trafficking protein 10, pseudogene) - Rat Genome Database

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Gene: Tmed10-ps (transmembrane p24 trafficking protein 10, pseudogene) Mus musculus
Analyze
No known orthologs.
Symbol: Tmed10-ps
Name: transmembrane p24 trafficking protein 10, pseudogene
RGD ID: 2299567
MGI Page MGI
Description: Predicted to enable protein transmembrane transporter activity and syntaxin binding activity. Predicted to be involved in several processes, including COPI-coated vesicle budding; protein localization to ERGIC; and protein transport. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Predicted to be part of gamma-secretase complex.
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: 100042773; ENSMUSG00000078916; Gm4024; predicted gene, 100042773; predicted pseudogene 4024; transmembrane emp24 domain-containing protein 10-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391336,174,240 - 36,180,221 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1336,174,844 - 36,175,503 (-)EnsemblGRCm39 Ensembl
GRCm381335,990,257 - 35,995,172 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1335,990,861 - 35,991,520 (-)EnsemblGRCm38mm10GRCm38
MGSCv371336,082,730 - 36,083,411 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361336,082,064 - 36,083,422 (-)NCBIMGSCv36mm8
Celera1337,106,535 - 37,107,216 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1314.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmed10-psMouseCOPI-coated vesicle budding involved_inISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119
Tmed10-psMousecytosol to ERGIC protein transport involved_inISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119
Tmed10-psMouseintracellular protein transport involved_inISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119
Tmed10-psMousepositive regulation of interleukin-1 production involved_inISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119
Tmed10-psMousepositive regulation of protein secretion involved_inISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119
Tmed10-psMouseprotein localization to ERGIC involved_inISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119
Tmed10-psMouseregulation of amyloid-beta formation involved_inISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmed10-psMouseendoplasmic reticulum located_inISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119
Tmed10-psMouseendoplasmic reticulum-Golgi intermediate compartment located_inISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119
Tmed10-psMousegamma-secretase complex part_ofISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119
Tmed10-psMouseGolgi apparatus located_inISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmed10-psMouseprotein transmembrane transporter activity enablesISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119
Tmed10-psMousesyntaxin binding enablesISOUniProtKB:P497552290270 GO_CentralGO_REF:0000119


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Tmed10-ps
219 total Variants

1 to 10 of 31 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
1301455Bmd3_mbone mineral density 3 (mouse)Not determined13347761237477820Mouse

1 to 10 of 31 rows
UniSTS:488776  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381335,990,485 - 35,991,546UniSTSGRCm38
MGSCv371336,082,354 - 36,083,415UniSTSGRCm37
Celera1337,106,159 - 37,107,220UniSTS
Cytogenetic Map13A3.3UniSTS
Cytogenetic Map12D2UniSTS






RefSeq Transcripts XM_036158265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000224867
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1336,174,844 - 36,175,503 (-)Ensembl
GRCm38.p6 Ensembl1335,990,861 - 35,991,520 (-)Ensembl
RefSeq Acc Id: XM_036158265   ⟹   XP_036014158
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391336,174,240 - 36,180,221 (-)NCBI
Sequence:
Protein RefSeqs XP_036014158 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_036014158   ⟸   XM_036158265

RGD ID:6823861
Promoter ID:MM_KWN:13820
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000109188,   XM_911073_GM4024
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361336,083,156 - 36,083,656 (-)MPROMDB


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000114251 Ensembl
MGD MGI:3782198 ENTREZGENE
NCBI Gene 100042773 ENTREZGENE
PhenoGen Tmed10-ps PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-10-04 Tmed10-ps  transmembrane p24 trafficking protein 10, pseudogene  Gm4024  predicted pseudogene 4024  Symbol and/or name change 5135510 APPROVED
2011-07-27 Gm4024  predicted pseudogene 4024  Gm4024  predicted gene 4024  Symbol and/or name change 5135510 APPROVED