Plin2 (perilipin 2) - Rat Genome Database

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Gene: Plin2 (perilipin 2) Mus musculus
Analyze
Symbol: Plin2
Name: perilipin 2
RGD ID: 730883
MGI Page MGI
Description: Acts upstream of or within lipid storage and long-chain fatty acid transport. Located in several cellular components, including cytosol; lipid droplet; and nucleus. Is expressed in hindlimb tendon and pancreas epithelium. Orthologous to human PLIN2 (perilipin 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A; AA407157; AD; Adfp; adipophilin; adipose differentiation related protein; adipose differentiation-related protein; ADPH; Adrp; perilipin-2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Adfp-ps   Gm12551   Gm3440  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39486,545,147 - 86,588,518 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl486,566,623 - 86,588,297 (-)EnsemblGRCm39 Ensembl
GRCm38486,626,910 - 86,670,217 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl486,648,386 - 86,670,060 (-)EnsemblGRCm38mm10GRCm38
MGSCv37486,302,469 - 86,315,963 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36486,127,797 - 86,141,225 (-)NCBIMGSCv36mm8
Celera485,171,641 - 85,185,400 (-)NCBICelera
Cytogenetic Map4C4NCBI
cM Map440.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plin2MouseHypertriglyceridemia  IDA 1625752associated with ObesityRGD 
Plin2MouseInsulin Resistance  IDA 1625752associated with ObesityRGD 
Plin2Mousesteatotic liver disease  IDA 1625752associated with ObesityRGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plin2MouseExperimental Liver Cirrhosis  ISOPLIN2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Plin2Mousesteatotic liver disease  ISOPLIN2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16439473
Plin2MouseStomach Neoplasms  ISOPLIN2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16367923

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plin2Mouse(+)-schisandrin B multiple interactionsISOPlin2 (Rattus norvegicus)6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of PLIN2 mRNA]CTDPMID:31150632
Plin2Mouse(-)-epigallocatechin 3-gallate multiple interactionsISOPLIN2 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in increased expression of PLIN2 mRNACTDPMID:22079256
Plin2Mouse(1->4)-beta-D-glucan multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of PLIN2 mRNACTDPMID:36331819
Plin2Mouse(S)-nicotine decreases expressionEXP 6480464Nicotine results in decreased expression of PLIN2 proteinCTDPMID:31783125
Plin2Mouse1,1-dichloroethene increases expressionEXP 6480464vinylidene chloride results in increased expression of PLIN2 mRNACTDPMID:26682919
Plin2Mouse1,2-dimethylhydrazine multiple interactionsEXP 6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of PLIN2 mRNACTDPMID:22206623
Plin2Mouse1,2-dimethylhydrazine decreases expressionEXP 64804641 and 2-Dimethylhydrazine results in decreased expression of PLIN2 mRNACTDPMID:22206623
Plin2Mouse1,3-dinitrobenzene increases expressionISOPlin2 (Rattus norvegicus)64804643-dinitrobenzene results in increased expression of PLIN2 mRNACTDPMID:21983209
Plin2Mouse1,4-phenylenediamine increases expressionISOPLIN2 (Homo sapiens)64804644-phenylenediamine results in increased expression of PLIN2 mRNACTDPMID:16314067
Plin2Mouse1-chloro-2,4-dinitrobenzene increases expressionISOPLIN2 (Homo sapiens)6480464Dinitrochlorobenzene results in increased expression of PLIN2 mRNACTDPMID:16314067
Plin2Mouse1-naphthyl isothiocyanate increases expressionISOPlin2 (Rattus norvegicus)64804641-Naphthylisothiocyanate results in increased expression of PLIN2 mRNACTDPMID:25380136
Plin2Mouse17beta-estradiol affects expressionISOPLIN2 (Homo sapiens)6480464Estradiol affects the expression of PLIN2 mRNACTDPMID:14699072
Plin2Mouse17beta-estradiol decreases expressionISOPLIN2 (Homo sapiens)6480464Estradiol results in decreased expression of PLIN2 mRNACTDPMID:31614463
Plin2Mouse17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of PLIN2 mRNACTDPMID:39298647
Plin2Mouse17beta-estradiol increases expressionISOPlin2 (Rattus norvegicus)6480464Estradiol results in increased expression of PLIN2 mRNACTDPMID:32145629
Plin2Mouse17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of PLIN2 mRNACTDPMID:19484750
Plin2Mouse2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOPlin2 (Rattus norvegicus)6480464[3 more ...CTDPMID:16984957
Plin2Mouse2,2',4,4'-Tetrabromodiphenyl ether increases expressionISOPLIN2 (Homo sapiens)64804642 more ...CTDPMID:23146750 and PMID:35575305
Plin2Mouse2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:38040069
Plin2Mouse2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsEXP 6480464[Flame Retardants results in increased abundance of 2 more ...CTDPMID:38995820

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Biological Process
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plin2Mousecellular response to glucose starvation involved_inISSUniProtKB:Q995412290270 UniProtGO_REF:0000024
Plin2Mousecellular response to glucose starvation involved_inISOUniProtKB:Q995412290270 GO_CentralGO_REF:0000119
Plin2Mouselipid droplet disassembly involved_inISSUniProtKB:Q995412290270 UniProtGO_REF:0000024
Plin2Mouselipid droplet disassembly involved_inISOUniProtKB:Q995412290270 GO_CentralGO_REF:0000119
Plin2Mouselipid storage involved_inIBAPANTHER:PTN004450669 more ...2290270 GO_CentralGO_REF:0000033
Plin2Mouselipid storage acts_upstream_of_or_withinIDA 2290270 PMID:12562852MGIPMID:12562852
Plin2Mouselipid storage involved_inISOUniProtKB:Q995412290270 GO_CentralGO_REF:0000119
Plin2Mouselong-chain fatty acid transport acts_upstream_of_or_withinIDA 2290270 PMID:10358026MGIPMID:10358026
Plin2Mousepositive regulation of triglyceride storage involved_inIBAPANTHER:PTN004450669 more ...2290270 GO_CentralGO_REF:0000033
Plin2Mouseresponse to xenobiotic stimulus involved_inIEAUniProtKB:Q5U2U5 and ensembl:ENSRNOP000000931182290270 EnsemblGO_REF:0000107
Plin2Mouseresponse to xenobiotic stimulus  ISOPlin2 (Rattus norvegicus)9068941 RGDPMID:8579590 and REF_RGD_ID:1625757
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Cellular Component
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plin2Mousecytoplasm located_inIDA 2290270 PMID:16581799MGIPMID:16581799
Plin2Mousecytosol located_inIDA 2290270 PMID:16571721MGIPMID:16571721
Plin2Mousecytosol located_inTAS 2290270 ReactomeReactome:R-MMU-9613670
Plin2Mousecytosol is_active_inIBAPANTHER:PTN004450669 more ...2290270 GO_CentralGO_REF:0000033
Plin2Mouselipid droplet  ISOPlin2 (Rattus norvegicus)9068941 RGDPMID:15844002 and REF_RGD_ID:1625755
Plin2Mouselipid droplet located_inISOPlin2 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Plin2Mouselipid droplet part_ofISOPLIN2 (Homo sapiens)9068941 PMID:34077757UniProtPMID:34077757
Plin2Mouselipid droplet located_inIDA 2290270 PMID:12562852 and PMID:16571721MGIPMID:12562852 and PMID:16571721
Plin2Mouselipid droplet located_inISOUniProtKB:Q995412290270 GO_CentralGO_REF:0000119
Plin2Mouselipid droplet located_inTAS 2290270 ReactomeReactome:R-MMU-9613507 more ...
Plin2Mouselipid droplet is_active_inIBAPANTHER:PTN004450669 more ...2290270 GO_CentralGO_REF:0000033
Plin2Mousenucleus located_inIDA 2290270 PMID:10358026MGIPMID:10358026
Plin2Mouseplasma membrane located_inIDA 2290270 PMID:10358026MGIPMID:10358026
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Molecular Function

  

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plin2Mousehypoxia inducible factor pathway   ISOPLIN2 (Homo sapiens)6484113 PIDPID:200202
1 to 20 of 28 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plin2Mouseabnormal adipose tissue physiology  IAGP 5509061 MGIPMID:23402988
Plin2Mouseabnormal eye electrophysiology  IAGP 5509061 MGIPMID:18606814
Plin2Mouseabnormal maternal behavior  IAGP 5509061 MGIPMID:23402988
Plin2Mouseabnormal milk composition  IAGP 5509061 MGIPMID:17921437
Plin2Mouseabnormal sebaceous gland physiology  IAGP 5509061 MGIPMID:23688400
Plin2Mouseabnormal vitamin A metabolism  IAGP 5509061 MGIPMID:18606814
Plin2Mouseabnormal white fat cell morphology  IAGP 5509061 MGIPMID:23402988
Plin2Mousedecreased body weight  IAGP 5509061 MGIPMID:23402988
Plin2Mousedecreased circulating free fatty acids level  IAGP 5509061 MGIPMID:23402988
Plin2Mousedecreased circulating leptin level  IAGP 5509061 MGIPMID:23402988
Plin2Mousedecreased circulating triglyceride level  IAGP 5509061 MGIPMID:23402988
Plin2Mousedecreased epididymal fat pad weight  IAGP 5509061 MGIPMID:23402988
Plin2Mousedecreased fat cell size  IAGP 5509061 MGIPMID:23402988
Plin2Mousedecreased food intake  IAGP 5509061 MGIPMID:23402988
Plin2Mousedecreased inflammatory response  IAGP 5509061 MGIPMID:23402988
Plin2Mousedecreased liver triglyceride level  IAGP 5509061 MGIPMID:16428458
Plin2Mousedecreased liver triglyceride level  IAGP 5509061 MGIPMID:23402988
Plin2Mousedecreased subcutaneous adipose tissue amount  IAGP 5509061 MGIPMID:23402988
Plin2Mousedecreased susceptibility to diet-induced hepatic steatosis  IAGP 5509061 MGIPMID:16428458
Plin2Mousedecreased susceptibility to diet-induced hepatic steatosis  IAGP 5509061 MGIPMID:23402988
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#
Reference Title
Reference Citation
1. Mapping genes in the mouse using single-strand conformation polymorphism analysis of recombinant inbred strains and interspecific crosses. Beier DR, etal., Proc Natl Acad Sci U S A 1992 Oct 1;89(19):9102-6.
2. Reduction of hepatosteatosis and lipid levels by an adipose differentiation-related protein antisense oligonucleotide. Imai Y, etal., Gastroenterology. 2007 May;132(5):1947-54. Epub 2007 Feb 23.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Neidhardt L, etal., Mech Dev 2000 Nov;98(1-2):77-94.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. CGI-58 interacts with perilipin and is localized to lipid droplets. Possible involvement of CGI-58 mislocalization in Chanarin-Dorfman syndrome. Yamaguchi T, etal., J Biol Chem 2004 Jul 16;279(29):30490-7. Epub 2004 May 10.
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PMID:1518805   PMID:7916309   PMID:8325636   PMID:8502564   PMID:10349636   PMID:10358026   PMID:10591541   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11978849   PMID:12217895  
PMID:12477932   PMID:12562852   PMID:12591929   PMID:12804567   PMID:14610273   PMID:15075187   PMID:15336557   PMID:15731108   PMID:15782199   PMID:16115879   PMID:16141072   PMID:16141073  
PMID:16230742   PMID:16403437   PMID:16428458   PMID:16489205   PMID:16571721   PMID:16581799   PMID:16602821   PMID:16950122   PMID:16968708   PMID:17452747   PMID:17463056   PMID:17872589  
PMID:17921437   PMID:18085354   PMID:18188933   PMID:18188934   PMID:18393390   PMID:18483409   PMID:18487449   PMID:18554416   PMID:18606814   PMID:18669627   PMID:18684741   PMID:18692037  
PMID:18697835   PMID:18854426   PMID:19383873   PMID:19416849   PMID:19698802   PMID:19699172   PMID:20030713   PMID:20382704   PMID:20424269   PMID:20484013   PMID:20529882   PMID:20710016  
PMID:20883652   PMID:21267068   PMID:21383012   PMID:21430261   PMID:21566665   PMID:21677750   PMID:21873635   PMID:21878492   PMID:22028793   PMID:22139132   PMID:22426621   PMID:22427949  
PMID:22661308   PMID:22685330   PMID:22744009   PMID:22807032   PMID:23012396   PMID:23023706   PMID:23056214   PMID:23402988   PMID:23505042   PMID:23688400   PMID:23928401   PMID:23962454  
PMID:24040030   PMID:24253218   PMID:24793170   PMID:24831094   PMID:24875360   PMID:24927580   PMID:25338003   PMID:25512113   PMID:25595097   PMID:25662615   PMID:25961502   PMID:26147095  
PMID:26398943   PMID:26439735   PMID:26487692   PMID:26511927   PMID:26598603   PMID:26876687   PMID:26902588   PMID:26968211   PMID:26984772   PMID:27109481   PMID:27185876   PMID:27412481  
PMID:27453055   PMID:27624101   PMID:27679530   PMID:27867035   PMID:28102311   PMID:28408205   PMID:28548876   PMID:28713961   PMID:28822960   PMID:28827394   PMID:28851734   PMID:28877764  
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Plin2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39486,545,147 - 86,588,518 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl486,566,623 - 86,588,297 (-)EnsemblGRCm39 Ensembl
GRCm38486,626,910 - 86,670,217 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl486,648,386 - 86,670,060 (-)EnsemblGRCm38mm10GRCm38
MGSCv37486,302,469 - 86,315,963 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36486,127,797 - 86,141,225 (-)NCBIMGSCv36mm8
Celera485,171,641 - 85,185,400 (-)NCBICelera
Cytogenetic Map4C4NCBI
cM Map440.69NCBI
PLIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38919,108,388 - 19,127,492 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl919,108,375 - 19,149,290 (-)EnsemblGRCh38hg38GRCh38
GRCh37919,115,759 - 19,127,490 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36919,105,759 - 19,117,573 (-)NCBINCBI36Build 36hg18NCBI36
Build 34919,105,759 - 19,117,573NCBI
Celera919,041,952 - 19,053,704 (-)NCBICelera
Cytogenetic Map9p22.1NCBI
HuRef919,077,611 - 19,089,275 (-)NCBIHuRef
CHM1_1919,115,770 - 19,127,537 (-)NCBICHM1_1
T2T-CHM13v2.0919,128,612 - 19,140,276 (-)NCBIT2T-CHM13v2.0
Plin2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85106,202,634 - 106,258,748 (-)NCBIGRCr8
mRatBN7.25101,156,648 - 101,211,738 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5101,154,411 - 101,242,319 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5103,538,038 - 103,564,407 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05105,328,590 - 105,354,959 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05105,361,730 - 105,388,111 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05104,984,413 - 105,010,863 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5104,984,414 - 105,010,857 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05108,972,976 - 108,999,210 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45105,718,496 - 105,732,817 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15105,723,721 - 105,738,043 (-)NCBI
Celera599,654,064 - 99,667,851 (-)NCBICelera
Cytogenetic Map5q32NCBI
Plin2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543421,574,292 - 21,580,988 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543421,573,860 - 21,580,990 (-)NCBIChiLan1.0ChiLan1.0
PLIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211105,309,502 - 105,428,196 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19105,315,440 - 105,434,133 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0918,928,455 - 18,951,132 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1919,421,928 - 19,537,676 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl919,421,928 - 19,462,222 (-)Ensemblpanpan1.1panPan2
PLIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11138,940,063 - 38,959,126 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1138,940,065 - 38,959,070 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1137,598,800 - 37,617,859 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01139,873,157 - 39,892,049 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1139,873,157 - 39,891,976 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11138,566,314 - 38,585,390 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01138,361,251 - 38,380,316 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01138,998,438 - 39,017,321 (-)NCBIUU_Cfam_GSD_1.0
Plin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947153,369,919 - 153,390,479 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366521,039,259 - 1,060,122 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366521,039,248 - 1,059,983 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1203,683,862 - 203,709,273 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11203,683,867 - 203,709,277 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21227,334,036 - 227,357,123 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103219401
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11260,526,394 - 60,606,262 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1260,590,222 - 60,610,727 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236665992,224 - 20,825 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plin2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473623,111,265 - 23,122,193 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473623,114,149 - 23,122,634 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Plin2
2497 total Variants

Predicted Target Of
Summary Value
Count of predictions:848
Count of miRNA genes:460
Interacting mature miRNAs:515
Transcripts:ENSMUST00000000466, ENSMUST00000134094, ENSMUST00000134437, ENSMUST00000138605, ENSMUST00000140382, ENSMUST00000147097, ENSMUST00000149700, ENSMUST00000154999
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
10412176Habiir3_mhyperoxic acute lung injury imprinted region 3 (mouse)Not determined48375713094293740Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse

1 to 10 of 74 rows
RH124572  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38486,656,720 - 86,656,920UniSTSGRCm38
GRCm38486,626,870 - 86,627,065UniSTSGRCm38
MGSCv37486,302,624 - 86,302,824UniSTSGRCm37
MGSCv37486,272,774 - 86,272,969UniSTSGRCm37
Celera485,141,493 - 85,141,688UniSTS
Celera485,171,796 - 85,171,996UniSTS
Cytogenetic Map4C4UniSTS
cM Map438.9UniSTS
Adfp  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38486,656,536 - 86,656,660UniSTSGRCm38
MGSCv37486,302,440 - 86,302,564UniSTSGRCm37
Celera485,171,612 - 85,171,736UniSTS
Cytogenetic Map4C4UniSTS
cM Map438.9UniSTS
Adfp-rs  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38486,668,502 - 86,668,671UniSTSGRCm38
MGSCv37486,314,406 - 86,314,575UniSTSGRCm37
Celera485,183,843 - 85,184,012UniSTS
Cytogenetic Map4C4UniSTS
cM Map433.7UniSTS






1 to 30 of 42 rows
RefSeq Transcripts NM_001403711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK002911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 42 rows

Ensembl Acc Id: ENSMUST00000000466   ⟹   ENSMUSP00000000466
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl486,574,802 - 86,588,297 (-)Ensembl
GRCm38.p6 Ensembl486,656,565 - 86,670,060 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134094
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl486,585,902 - 86,588,223 (-)Ensembl
GRCm38.p6 Ensembl486,667,665 - 86,669,986 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl486,575,393 - 86,577,385 (-)Ensembl
GRCm38.p6 Ensembl486,657,156 - 86,659,148 (-)Ensembl
Ensembl Acc Id: ENSMUST00000138605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl486,575,144 - 86,576,881 (-)Ensembl
GRCm38.p6 Ensembl486,656,907 - 86,658,644 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140382   ⟹   ENSMUSP00000123456
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl486,580,171 - 86,588,005 (-)Ensembl
GRCm38.p6 Ensembl486,661,934 - 86,669,768 (-)Ensembl
Ensembl Acc Id: ENSMUST00000147097   ⟹   ENSMUSP00000119063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl486,578,358 - 86,583,962 (-)Ensembl
GRCm38.p6 Ensembl486,660,121 - 86,665,725 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149700   ⟹   ENSMUSP00000123333
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl486,580,171 - 86,587,797 (-)Ensembl
GRCm38.p6 Ensembl486,661,934 - 86,669,560 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154999
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl486,566,623 - 86,576,920 (-)Ensembl
GRCm38.p6 Ensembl486,648,386 - 86,658,683 (-)Ensembl
RefSeq Acc Id: NM_001403711   ⟹   NP_001390640
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,574,942 - 86,588,231 (-)NCBI
RefSeq Acc Id: NM_001403712   ⟹   NP_001390641
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,574,942 - 86,588,231 (-)NCBI
RefSeq Acc Id: NM_001403713   ⟹   NP_001390642
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,574,942 - 86,587,739 (-)NCBI
RefSeq Acc Id: NM_001403714   ⟹   NP_001390643
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,574,942 - 86,587,739 (-)NCBI
RefSeq Acc Id: NM_001403715   ⟹   NP_001390644
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,574,942 - 86,587,739 (-)NCBI
RefSeq Acc Id: NM_001403716   ⟹   NP_001390645
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,565,917 - 86,588,231 (-)NCBI
RefSeq Acc Id: NM_001403717   ⟹   NP_001390646
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,565,917 - 86,588,231 (-)NCBI
RefSeq Acc Id: NM_001403718   ⟹   NP_001390647
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,565,917 - 86,588,231 (-)NCBI
RefSeq Acc Id: NM_001403719   ⟹   NP_001390648
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,565,917 - 86,587,739 (-)NCBI
RefSeq Acc Id: NM_001403720   ⟹   NP_001390649
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,565,917 - 86,587,739 (-)NCBI
RefSeq Acc Id: NM_001403721   ⟹   NP_001390650
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,574,942 - 86,588,231 (-)NCBI
RefSeq Acc Id: NM_001403722   ⟹   NP_001390651
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,574,942 - 86,587,739 (-)NCBI
RefSeq Acc Id: NM_007408   ⟹   NP_031434
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,574,942 - 86,588,231 (-)NCBI
GRCm38486,656,565 - 86,670,059 (-)NCBI
MGSCv37486,302,469 - 86,315,963 (-)RGD
Celera485,171,641 - 85,185,400 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011249907   ⟹   XP_011248209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39486,545,147 - 86,588,518 (-)NCBI
GRCm38486,626,910 - 86,670,217 (-)NCBI
Sequence:
1 to 30 of 37 rows
Protein RefSeqs NP_001390640 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390641 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390642 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390643 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390644 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390645 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390646 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390647 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390648 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390649 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390650 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390651 (Get FASTA)   NCBI Sequence Viewer  
  NP_031434 (Get FASTA)   NCBI Sequence Viewer  
  XP_011248209 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA37176 (Get FASTA)   NCBI Sequence Viewer  
  AAH54766 (Get FASTA)   NCBI Sequence Viewer  
  AAK63075 (Get FASTA)   NCBI Sequence Viewer  
  AAK63076 (Get FASTA)   NCBI Sequence Viewer  
  BAB27332 (Get FASTA)   NCBI Sequence Viewer  
  BAC37483 (Get FASTA)   NCBI Sequence Viewer  
  BAE29361 (Get FASTA)   NCBI Sequence Viewer  
  BAE30931 (Get FASTA)   NCBI Sequence Viewer  
  BAE31081 (Get FASTA)   NCBI Sequence Viewer  
  BAE31562 (Get FASTA)   NCBI Sequence Viewer  
  BAE31815 (Get FASTA)   NCBI Sequence Viewer  
  BAE32690 (Get FASTA)   NCBI Sequence Viewer  
  BAE39285 (Get FASTA)   NCBI Sequence Viewer  
  EDL30998 (Get FASTA)   NCBI Sequence Viewer  
  EDL30999 (Get FASTA)   NCBI Sequence Viewer  
  EDL31000 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 37 rows
1 to 5 of 18 rows
1 to 5 of 18 rows
RefSeq Acc Id: NP_031434   ⟸   NM_007408
- Peptide Label: isoform 1
- UniProtKB: Q8K3Q8 (UniProtKB/Swiss-Prot),   P43883 (UniProtKB/Swiss-Prot),   Q3U711 (UniProtKB/TrEMBL),   Q541S0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011248209   ⟸   XM_011249907
- Peptide Label: isoform X2
- UniProtKB: Q3U711 (UniProtKB/TrEMBL),   Q541S0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000119063   ⟸   ENSMUST00000147097
Ensembl Acc Id: ENSMUSP00000000466   ⟸   ENSMUST00000000466
Ensembl Acc Id: ENSMUSP00000123333   ⟸   ENSMUST00000149700

Name Modeler Protein Id AA Range Protein Structure
AF-P43883-F1-model_v2 AlphaFold P43883 1-425 view protein structure

RGD ID:6834780
Promoter ID:MM_KWN:38275
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver,   MEF_B6
Transcripts:OTTMUST00000017242,   OTTMUST00000017243,   OTTMUST00000017648
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36486,304,491 - 86,305,872 (-)MPROMDB
RGD ID:6834782
Promoter ID:MM_KWN:38276
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000051107
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36486,311,351 - 86,312,507 (-)MPROMDB
RGD ID:6834781
Promoter ID:MM_KWN:38277
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000017238,   OTTMUST00000017239,   OTTMUST00000017240,   OTTMUST00000017241
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36486,315,381 - 86,316,922 (-)MPROMDB
RGD ID:6883770
Promoter ID:EPDNEW_M5336
Type:initiation region
Name:Plin2_2
Description:Mus musculus perilipin 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5337  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38486,669,500 - 86,669,560EPDNEW
RGD ID:6883772
Promoter ID:EPDNEW_M5337
Type:initiation region
Name:Plin2_1
Description:Mus musculus perilipin 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5336  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38486,669,994 - 86,670,054EPDNEW


1 to 24 of 24 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000028494 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000000466 ENTREZGENE
  ENSMUST00000000466.13 UniProtKB/Swiss-Prot
Gene3D-CATH Flagellar protein FliS UniProtKB/Swiss-Prot
  Perilipin, alpha-beta domain UniProtKB/Swiss-Prot
InterPro Perilipin UniProtKB/Swiss-Prot
KEGG Report mmu:11520 UniProtKB/Swiss-Prot
MGD MGI:87920 ENTREZGENE
NCBI Gene 11520 ENTREZGENE
PANTHER PERILIPIN UniProtKB/Swiss-Prot
  PERILIPIN-2 UniProtKB/Swiss-Prot
Pfam Perilipin UniProtKB/Swiss-Prot
PhenoGen Plin2 PhenoGen
PIRSF PAT UniProtKB/Swiss-Prot
Superfamily-SCOP Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain UniProtKB/Swiss-Prot
UniProt B1AXR3_MOUSE UniProtKB/TrEMBL
  B1AXR5_MOUSE UniProtKB/TrEMBL
  P43883 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3U711 ENTREZGENE, UniProtKB/TrEMBL
  Q541S0 ENTREZGENE, UniProtKB/TrEMBL
  Q8C5B5_MOUSE UniProtKB/TrEMBL
  Q8K3Q8 ENTREZGENE
  Q9CY19_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8K3Q8 UniProtKB/Swiss-Prot
1 to 24 of 24 rows