Eef1a1 (eukaryotic translation elongation factor 1 alpha 1) - Rat Genome Database

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Gene: Eef1a1 (eukaryotic translation elongation factor 1 alpha 1) Rattus norvegicus
Analyze
Symbol: Eef1a1
Name: eukaryotic translation elongation factor 1 alpha 1
RGD ID: 67387
Description: Enables heterocyclic compound binding activity; identical protein binding activity; and mRNA binding activity. Involved in several processes, including cellular response to nerve growth factor stimulus; negative regulation of reactive oxygen species biosynthetic process; and regulation of postsynaptic specialization assembly. Is active in GABA-ergic synapse and postsynapse. Orthologous to human EEF1A1 (eukaryotic translation elongation factor 1 alpha 1); PARTICIPATES IN chaperone mediated autophagy pathway; translation elongation pathway; RNA transport pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ALPHA; EEF-1; EEF1A; eEF1A-1; Eef1a2; Eef1a2l1; EF-1 alpha2; EF-1-alpha-1; EF-Tu; EF1A; elongation factor 1 A-1; elongation factor 1-alpha 1; elongation factor Tu; eukaryotic elongation factor 1 A-1; eukaryotic translation elongation factor 1 alpha 2 like 1; LOC293924; MGC125172; SI
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8888,221,839 - 88,225,688 (-)NCBIGRCr8
mRatBN7.2879,341,554 - 79,344,784 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl879,341,557 - 79,344,839 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx884,871,430 - 84,874,652 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0883,148,575 - 83,151,797 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0880,971,265 - 80,974,487 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0885,838,594 - 85,841,816 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl885,838,869 - 85,840,818 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0885,385,250 - 85,391,583 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4883,463,591 - 83,466,813 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1883,482,914 - 83,484,874 (-)NCBI
Celera879,087,667 - 79,090,889 (-)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(Z)-3-butylidenephthalide  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (EXP,ISO)
abiraterone  (ISO)
acetamide  (EXP)
acetic acid  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (EXP)
alpha-pinene  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bleomycin A2  (ISO)
bromochloroacetic acid  (ISO)
bucladesine  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dihydroartemisinin  (ISO)
dimethylarsinic acid  (EXP)
dioxygen  (EXP)
diuron  (EXP,ISO)
dopamine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
ethanol  (EXP,ISO)
fenbuconazole  (ISO)
ferric oxide  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gamendazole  (EXP)
gamma-hexachlorocyclohexane  (EXP)
genistein  (EXP)
gentamycin  (EXP)
glucose  (EXP)
glyphosate  (ISO)
graphite  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lithium atom  (EXP)
lithium hydride  (EXP)
maneb  (ISO)
medroxyprogesterone acetate  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosomorpholine  (EXP)
nitric oxide  (ISO)
ochratoxin A  (EXP)
ozone  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (EXP)
perfluorodecanoic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenanthrene  (ISO)
PhIP  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
plitidepsin  (ISO)
potassium chromate  (ISO)
propiconazole  (EXP)
prostaglandin A1  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
SWINHOLIDE A  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
tetrachloroethene  (ISO)
tetrahydropalmatine  (ISO)
thapsigargin  (EXP)
titanium dioxide  (ISO)
triadimefon  (ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
triphenylstannane  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The mechanics of ribosomal translocation. Achenbach J and Nierhaus KH, Biochimie. 2014 Dec 13. pii: S0300-9084(14)00376-9. doi: 10.1016/j.biochi.2014.12.003.
2. Isolation and characterization of the rat chromosomal gene for a polypeptide (pS1) antigenically related to statin. Ann DK, etal., J Biol Chem 1991 Jun 5;266(16):10429-37.
3. Characterization of the statin-like S1 and rat elongation factor 1 alpha as two distinctly expressed messages in rat. Ann DK, etal., J Biol Chem 1992 Jan 15;267(2):699-702.
4. Effects of two elongation factor 1A isoforms on the formation of gephyrin clusters at inhibitory synapses in hippocampal neurons. Becker M, etal., Histochem Cell Biol. 2013 Dec;140(6):603-9. doi: 10.1007/s00418-013-1122-9. Epub 2013 Jul 10.
5. A critical role for eukaryotic elongation factor 1A-1 in lipotoxic cell death. Borradaile NM, etal., Mol Biol Cell. 2006 Feb;17(2):770-8. Epub 2005 Nov 30.
6. Effects of long-term denervation on skeletal muscle in old rats. Carlson BM, etal., J Gerontol A Biol Sci Med Sci. 2002 Oct;57(10):B366-74.
7. Presence of translation elongation factor-1A (eEF1A) in the excitatory postsynaptic density of rat cerebral cortex. Cho SJ, etal., Neurosci Lett. 2004 Aug 5;366(1):29-33. doi: 10.1016/j.neulet.2004.05.036.
8. Chaperone-mediated autophagy: roles in disease and aging. Cuervo AM and Wong E, Cell Res. 2014 Jan;24(1):92-104. doi: 10.1038/cr.2013.153. Epub 2013 Nov 26.
9. Fine mapping of interactions between eEF1alpha protein and 3'UTR of metallothionein-1 mRNA. Fan K, etal., Biochem Biophys Res Commun. 2009 Aug 14;386(1):82-8. doi: 10.1016/j.bbrc.2009.05.146. Epub 2009 Jun 6.
10. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
11. Neurite outgrowth mediated by translation elongation factor eEF1A1: a target for antiplatelet agent cilostazol. Hashimoto K and Ishima T, PLoS One. 2011 Mar 1;6(3):e17431. doi: 10.1371/journal.pone.0017431.
12. Cloning of human and mouse brain cDNAs coding for S1, the second member of the mammalian elongation factor-1 alpha gene family: analysis of a possible evolutionary pathway. Lee S, etal., Biochem Biophys Res Commun 1994 Sep 30;203(3):1371-7.
13. Novel interaction between the M4 muscarinic acetylcholine receptor and elongation factor 1A2. McClatchy DB, etal., J Biol Chem 2002 Aug 9;277(32):29268-74.
14. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
15. Proteomic analysis of rat cartilage: the identification of differentially expressed proteins in the early stages of osteoarthritis. Parra-Torres NM, etal., Proteome Sci. 2014 Nov 18;12(1):55. doi: 10.1186/s12953-014-0055-0. eCollection 2014.
16. Nerve growth factor specifically stimulates translation of eukaryotic elongation factor 1A-1 (eEF1A-1) mRNA by recruitment to polyribosomes in PC12 cells. Petroulakis E and Wang E, J Biol Chem 2002 May 24;277(21):18718-27. Epub 2002 Mar 20.
17. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
18. An integrated rat genetic map: analysis of linkage conservation with the mouse and human maps. Remmers EF, etal., Transplant Proc 1999 May;31(3):1549-54.
19. GOA pipeline RGD automated data pipeline
20. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
21. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
22. Proteomics profiling of nuclear proteins for kidney fibroblasts suggests hypoxia, meiosis, and cancer may meet in the nucleus. Shakib K, etal., Proteomics. 2005 Jul;5(11):2819-38.
23. Nucleotide sequence of rat elongation factor-1 alpha cDNA. Shirasawa T, etal., Nucleic Acids Res 1992 Feb 25;20(4):909.
24. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
25. Rat elongation factor 1 alpha: sequence of cDNA from a highly metastatic fos-transferred cell line. Taniguchi S, etal., Nucleic Acids Res 1991 Dec 25;19(24):6949.
26. Gamendazole, an orally active indazole carboxylic acid male contraceptive agent, targets HSP90AB1 (HSP90BETA) and EEF1A1 (eEF1A), and stimulates Il1a transcription in rat Sertoli cells. Tash JS, etal., Biol Reprod. 2008 Jun;78(6):1139-52. doi: 10.1095/biolreprod.107.062679. Epub 2008 Jan 23.
27. Structural basis of the translational elongation cycle. Voorhees RM and Ramakrishnan V, Annu Rev Biochem. 2013;82:203-36. doi: 10.1146/annurev-biochem-113009-092313.
28. Chronic ethanol feeding causes depression of mitochondrial elongation factor Tu in the rat liver: implications for the mitochondrial ribosome. Weiser B, etal., Am J Physiol Gastrointest Liver Physiol. 2011 May;300(5):G815-22. doi: 10.1152/ajpgi.00108.2010. Epub 2011 Feb 24.
29. Chaperone mediated autophagy to the rescue: A new-fangled target for the treatment of neurodegenerative diseases. Xilouri M and Stefanis L, Mol Cell Neurosci. 2015 May;66(Pt A):29-36. doi: 10.1016/j.mcn.2015.01.003. Epub 2015 Feb 25.
30. Identification of mitochondria translation elongation factor Tu as a contributor to oxidative damage of postburn myocardium. Zhang DX, etal., J Proteomics. 2012 Dec 21;77:469-79. doi: 10.1016/j.jprot.2012.09.024. Epub 2012 Oct 2.
Additional References at PubMed
PMID:8743958   PMID:9852145   PMID:12193549   PMID:12426392   PMID:12519789   PMID:12646217   PMID:15013623   PMID:15147779   PMID:15489334   PMID:15958750   PMID:16723660   PMID:16854843  
PMID:17177976   PMID:17595531   PMID:17634366   PMID:17965018   PMID:17980171   PMID:18263879   PMID:18720057   PMID:19056867   PMID:19158340   PMID:19182904   PMID:19199708   PMID:19856081  
PMID:19946888   PMID:20458337   PMID:20817065   PMID:21630459   PMID:21689717   PMID:22082260   PMID:22658674   PMID:22681889   PMID:22871113   PMID:23376485   PMID:23580065   PMID:24209753  
PMID:24625528   PMID:26497934   PMID:28259758   PMID:29476059   PMID:30361391   PMID:31904090   PMID:35352799  


Genomics

Comparative Map Data
Eef1a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8888,221,839 - 88,225,688 (-)NCBIGRCr8
mRatBN7.2879,341,554 - 79,344,784 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl879,341,557 - 79,344,839 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx884,871,430 - 84,874,652 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0883,148,575 - 83,151,797 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0880,971,265 - 80,974,487 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0885,838,594 - 85,841,816 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl885,838,869 - 85,840,818 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0885,385,250 - 85,391,583 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4883,463,591 - 83,466,813 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1883,482,914 - 83,484,874 (-)NCBI
Celera879,087,667 - 79,090,889 (-)NCBICelera
Cytogenetic Map8q31NCBI
EEF1A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38673,515,750 - 73,521,032 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl673,489,308 - 73,525,587 (-)EnsemblGRCh38hg38GRCh38
GRCh37674,225,473 - 74,230,755 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36674,282,194 - 74,287,476 (-)NCBINCBI36Build 36hg18NCBI36
Build 34674,283,961 - 74,287,475NCBI
Celera674,620,376 - 74,625,658 (-)NCBICelera
Cytogenetic Map6q13NCBI
HuRef671,425,023 - 71,430,305 (-)NCBIHuRef
CHM1_1674,392,278 - 74,397,560 (-)NCBICHM1_1
T2T-CHM13v2.0674,692,854 - 74,698,136 (-)NCBIT2T-CHM13v2.0
Eef1a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39978,385,735 - 78,389,006 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl978,385,731 - 78,396,433 (-)EnsemblGRCm39 Ensembl
GRCm38978,478,453 - 78,481,724 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl978,478,449 - 78,489,151 (-)EnsemblGRCm38mm10GRCm38
MGSCv37978,326,260 - 78,329,531 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36978,264,142 - 78,267,384 (-)NCBIMGSCv36mm8
Celera975,657,008 - 75,660,279 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.65NCBI
Eef1a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554938,661,317 - 8,663,190 (-)NCBIChiLan1.0ChiLan1.0
EEF1A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2593,493,424 - 93,499,530 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1691,420,938 - 91,425,264 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0671,342,291 - 71,346,033 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1674,629,688 - 74,634,018 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl674,629,688 - 74,633,754 (-)Ensemblpanpan1.1panPan2
EEF1A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11235,576,576 - 35,581,339 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1235,576,576 - 35,581,230 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1235,447,823 - 35,452,483 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01236,133,628 - 36,138,630 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1236,133,628 - 36,138,280 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11235,673,037 - 35,677,696 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01235,694,460 - 35,699,119 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01235,818,720 - 35,823,375 (-)NCBIUU_Cfam_GSD_1.0
Eef1a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494670,865,967 - 70,869,609 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936859740,615 - 744,262 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936859740,620 - 744,534 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EEF1A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl192,421,230 - 92,425,044 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1192,421,235 - 92,425,053 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21103,474,147 - 103,477,893 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EEF1A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1171,626,701 - 1,630,445 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl171,627,901 - 1,630,150 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660587,530,746 - 7,535,955 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eef1a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624819732,268 - 735,313 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624819732,118 - 735,391 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Eef1a1
19 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:94
Count of miRNA genes:80
Interacting mature miRNAs:83
Transcripts:ENSRNOT00000013608
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)87531177784531599Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)85423764485365202Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85009524982460899Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)85423764485365202Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)87531193882925521Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85009524982460899Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 3 28 51 36 19 36 64 31 37 11
Medium 15 6 5 5 8 11 10 4 4 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_175838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC097023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC063162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC091297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC111707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC128723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L10339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M81088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X61043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X63561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000013608   ⟹   ENSRNOP00000013608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl879,341,558 - 79,344,787 (-)Ensembl
Rnor_6.0 Ensembl885,838,869 - 85,840,818 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112753   ⟹   ENSRNOP00000090613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl879,341,557 - 79,344,839 (-)Ensembl
RefSeq Acc Id: NM_175838   ⟹   NP_787032
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8888,221,847 - 88,225,069 (-)NCBI
mRatBN7.2879,341,562 - 79,344,784 (-)NCBI
Rnor_6.0885,838,594 - 85,841,816 (-)NCBI
Rnor_5.0885,385,250 - 85,391,583 (-)NCBI
RGSC_v3.4883,463,591 - 83,466,813 (-)RGD
Celera879,087,667 - 79,090,889 (-)RGD
Sequence:
RefSeq Acc Id: XM_039080748   ⟹   XP_038936676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8888,221,839 - 88,225,065 (-)NCBI
mRatBN7.2879,341,554 - 79,344,715 (-)NCBI
RefSeq Acc Id: XM_039080749   ⟹   XP_038936677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8888,221,839 - 88,225,065 (-)NCBI
mRatBN7.2879,341,554 - 79,344,126 (-)NCBI
RefSeq Acc Id: XM_063264828   ⟹   XP_063120898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8888,221,839 - 88,225,688 (-)NCBI
RefSeq Acc Id: XM_063264829   ⟹   XP_063120899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8888,221,839 - 88,225,065 (-)NCBI
RefSeq Acc Id: NP_787032   ⟸   NM_175838
- UniProtKB: Q64718 (UniProtKB/Swiss-Prot),   Q5BJW8 (UniProtKB/Swiss-Prot),   Q78ED4 (UniProtKB/Swiss-Prot),   P62630 (UniProtKB/Swiss-Prot),   A6I1K3 (UniProtKB/TrEMBL),   A0A8L2Q996 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000013608   ⟸   ENSRNOT00000013608
RefSeq Acc Id: XP_038936676   ⟸   XM_039080748
- Peptide Label: isoform X1
- UniProtKB: Q64718 (UniProtKB/Swiss-Prot),   Q5BJW8 (UniProtKB/Swiss-Prot),   P62630 (UniProtKB/Swiss-Prot),   Q78ED4 (UniProtKB/Swiss-Prot),   A6I1K3 (UniProtKB/TrEMBL),   A0A8L2Q996 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936677   ⟸   XM_039080749
- Peptide Label: isoform X1
- UniProtKB: Q64718 (UniProtKB/Swiss-Prot),   Q5BJW8 (UniProtKB/Swiss-Prot),   P62630 (UniProtKB/Swiss-Prot),   Q78ED4 (UniProtKB/Swiss-Prot),   A6I1K3 (UniProtKB/TrEMBL),   A0A8L2Q996 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000090613   ⟸   ENSRNOT00000112753
RefSeq Acc Id: XP_063120898   ⟸   XM_063264828
- Peptide Label: isoform X1
- UniProtKB: Q78ED4 (UniProtKB/Swiss-Prot),   Q64718 (UniProtKB/Swiss-Prot),   Q5BJW8 (UniProtKB/Swiss-Prot),   P62630 (UniProtKB/Swiss-Prot),   A0A8L2Q996 (UniProtKB/TrEMBL),   A6I1K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120899   ⟸   XM_063264829
- Peptide Label: isoform X1
- UniProtKB: Q78ED4 (UniProtKB/Swiss-Prot),   Q64718 (UniProtKB/Swiss-Prot),   Q5BJW8 (UniProtKB/Swiss-Prot),   P62630 (UniProtKB/Swiss-Prot),   A0A8L2Q996 (UniProtKB/TrEMBL),   A6I1K3 (UniProtKB/TrEMBL)
Protein Domains
tr-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62630-F1-model_v2 AlphaFold P62630 1-462 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:67387 AgrOrtholog
BioCyc Gene G2FUF-29755 BioCyc
Ensembl Genes ENSRNOG00000009439 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000011624 UniProtKB/TrEMBL
  ENSRNOG00055004783 UniProtKB/Swiss-Prot
  ENSRNOG00060021266 UniProtKB/Swiss-Prot
  ENSRNOG00065017068 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013608 ENTREZGENE
  ENSRNOT00000013608.7 UniProtKB/Swiss-Prot
  ENSRNOT00000016947.5 UniProtKB/TrEMBL
  ENSRNOT00000112753.1 UniProtKB/TrEMBL
  ENSRNOT00055007614 UniProtKB/Swiss-Prot
  ENSRNOT00060036814 UniProtKB/Swiss-Prot
  ENSRNOT00065028498 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Translation factors UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6918979 IMAGE-MGC_LOAD
  IMAGE:7103726 IMAGE-MGC_LOAD
  IMAGE:7309009 IMAGE-MGC_LOAD
  IMAGE:7312569 IMAGE-MGC_LOAD
  IMAGE:7367097 IMAGE-MGC_LOAD
InterPro EFTu-like_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_TR_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T_Tr_GTP-bd_dom UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  Transl_B-barrel_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transl_elong_EF1A/Init_IF2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transl_elong_EF1A_euk/arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transl_elong_EFTu/EF1A_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:171361 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:109226 IMAGE-MGC_LOAD
  MGC:125172 IMAGE-MGC_LOAD
  MGC:156575 IMAGE-MGC_LOAD
  MGC:72753 IMAGE-MGC_LOAD
  MGC:91600 IMAGE-MGC_LOAD
NCBI Gene 171361 ENTREZGENE
PANTHER ELONGATION FACTOR 1-ALPHA 1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ELONGATION FACTOR 1-ALPHA 2 UniProtKB/TrEMBL
  TRANSLATION FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GTP_EFTU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GTP_EFTU_D2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GTP_EFTU_D3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Eef1a1 PhenoGen
PRINTS ELONGATNFCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_TR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_TR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009439 RatGTEx
  ENSRNOG00000011624 RatGTEx
  ENSRNOG00055004783 RatGTEx
  ENSRNOG00060021266 RatGTEx
  ENSRNOG00065017068 RatGTEx
Superfamily-SCOP SSF50447 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50465 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AEM9_RAT UniProtKB/TrEMBL
  A0A8L2Q996 ENTREZGENE, UniProtKB/TrEMBL
  A6I1K3 ENTREZGENE, UniProtKB/TrEMBL
  EF1A1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5BJW8 ENTREZGENE
  Q64718 ENTREZGENE
  Q78ED4 ENTREZGENE
UniProt Secondary P20001 UniProtKB/Swiss-Prot
  Q5BJW8 UniProtKB/Swiss-Prot
  Q64718 UniProtKB/Swiss-Prot
  Q78ED4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-01-12 Eef1a1  eukaryotic translation elongation factor 1 alpha 1  Eef1a2l1  eukaryotic translation elongation factor 1 alpha 2 like 1  Data merged from RGD:2537 737654 APPROVED
2005-11-17 Eef1a2l1  eukaryotic translation elongation factor 1 alpha 2 like 1      Symbol and Name updated 1299863 APPROVED
2005-02-23 Eef1a1  eukaryotic translation elongation factor 1 alpha 1  Eef1a1_predicted  eukaryotic translation elongation factor 1 alpha 1 (predicted)  Data merged from RGD:1307320 737654 APPROVED
2005-01-12 Eef1a1_predicted  eukaryotic translation elongation factor 1 alpha 1 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL
2003-04-09 Eef1a1  eukaryotic translation elongation factor 1 alpha 1    eukaryotic translation elongation factor 1 alpha 2  Name updated 629478 APPROVED
2002-06-10 Eef1a1  eukaryotic translation elongation factor 1 alpha 2      Symbol and Name status set to approved 70586 APPROVED
2002-06-10 Eef1a2  eukaryotic translation elongation factor 1 alpha 2       Name updated 70584 APPROVED
2001-10-22 Eef1a1  eukaryotic translation elongation factor 1 alpha 2      Name updated 68916 RESERVED

RGD Curation Notes
Note Type Note Reference
gene_function tethers aminoacyl-tRNA to the ribosome during peptide synthesis 69829
gene_process promotes GTP-dependent binding of aminoacyl-tRNA to the a-site of ribosomes during protein biosynthesis