Tsg101 (tumor susceptibility 101) - Rat Genome Database

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Gene: Tsg101 (tumor susceptibility 101) Rattus rattus
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Symbol: Tsg101
Name: tumor susceptibility 101
RGD ID: 626003173
Description: ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); protein homodimerization activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell differentiation (ortholog); endosome to lysosome transport (ortholog); exosomal secretion (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH breast cancer (ortholog); breast carcinoma (ortholog); cervix carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); early endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor susceptibility gene 101 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Rrattus_CSIRO_v1 - Rrattus_CSIRO_v1 Assembly
Position:
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12152,457,588 - 152,486,918 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tsg101
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12152,457,588 - 152,486,918 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1
TSG101
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381118,480,311 - 18,526,942 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1118,468,336 - 18,526,965 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371118,501,858 - 18,548,489 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361118,458,434 - 18,505,065 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341118,458,435 - 18,505,065NCBI
Celera1118,637,463 - 18,684,120 (-)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1118,187,557 - 18,234,372 (-)NCBIHuRef
CHM1_11118,501,223 - 18,547,842 (-)NCBICHM1_1
T2T-CHM13v2.01118,578,331 - 18,624,993 (-)NCBIT2T-CHM13v2.0
Tsg101
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39746,538,693 - 46,569,716 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl746,528,034 - 46,569,863 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38746,888,949 - 46,926,320 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl746,888,949 - 46,919,969 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37754,144,397 - 54,175,300 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36746,757,396 - 46,787,915 (-)NCBIMGSCv36mm8
Celera742,369,255 - 42,400,171 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map730.62NCBI
Tsg101
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81106,549,035 - 106,578,859 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1106,535,021 - 106,578,775 (-)EnsemblGRCr8
mRatBN7.2197,412,689 - 97,442,589 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl197,410,848 - 97,442,554 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1102,805,766 - 102,835,099 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01111,277,750 - 111,307,082 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01104,561,098 - 104,590,847 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1105,188,587 - 105,218,349 (-)NCBI
Lyon_Normotensive1110,298,646 - 110,328,406 (-)NCBI
Lyon_Hypertensive1106,831,929 - 106,861,679 (-)NCBI
F344_StmMcwi1105,288,981 - 105,318,745 (-)NCBI
Rnor_6.01102,941,151 - 102,971,017 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1102,941,231 - 102,970,950 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01104,015,969 - 104,044,641 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4197,445,040 - 97,475,141 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera191,659,356 - 91,689,173 (-)NCBICelera
RGSC_v3.1197,523,152 - 97,553,252 (-)NCBI
Cytogenetic Map1q22NCBI
Tsg101
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541433,154,812 - 33,193,769 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495541433,154,812 - 33,193,769 (-)NCBIChiLan1.0ChiLan1.0
TSG101
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2920,797,111 - 20,843,855 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11120,757,432 - 20,804,234 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01118,518,110 - 18,564,814 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11118,201,381 - 18,248,149 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1118,189,868 - 18,248,149 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
TSG101
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12140,910,870 - 40,952,922 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2140,910,874 - 40,952,808 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2140,390,143 - 40,432,212 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02142,032,656 - 42,074,737 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2142,032,614 - 42,074,722 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12141,026,209 - 41,068,217 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02141,213,135 - 41,255,211 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02141,590,866 - 41,632,952 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC120889616
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap1444,440,161 - 44,560,393 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440494744,836,536 - 44,841,475 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936528752,694 - 808,888 (+)NCBISpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_004936528752,694 - 808,888 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936528752,572 - 809,127 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSG101
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1240,673,187 - 40,720,681 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2243,759,512 - 43,783,691 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSG101
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1146,258,896 - 46,316,768 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023666038143,746,335 - 143,804,463 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1146,401,889 - 46,451,122 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl146,402,024 - 46,450,916 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Tsg101
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247669,932,190 - 9,977,725 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247669,934,228 - 9,977,697 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl5106,354,671 - 106,431,081 (+)Ensembl


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_032893568   ⟹   XP_032749459
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v12152,457,589 - 152,486,918 (+)NCBI
RefSeq Acc Id: XM_032893569   ⟹   XP_032749460
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v12152,457,588 - 152,486,918 (+)NCBI
RefSeq Acc Id: XM_032893570   ⟹   XP_032749461
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v12152,466,870 - 152,486,918 (+)NCBI
Protein Sequences
Protein RefSeqs XP_032749459 (Get FASTA)   NCBI Sequence Viewer  
  XP_032749460 (Get FASTA)   NCBI Sequence Viewer  
  XP_032749461 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_032749460   ⟸   XM_032893569
- Peptide Label: isoform X2
RefSeq Acc Id: XP_032749459   ⟸   XM_032893568
- Peptide Label: isoform X1
RefSeq Acc Id: XP_032749461   ⟸   XM_032893570
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene Tsg101 ENTREZGENE