Tsg101 (tumor susceptibility gene 101) - Rat Genome Database

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Gene: Tsg101 (tumor susceptibility gene 101) Mus musculus
Analyze
Symbol: Tsg101
Name: tumor susceptibility gene 101
RGD ID: 1551168
MGI Page MGI
Description: Exhibits transcription corepressor activity. Involved in several processes, including exosomal secretion; keratinocyte differentiation; and positive regulation of ubiquitin-dependent endocytosis. Localizes to cytoplasm and extracellular exosome. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system gland; limb; and nervous system. Human ortholog(s) of this gene implicated in breast cancer; breast carcinoma; cervix carcinoma; endometrial adenocarcinoma; and prostate cancer. Orthologous to human TSG101 (tumor susceptibility 101); PARTICIPATES IN autophagy pathway; endocytosis pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17beta-hydroxy-5alpha-androstan-3-one; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI255943; CC2; ESCRT-I complex subunit TSG101; tumor susceptibility gene 101 protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18446   Tsg101-ps  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39746,538,697 - 46,569,717 (-)NCBIGRCm39mm39
GRCm39 Ensembl746,538,697 - 46,569,717 (-)Ensembl
GRCm38746,888,949 - 46,926,320 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl746,888,949 - 46,919,969 (-)EnsemblGRCm38mm10GRCm38
MGSCv37754,144,397 - 54,175,300 (-)NCBIGRCm37mm9NCBIm37
MGSCv36746,757,396 - 46,787,915 (-)NCBImm8
Celera742,369,255 - 42,400,171 (-)NCBICelera
Cytogenetic Map7B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7724523   PMID:8616888   PMID:9840940   PMID:10343110   PMID:10349636   PMID:10888872   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11134028   PMID:11172041   PMID:11916981  
PMID:11929781   PMID:11943869   PMID:12205095   PMID:12477932   PMID:12482969   PMID:12520002   PMID:12802020   PMID:14610273   PMID:14973438   PMID:15210712   PMID:15256501   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16280085   PMID:16602821   PMID:17274640   PMID:18799693   PMID:19210987   PMID:19703557   PMID:20059953   PMID:20211142   PMID:20399684  
PMID:20805499   PMID:21267068   PMID:21551061   PMID:21628571   PMID:21725061   PMID:22479596   PMID:22560297   PMID:22798426   PMID:22983114   PMID:23012657   PMID:23253940   PMID:23276921  
PMID:23548632   PMID:24205035   PMID:25183008   PMID:25392495   PMID:26115514   PMID:26496610   PMID:27406702   PMID:28190767   PMID:30782301   PMID:31286822   PMID:31619520   PMID:32325033  


Genomics

Comparative Map Data
Tsg101
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39746,538,697 - 46,569,717 (-)NCBIGRCm39mm39
GRCm39 Ensembl746,538,697 - 46,569,717 (-)Ensembl
GRCm38746,888,949 - 46,926,320 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl746,888,949 - 46,919,969 (-)EnsemblGRCm38mm10GRCm38
MGSCv37754,144,397 - 54,175,300 (-)NCBIGRCm37mm9NCBIm37
MGSCv36746,757,396 - 46,787,915 (-)NCBImm8
Celera742,369,255 - 42,400,171 (-)NCBICelera
Cytogenetic Map7B3NCBI
TSG101
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1118,468,336 - 18,526,951 (-)EnsemblGRCh38hg38GRCh38
GRCh381118,480,311 - 18,526,942 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371118,501,858 - 18,548,489 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361118,458,434 - 18,505,065 (-)NCBINCBI36hg18NCBI36
Build 341118,458,435 - 18,505,065NCBI
Celera1118,637,463 - 18,684,120 (-)NCBI
Cytogenetic Map11p15.1NCBI
HuRef1118,187,557 - 18,234,372 (-)NCBIHuRef
CHM1_11118,501,223 - 18,547,842 (-)NCBICHM1_1
Tsg101
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2197,412,689 - 97,442,589 (-)NCBI
Rnor_6.0 Ensembl1102,941,231 - 102,970,950 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01102,941,151 - 102,971,017 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01104,015,969 - 104,044,641 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4197,445,040 - 97,475,141 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1197,523,152 - 97,553,252 (-)NCBI
Celera191,659,356 - 91,689,173 (-)NCBICelera
Cytogenetic Map1q22NCBI
Tsg101
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541433,154,812 - 33,193,769 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541433,154,812 - 33,193,769 (-)NCBIChiLan1.0ChiLan1.0
TSG101
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11118,201,381 - 18,248,149 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1118,189,868 - 18,248,149 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01118,518,110 - 18,564,814 (-)NCBIMhudiblu_PPA_v0panPan3
TSG101
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12140,910,870 - 40,952,922 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2140,910,874 - 40,952,808 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2140,390,143 - 40,432,212 (-)NCBI
ROS_Cfam_1.02142,032,656 - 42,074,737 (-)NCBI
UMICH_Zoey_3.12141,026,209 - 41,068,217 (-)NCBI
UNSW_CanFamBas_1.02141,213,135 - 41,255,211 (-)NCBI
UU_Cfam_GSD_1.02141,590,866 - 41,632,952 (-)NCBI
LOC101970059
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494744,718,596 - 44,726,328 (+)NCBI
SpeTri2.0NW_004936528752,572 - 809,127 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSG101
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1240,673,187 - 40,720,681 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2243,759,512 - 43,783,691 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSG101
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1146,401,889 - 46,451,122 (+)NCBI
ChlSab1.1 Ensembl146,402,024 - 46,450,916 (+)Ensembl
Vero_WHO_p1.0NW_023666038143,746,335 - 143,804,463 (+)NCBI
Tsg101
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247669,932,190 - 9,977,725 (-)NCBI

Position Markers
AI255943  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38746,889,594 - 46,889,696UniSTSGRCm38
GRCm381562,981,736 - 62,981,838UniSTSGRCm38
MGSCv371562,813,291 - 62,813,393UniSTSGRCm37
MGSCv37754,144,964 - 54,145,066UniSTSGRCm37
Celera1564,477,300 - 64,477,402UniSTS
Celera742,369,822 - 42,369,924UniSTS
Cytogenetic Map15D1UniSTS
Cytogenetic Map7B5UniSTS
Whitehead/MRC_RH7586.72UniSTS
tsg101  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38746,889,453 - 46,889,615UniSTSGRCm38
GRCm381562,981,817 - 62,981,979UniSTSGRCm38
MGSCv371562,813,372 - 62,813,534UniSTSGRCm37
MGSCv37754,144,823 - 54,144,985UniSTSGRCm37
Celera1564,477,381 - 64,477,543UniSTS
Celera742,369,681 - 42,369,843UniSTS
Cytogenetic Map15D1UniSTS
Cytogenetic Map7B5UniSTS
cM Map7 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7346321287493512Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360000072900000Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1333306047333196Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71343577947435779Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71360000047700000Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71690336849509583Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718994869119886157Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719413473142366067Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71958059053580679Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined72014282554142942Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72302446357024609Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72323914857239292Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72341710757417107Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72719819161202351Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72789112561891125Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3033306081485905Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730500000109400000Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73206509766065329Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73274478466744933Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3379830258499217Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3379830258499217Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3379830258499217Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3379830258499217Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73379830258499217Mouse
1357731Lvrq6_mliver weight QTL 6 (mouse)Not determined73379830258499217Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73379830258499217Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73379830258499217Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73379830258499217Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73440327768403475Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73450000051500000Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73466713968667295Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73479812168798270Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73658059092745138Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736580590116817642Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73760000072400000Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73760000087400000Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73824163872241834Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73877180072771936Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined740024463103860803Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74149907275499217Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74149907275499217Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745512542119094307Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74560000079600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:505
Count of miRNA genes:353
Interacting mature miRNAs:425
Transcripts:ENSMUST00000014546, ENSMUST00000140693, ENSMUST00000143413, ENSMUST00000146130, ENSMUST00000156335
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001348088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC090123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF060868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY250758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB183613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U52945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X82319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000014546   ⟹   ENSMUSP00000014546
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl746,888,949 - 46,919,969 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140693
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl746,906,589 - 46,909,045 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143413   ⟹   ENSMUSP00000121314
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl746,907,051 - 46,919,937 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146130
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl746,889,027 - 46,891,027 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156335   ⟹   ENSMUSP00000120856
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl746,892,487 - 46,919,891 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209538   ⟹   ENSMUSP00000147748
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl746,889,586 - 46,909,006 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210664   ⟹   ENSMUSP00000147749
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl746,903,522 - 46,919,869 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211076   ⟹   ENSMUSP00000147701
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl746,892,497 - 46,919,944 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211595
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl746,901,025 - 46,914,410 (-)Ensembl
RefSeq Acc Id: NM_001348088   ⟹   NP_001335017
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,538,697 - 46,569,717 (-)NCBI
GRCm38746,888,949 - 46,919,969 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348089   ⟹   NP_001335018
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,538,697 - 46,569,717 (-)NCBI
GRCm38746,888,949 - 46,919,969 (-)NCBI
Sequence:
RefSeq Acc Id: NM_021884   ⟹   NP_068684
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,538,697 - 46,569,717 (-)NCBI
GRCm38746,888,949 - 46,919,969 (-)NCBI
MGSCv37754,144,397 - 54,175,300 (-)RGD
Celera742,369,255 - 42,400,171 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030242362   ⟹   XP_030098222
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,539,111 - 46,569,713 (-)NCBI
GRCm38746,889,363 - 46,919,976 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_068684   ⟸   NM_021884
- Peptide Label: isoform 1
- UniProtKB: Q61187 (UniProtKB/Swiss-Prot),   Q3UCW0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001335018   ⟸   NM_001348089
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001335017   ⟸   NM_001348088
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030098222   ⟸   XM_030242362
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000121314   ⟸   ENSMUST00000143413
RefSeq Acc Id: ENSMUSP00000147701   ⟸   ENSMUST00000211076
RefSeq Acc Id: ENSMUSP00000147749   ⟸   ENSMUST00000210664
RefSeq Acc Id: ENSMUSP00000014546   ⟸   ENSMUST00000014546
RefSeq Acc Id: ENSMUSP00000120856   ⟸   ENSMUST00000156335
RefSeq Acc Id: ENSMUSP00000147748   ⟸   ENSMUST00000209538
Protein Domains
SB   UEV

Promoters
RGD ID:8664153
Promoter ID:EPDNEW_M10108
Type:initiation region
Name:Tsg101_1
Description:Mus musculus tumor susceptibility gene 101 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38746,919,936 - 46,919,996EPDNEW
RGD ID:6842255
Promoter ID:MM_KWN:50528
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000059640,   OTTMUST00000059641
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36754,175,316 - 54,176,157 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:106581 AgrOrtholog
Ensembl Genes ENSMUSG00000014402 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000014546 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000120856 UniProtKB/TrEMBL
  ENSMUSP00000121314 UniProtKB/TrEMBL
  ENSMUSP00000147701 UniProtKB/TrEMBL
  ENSMUSP00000147748 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000147749 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000014546 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000143413 UniProtKB/TrEMBL
  ENSMUST00000156335 UniProtKB/TrEMBL
  ENSMUST00000209538 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000210664 UniProtKB/TrEMBL
  ENSMUST00000211076 UniProtKB/TrEMBL
Gene3D-CATH 3.10.110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ESCRT_assembly_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SB_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UEV_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22088 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:106581 ENTREZGENE
NCBI Gene 22088 ENTREZGENE
Pfam UEV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vps23_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tsg101 PhenoGen
PROSITE PS51312 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UEV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF140111 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54495 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GRX2_MOUSE UniProtKB/TrEMBL
  A0A1B0GS09_MOUSE UniProtKB/TrEMBL
  A0A1B0GS10_MOUSE UniProtKB/TrEMBL
  D3Z0S9_MOUSE UniProtKB/TrEMBL
  D3Z2V5_MOUSE UniProtKB/TrEMBL
  Q3UCW0 ENTREZGENE, UniProtKB/TrEMBL
  Q3UK08_MOUSE UniProtKB/TrEMBL
  Q61187 ENTREZGENE
  Q6LBE4_MOUSE UniProtKB/TrEMBL
  TS101_MOUSE UniProtKB/Swiss-Prot