Rgcc (regulator of cell cycle) - Rat Genome Database

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Gene: Rgcc (regulator of cell cycle) Rattus norvegicus
Analyze
Symbol: Rgcc
Name: regulator of cell cycle
RGD ID: 619721
Description: Enables protein kinase binding activity. Involved in positive regulation of DNA biosynthetic process. Located in cytoplasm. Orthologous to human RGCC (regulator of cell cycle); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: regulator of cell cycle RGCC; response gene to complement 32; Response Genes to Complement 32; RGC-32; Rgc32
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21554,662,483 - 54,675,320 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1554,662,483 - 54,681,141 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1558,795,709 - 58,808,544 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01559,914,087 - 59,926,922 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01556,738,974 - 56,751,809 (-)NCBIRnor_WKY
Rnor_6.01561,551,861 - 61,564,695 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1561,551,861 - 61,564,695 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01565,214,322 - 65,227,218 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41560,451,831 - 60,452,229 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11560,467,610 - 60,468,001 (-)NCBI
Celera1554,246,727 - 54,259,558 (-)NCBICelera
Cytogenetic Map15q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ampicillin  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
butan-1-ol  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
carbon nanotube  (ISO)
carbonyl sulfide  (EXP)
carmustine  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (EXP)
cholesterol  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
disulfiram  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enilconazole  (ISO)
entinostat  (ISO)
ethanol  (ISO)
etoposide  (ISO)
folic acid  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
hexachlorobenzene  (EXP)
hydrogen cyanide  (ISO)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
indometacin  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lead(II) chloride  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
menadione  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nitrofen  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pioglitazone  (ISO)
potassium chromate  (ISO)
potassium cyanide  (ISO)
progesterone  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
resorcinol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sevoflurane  (EXP)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
triadimefon  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc protoporphyrin  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cellular response to hypoxia  (ISO)
complement activation  (ISO)
fibroblast activation  (ISO,ISS)
negative regulation of angiogenesis  (ISO)
negative regulation of blood vessel endothelial cell migration  (ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of cell-cell adhesion mediated by cadherin  (ISO)
negative regulation of cytokine production  (ISO)
negative regulation of endothelial cell proliferation  (ISO)
negative regulation of exit from mitosis  (ISO)
negative regulation of fibroblast growth factor production  (ISO)
negative regulation of mitotic cell cycle phase transition  (ISO)
positive regulation of collagen biosynthetic process  (ISO)
positive regulation of cyclin-dependent protein serine/threonine kinase activity  (ISO)
positive regulation of cytokine production  (ISO)
positive regulation of DNA biosynthetic process  (IDA)
positive regulation of DNA-binding transcription factor activity  (ISO)
positive regulation of endothelial cell apoptotic process  (ISO)
positive regulation of epithelial to mesenchymal transition  (ISO)
positive regulation of extracellular matrix assembly  (ISO)
positive regulation of extracellular matrix constituent secretion  (ISO)
positive regulation of G1/S transition of mitotic cell cycle  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of mitotic nuclear division  (ISO)
positive regulation of stress fiber assembly  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
regulation of cell cycle  (IEA)
regulation of cyclin-dependent protein serine/threonine kinase activity  (NAS)

Cellular Component
centrosome  (ISO)
cytoplasm  (IBA,IDA,ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Molecular cloning and characterization of RGC-32, a novel gene induced by complement activation in oligodendrocytes. Badea TC, etal., J Biol Chem 1998 Oct 9;273(41):26977-81.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11687586   PMID:15682487   PMID:16675540   PMID:17146433   PMID:18308847   PMID:19158077   PMID:19162005   PMID:19652095   PMID:21307346   PMID:21636805   PMID:21990365   PMID:28536621  


Genomics

Comparative Map Data
Rgcc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21554,662,483 - 54,675,320 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1554,662,483 - 54,681,141 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1558,795,709 - 58,808,544 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01559,914,087 - 59,926,922 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01556,738,974 - 56,751,809 (-)NCBIRnor_WKY
Rnor_6.01561,551,861 - 61,564,695 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1561,551,861 - 61,564,695 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01565,214,322 - 65,227,218 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41560,451,831 - 60,452,229 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11560,467,610 - 60,468,001 (-)NCBI
Celera1554,246,727 - 54,259,558 (-)NCBICelera
Cytogenetic Map15q12NCBI
RGCC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381341,457,550 - 41,470,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1341,457,550 - 41,470,871 (+)EnsemblGRCh38hg38GRCh38
GRCh371342,031,686 - 42,045,007 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361340,929,542 - 40,943,013 (+)NCBINCBI36Build 36hg18NCBI36
Build 341340,929,711 - 40,943,007NCBI
Celera1323,088,009 - 23,101,472 (+)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1322,831,152 - 22,844,599 (+)NCBIHuRef
CHM1_11341,999,088 - 42,012,524 (+)NCBICHM1_1
T2T-CHM13v2.01340,676,691 - 40,689,978 (+)NCBIT2T-CHM13v2.0
Rgcc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391479,526,190 - 79,539,075 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1479,526,196 - 79,539,085 (-)EnsemblGRCm39 Ensembl
GRCm381479,288,750 - 79,301,635 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1479,288,756 - 79,301,645 (-)EnsemblGRCm38mm10GRCm38
MGSCv371479,688,557 - 79,701,442 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361478,022,906 - 78,035,790 (-)NCBIMGSCv36mm8
Celera1476,789,236 - 76,802,360 (-)NCBICelera
Cytogenetic Map14D3NCBI
Rgcc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555184,788,656 - 4,801,204 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555184,788,857 - 4,800,273 (-)NCBIChiLan1.0ChiLan1.0
RGCC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11341,228,643 - 41,241,909 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1341,228,643 - 41,241,909 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01322,639,289 - 22,652,594 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RGCC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1229,199,204 - 9,209,297 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha229,192,421 - 9,210,192 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0229,422,365 - 9,439,870 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl229,422,374 - 9,439,855 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1229,118,026 - 9,135,425 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0229,167,964 - 9,185,229 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0229,179,949 - 9,199,706 (-)NCBIUU_Cfam_GSD_1.0
Rgcc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945151,654,293 - 151,666,885 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936667232,782 - 245,131 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936667232,807 - 245,131 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RGCC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1125,478,879 - 25,496,519 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11125,481,845 - 25,496,548 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21126,202,900 - 26,215,014 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RGCC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1319,681,700 - 19,695,655 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl319,681,874 - 19,693,644 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605724,523,086 - 24,537,162 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rgcc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474813,710,044 - 13,722,917 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474813,710,901 - 13,722,951 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rgcc
42 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:326
Count of miRNA genes:208
Interacting mature miRNAs:234
Transcripts:ENSRNOT00000068216
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155284790873690657Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat

Markers in Region
RH143315  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21554,675,220 - 54,675,341 (+)MAPPERmRatBN7.2
Rnor_6.01561,564,596 - 61,564,716NCBIRnor6.0
Rnor_5.01565,227,057 - 65,227,177UniSTSRnor5.0
Celera1554,259,459 - 54,259,579UniSTS
RH 3.4 Map15460.5UniSTS
Cytogenetic Map15q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 27 34 18 17 18 5 7 52 31 23 11 5
Low 3 16 14 14 2 14 3 4 22 4 17 3
Below cutoff 9 9 9 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000068216   ⟹   ENSRNOP00000060481
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1554,662,488 - 54,675,446 (-)Ensembl
Rnor_6.0 Ensembl1561,551,861 - 61,564,695 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115573   ⟹   ENSRNOP00000092762
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1554,662,483 - 54,681,141 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118400   ⟹   ENSRNOP00000080067
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1554,663,459 - 54,675,360 (-)Ensembl
RefSeq Acc Id: NM_054008   ⟹   NP_446460
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21554,662,483 - 54,675,320 (-)NCBI
Rnor_6.01561,551,861 - 61,564,695 (-)NCBI
Rnor_5.01565,214,322 - 65,227,218 (-)NCBI
RGSC_v3.41560,451,831 - 60,452,229 (-)RGD
Celera1554,246,727 - 54,259,558 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_446460 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC68839 (Get FASTA)   NCBI Sequence Viewer  
  EDM02351 (Get FASTA)   NCBI Sequence Viewer  
  Q9Z2P4 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_446460   ⟸   NM_054008
- UniProtKB: Q9Z2P4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000060481   ⟸   ENSRNOT00000068216
RefSeq Acc Id: ENSRNOP00000080067   ⟸   ENSRNOT00000118400
RefSeq Acc Id: ENSRNOP00000092762   ⟸   ENSRNOT00000115573

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z2P4-F1-model_v2 AlphaFold Q9Z2P4 1-137 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699845
Promoter ID:EPDNEW_R10368
Type:single initiation site
Name:Rgcc_1
Description:regulator of cell cycle
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,564,737 - 61,564,797EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619721 AgrOrtholog
BioCyc Gene G2FUF-13000 BioCyc
Ensembl Genes ENSRNOG00000042960 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000060481 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000080067.1 UniProtKB/TrEMBL
  ENSRNOP00000092762.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068216 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000115573.1 UniProtKB/TrEMBL
  ENSRNOT00000118400.1 UniProtKB/TrEMBL
InterPro RGCC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:117183 UniProtKB/Swiss-Prot
NCBI Gene 117183 ENTREZGENE
PANTHER PTHR32193 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RGCC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rgcc PhenoGen
UniProt A0A8I5ZSA3_RAT UniProtKB/TrEMBL
  A0A8I6AG65_RAT UniProtKB/TrEMBL
  Q9Z2P4 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-10 Rgcc  regulator of cell cycle  Rgc32  response gene to complement 32  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Rgc32  response gene to complement 32    Rgc32 protein  Name updated 1299863 APPROVED
2002-08-07 Rgc32  Rgc32 protein      Symbol and Name status set to provisional 70820 PROVISIONAL