 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology AnnotationsMolecular Pathway Annotations |
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Analyze GeneStrainQTL List |
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GOLF (Gene-Ortholog Location Finder) |
Gene Ontology AnnotationsMolecular Pathway AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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Molecular Pathway AnnotationsReferences - curated| 1. | Bingol B and Schuman EM, Nature. 2006 Jun 29;441(7097):1144-8. |
| 2. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 3. | GOA data from the GO Consortium |
| 4. | MGD data from the GO Consortium |
| 5. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 6. | Pipeline to import KEGG annotations from KEGG into RGD |
| 7. | Puente XS and Lopez-Otin C, Genome Res 2004 Apr;14(4):609-22. |
| 8. | RGD automated data pipeline |
| 9. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 10. | RGD automated import pipeline for gene-chemical interactions |
| 11. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
| 12. | Tanaka K, etal., Biochem Biophys Res Commun 1990 Sep 14;171(2):676-83. |
| 13. | Tentative Sequence Data IDs. TIGR Gene Index, Rat Data |
References - uncurated| PubMed | 2249692 2335242 9688553 15489334 16207813 16641100 16857966 17323924 19056867 19208651 20458337 20498273 21630459 22793692 23376485 25002582 26524591 |
Genomics
Comparative Map Data| Psma3 (Rattus norvegicus - Norway rat) |
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| PSMA3 (Homo sapiens - human) |
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| Psma3 (Mus musculus - house mouse) |
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| Psma3 (Chinchilla lanigera - long-tailed chinchilla) |
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| PSMA3 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| PSMA3 (Canis lupus familiaris - dog) |
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| Psma3 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| PSMA3 (Sus scrofa - pig) |
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Position Markers| RH127444 |
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| RH138090 |
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| RH130667 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
| High | ||||||||||||||||
| Medium | 22 | 43 | 23 | 15 | 4 | 3 | 3 | 8 | 26 | 25 | 11 | 11 | 41 | 35 | 8 | 8 |
| Low | ||||||||||||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_017280 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_017594059 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AAHX01044957 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01044958 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC128303 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC081817 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473947 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| D90258 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ211111 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ219582 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ222497 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ224319 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ227243 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ233787 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| X55985 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000010753 ⟹ ENSRNOP00000010753 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000075868 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | NM_017280 ⟹ NP_058976 | ||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
CCATGAGCTCCATTGGCACTGGGTATGACCTGTCAGCCTCTACATTCTCTCCTGATGGAAGAGThide sequence |
| RefSeq Acc Id: | XM_017594059 ⟹ XP_017449548 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GTATGACCTGTCAGCCTCTACATTCTCTCCTGATGGAAGAGTTTTCCAAGTTGAATATGCTATGhide sequence |
Protein Sequences| Protein RefSeqs | NP_058976 | (Get FASTA) | NCBI Sequence Viewer |
| XP_017449548 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAH81817 | (Get FASTA) | NCBI Sequence Viewer |
| BAA14302 | (Get FASTA) | NCBI Sequence Viewer | |
| CAA39457 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM03560 | (Get FASTA) | NCBI Sequence Viewer | |
| P18422 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_058976 ⟸ NM_017280 |
| - UniProtKB: | P18422 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNhide sequence |
| RefSeq Acc Id: | XP_017449548 ⟸ XM_017594059 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGhide sequence |
| RefSeq Acc Id: | ENSRNOP00000010753 ⟸ ENSRNOT00000010753 |
TranscriptomePromoters| RGD ID: | 13694647 | |||||||||
| Promoter ID: | EPDNEW_R5170 | |||||||||
| Type: | initiation region | |||||||||
| Name: | Psma3_1 | |||||||||
| Description: | proteasome subunit alpha 3 | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:61844 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000007851 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000010753 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Transcript | ENSRNOT00000010753 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Gene3D-CATH | 3.60.20.10 | UniProtKB/Swiss-Prot |
| IMAGE_CLONE | IMAGE:7110009 | IMAGE-MGC_LOAD |
| InterPro | Ntn_hydrolases_N | UniProtKB/Swiss-Prot |
| Proteasome_alpha-type | UniProtKB/Swiss-Prot | |
| Proteasome_alpha_3 | UniProtKB/Swiss-Prot | |
| Proteasome_asu_N | UniProtKB/Swiss-Prot | |
| Proteasome_sua/b | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:29670 | UniProtKB/Swiss-Prot |
| rno:408248 | UniProtKB/Swiss-Prot | |
| MGC_CLONE | MGC:93511 | IMAGE-MGC_LOAD |
| NCBI Gene | 29670 | ENTREZGENE |
| PANTHER | PTHR11599:SF10 | UniProtKB/Swiss-Prot |
| Pfam | Proteasome | UniProtKB/Swiss-Prot |
| Proteasome_A_N | UniProtKB/Swiss-Prot | |
| PhenoGen | Psma3 | PhenoGen |
| PROSITE | PROTEASOME_ALPHA_1 | UniProtKB/Swiss-Prot |
| PROTEASOME_ALPHA_2 | UniProtKB/Swiss-Prot | |
| SMART | Proteasome_A_N | UniProtKB/Swiss-Prot |
| Superfamily-SCOP | SSF56235 | UniProtKB/Swiss-Prot |
| TIGR | TC216589 | |
| UniGene | Rn.129822 | ENTREZGENE |
| Rn.3997 | ENTREZGENE | |
| UniProt | P18422 | ENTREZGENE, UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2019-09-13 | Psma3 | proteasome 20S subunit alpha 3 | Psma3 | proteasome subunit alpha 3 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2015-08-19 | Psma3 | proteasome subunit alpha 3 | Psma3 | proteasome (prosome, macropain) subunit, alpha type 3 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2002-06-10 | Psma3 | proteasome (prosome, macropain) subunit, alpha type 3 | Name updated | 70584 | APPROVED |
RGD Curation Notes| Note Type | Note | Reference |
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| More on Psma3 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 61844 |
| Created: | 2001-04-11 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
