Yes1 (YES proto-oncogene 1, Src family tyrosine kinase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Yes1 (YES proto-oncogene 1, Src family tyrosine kinase) Rattus norvegicus
Analyze
Symbol: Yes1
Name: YES proto-oncogene 1, Src family tyrosine kinase
RGD ID: 3977
Description: Enables epidermal growth factor receptor binding activity and protein tyrosine kinase activity. Involved in protein autophosphorylation. Located in plasma membrane. Is active in glutamatergic synapse and postsynaptic specialization, intracellular component. Orthologous to human YES1 (YES proto-oncogene 1, Src family tyrosine kinase); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; glypican signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: c-Yes; LOC363300; MGC94936; p60c-yes; p61-Yes; tyrosine-protein kinase Yes; Yamagichi sarcoma viral (v-yes-1) oncogene homolog 1; Yamaguchi sarcoma viral (v-yes) oncogene homolog; Yamaguchi sarcoma viral (v-yes) oncogene homolog 1; Yamaguchi sarcoma viral oncogene homolog 1; Yes
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29113,200,256 - 113,275,942 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl9113,200,256 - 113,299,837 (+)Ensembl
Rnor_6.09121,802,471 - 121,918,906 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9121,802,673 - 121,902,678 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09121,252,194 - 121,327,422 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49112,516,831 - 112,564,072 (+)NCBIRGSC3.4rn4RGSC3.4
Celera9110,304,110 - 110,380,060 (+)NCBICelera
Cytogenetic Map9q38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Identification of autophosphorylation sites in c-Yes purified from rat liver plasma membranes. Ariki M, etal., J Biochem (Tokyo) 1997 Jan;121(1):104-11.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Interactions between Src family protein tyrosine kinases and PSD-95. Kalia LV and Salter MW, Neuropharmacology. 2003 Nov;45(6):720-8.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Caveolin-1 facilitates mechanosensitive protein kinase B (Akt) signaling in vitro and in vivo. Sedding DG, etal., Circ Res. 2005 Apr 1;96(6):635-42. Epub 2005 Feb 24.
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12. A kinase cascade leading to Rab11-FIP5 controls transcytosis of the polymeric immunoglobulin receptor. Su T, etal., Nat Cell Biol. 2010 Dec;12(12):1143-53. Epub 2010 Oct 31.
Additional References at PubMed
PMID:1381360   PMID:9799234   PMID:10861086   PMID:11448999   PMID:11546805   PMID:12496267   PMID:12538589   PMID:12923167   PMID:14634819   PMID:15039424   PMID:16921024   PMID:17623777  
PMID:18682436   PMID:18697750   PMID:19199708   PMID:20605918   PMID:20624904   PMID:21256972   PMID:21385842   PMID:21423176   PMID:21829547   PMID:22617836   PMID:23169788   PMID:23376485  
PMID:25117412  


Genomics

Comparative Map Data
Yes1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29113,200,256 - 113,275,942 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl9113,200,256 - 113,299,837 (+)Ensembl
Rnor_6.09121,802,471 - 121,918,906 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9121,802,673 - 121,902,678 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09121,252,194 - 121,327,422 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49112,516,831 - 112,564,072 (+)NCBIRGSC3.4rn4RGSC3.4
Celera9110,304,110 - 110,380,060 (+)NCBICelera
Cytogenetic Map9q38NCBI
YES1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3818721,588 - 812,753 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl18721,588 - 812,546 (-)EnsemblGRCh38hg38GRCh38
GRCh3718721,588 - 812,243 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3618711,592 - 802,327 (-)NCBINCBI36hg18NCBI36
Build 3418711,591 - 802,327NCBI
Celera18595,885 - 635,919 (-)NCBI
Cytogenetic Map18p11.32NCBI
HuRef18681,901 - 721,946 (-)NCBIHuRef
CHM1_118720,957 - 811,714 (-)NCBICHM1_1
T2T-CHM13v2.018875,925 - 966,538 (-)NCBI
Yes1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39532,768,502 - 32,844,410 (+)NCBIGRCm39mm39
GRCm39 Ensembl532,768,515 - 32,844,401 (+)Ensembl
GRCm38532,611,171 - 32,687,066 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl532,611,171 - 32,687,057 (+)EnsemblGRCm38mm10GRCm38
MGSCv37532,913,606 - 32,989,430 (+)NCBIGRCm37mm9NCBIm37
MGSCv36532,887,814 - 32,963,638 (+)NCBImm8
Celera530,085,521 - 30,153,048 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.33NCBI
Yes1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554029,226,295 - 9,256,044 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554029,199,704 - 9,255,183 (+)NCBIChiLan1.0ChiLan1.0
YES1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11817,201,973 - 17,248,074 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1815,848,765 - 17,245,246 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01813,513,124 - 13,605,379 (+)NCBIMhudiblu_PPA_v0panPan3
YES1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1767,532,790 - 67,598,285 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl767,532,790 - 67,598,285 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha766,986,484 - 67,051,985 (-)NCBI
ROS_Cfam_1.0767,598,792 - 67,664,338 (-)NCBI
ROS_Cfam_1.0 Ensembl767,598,792 - 67,664,338 (-)Ensembl
UMICH_Zoey_3.1767,275,521 - 67,341,129 (-)NCBI
UNSW_CanFamBas_1.0767,287,110 - 67,352,610 (-)NCBI
UU_Cfam_GSD_1.0767,589,051 - 67,654,785 (-)NCBI
YES1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6105,505,479 - 105,600,687 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16105,505,944 - 105,600,694 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
YES1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11860,086,011 - 60,168,973 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1860,088,525 - 60,120,114 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605034,878,228 - 34,967,209 (-)NCBIVero_WHO_p1.0
Yes1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477011,190,595 - 11,221,512 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462477011,190,103 - 11,275,823 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D9Got128  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29113,266,747 - 113,267,037 (+)MAPPERmRatBN7.2
Rnor_6.09121,868,615 - 121,868,975NCBIRnor6.0
Rnor_5.09121,318,158 - 121,318,518UniSTSRnor5.0
RGSC_v3.49112,554,135 - 112,554,435RGDRGSC3.4
RGSC_v3.49112,554,148 - 112,554,435UniSTSRGSC3.4
RGSC_v3.19112,763,627 - 112,763,915RGD
Celera9110,370,870 - 110,371,155UniSTS
RH 3.4 Map9846.6RGD
RH 3.4 Map9846.6UniSTS
Cytogenetic Map9q38UniSTS
AI323763  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29113,273,825 - 113,273,918 (+)MAPPERmRatBN7.2
Rnor_6.09121,875,764 - 121,875,856NCBIRnor6.0
Rnor_5.09121,325,307 - 121,325,399UniSTSRnor5.0
RGSC_v3.49112,561,956 - 112,562,048UniSTSRGSC3.4
Celera9110,377,944 - 110,378,036UniSTS
Cytogenetic Map9q38UniSTS
RH140391  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29113,273,683 - 113,273,918 (+)MAPPERmRatBN7.2
Rnor_6.09121,875,622 - 121,875,856NCBIRnor6.0
Rnor_5.09121,325,165 - 121,325,399UniSTSRnor5.0
RGSC_v3.49112,561,814 - 112,562,048UniSTSRGSC3.4
Celera9110,377,802 - 110,378,036UniSTS
RH 3.4 Map9833.01UniSTS
Cytogenetic Map9q38UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:175
Count of miRNA genes:136
Interacting mature miRNAs:152
Transcripts:ENSRNOT00000056250, ENSRNOT00000056251
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 32 24 14 12 14 2 2 68 34 37 11 2
Low 1 11 33 27 7 27 6 9 6 1 4 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001398584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001398585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_033298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB037472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D82931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000056250   ⟹   ENSRNOP00000053093
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl9121,831,716 - 121,873,578 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000056251   ⟹   ENSRNOP00000053094
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9113,200,325 - 113,274,017 (+)Ensembl
Rnor_6.0 Ensembl9121,831,716 - 121,877,795 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086534   ⟹   ENSRNOP00000072395
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9113,200,256 - 113,299,837 (+)Ensembl
Rnor_6.0 Ensembl9121,802,673 - 121,902,678 (+)Ensembl
RefSeq Acc Id: NM_033298   ⟹   NP_150640
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29113,200,256 - 113,275,942 (+)NCBI
Rnor_6.09121,802,653 - 121,877,879 (+)NCBI
Rnor_5.09121,252,194 - 121,327,422 (+)NCBI
RGSC_v3.49112,516,831 - 112,564,072 (+)RGD
Celera9110,304,110 - 110,380,060 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245675   ⟹   XP_006245737
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29113,200,261 - 113,274,018 (+)NCBI
Rnor_6.09121,802,639 - 121,875,956 (+)NCBI
Rnor_5.09121,252,194 - 121,327,422 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_150640   ⟸   NM_033298
- UniProtKB: Q6AXQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245737   ⟸   XM_006245675
- Peptide Label: isoform X1
- UniProtKB: Q99PW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000053094   ⟸   ENSRNOT00000056251
RefSeq Acc Id: ENSRNOP00000053093   ⟸   ENSRNOT00000056250
RefSeq Acc Id: ENSRNOP00000072395   ⟸   ENSRNOT00000086534
Protein Domains
Protein kinase   SH2   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LM93-F1-model_v2 AlphaFold F1LM93 1-541 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696923
Promoter ID:EPDNEW_R7442
Type:initiation region
Name:Yes1_1
Description:YES proto-oncogene 1, Src family tyrosine kinase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.09121,802,712 - 121,802,772EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3977 AgrOrtholog
BioCyc Gene G2FUF-26306 BioCyc
Ensembl Genes ENSRNOG00000037227 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000053094 ENTREZGENE
  ENSRNOP00000053094.4 UniProtKB/TrEMBL
  ENSRNOP00000072395 ENTREZGENE
  ENSRNOP00000072395.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000056251 ENTREZGENE
  ENSRNOT00000056251.6 UniProtKB/TrEMBL
  ENSRNOT00000086534 ENTREZGENE
  ENSRNOT00000086534.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.505.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7112783 IMAGE-MGC_LOAD
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Yes_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24884 UniProtKB/TrEMBL
MGC_CLONE MGC:94936 IMAGE-MGC_LOAD
NCBI Gene 24884 ENTREZGENE
Pfam Pkinase_Tyr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Yes1 PhenoGen
PRINTS SH2DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYRKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TyrKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55550 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K2V7_RAT UniProtKB/TrEMBL
  F1LM93 ENTREZGENE
  Q6AXQ3 ENTREZGENE, UniProtKB/TrEMBL
  Q99PW1 ENTREZGENE, UniProtKB/TrEMBL
  YES_RAT UniProtKB/Swiss-Prot
UniProt Secondary F1LM92 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-03-16 Yes1  YES proto-oncogene 1, Src family tyrosine kinase  Yes1  Yamaguchi sarcoma viral (v-yes) oncogene homolog 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-02-23 Yes1  Yamaguchi sarcoma viral (v-yes) oncogene homolog 1  Yes_predicted  Yamaguchi sarcoma viral (v-yes) oncogene homolog (predicted)  Data Merged 737654 APPROVED
2005-01-12 Yes_predicted  Yamaguchi sarcoma viral (v-yes) oncogene homolog (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL
2003-04-09 Yes1  Yamaguchi sarcoma viral (v-yes) oncogene homolog 1    Yamagichi sarcoma viral (v-yes-1) oncogene homolog 1  Name updated 629478 APPROVED
2002-06-10 Yes1  Yamagichi sarcoma viral (v-yes-1) oncogene homolog 1      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized to the plasma membrane fraction 634514