Slc18a1 (solute carrier family 18 member A1)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| FTP Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Slc18a1 (solute carrier family 18 member A1) Rattus norvegicus

Analyze

Symbol:

Slc18a1

Name:

solute carrier family 18 member A1

RGD ID:

3693

Description:

Exhibits enzyme binding activity and serotonin:sodium symporter activity. Involved in cellular response to lithium ion; regulation of ion transport; and serotonin uptake. Localizes to cytoplasm. Human ortholog(s) of this gene implicated in bipolar disorder and schizophrenia. Orthologous to human SLC18A1 (solute carrier family 18 member A1); PARTICIPATES IN Parkinson's disease pathway; INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

CGAT; chromaffin granule amine transporter; LOC684870; similar to solute carrier family 18 (vesicular monoamine), member 1; solute carrier family 18 (vesicular monoamine transporter), member 1; solute carrier family 18 (vesicular monoamine), member 1; solute carrier family 18 member 1; solute carrier family 18, member 1; Solute carrier family18 (vesicular monoamine) member 1 (chromaffin granule amine transporter); VAT1; vesicular amine transporter 1; vesicular monoamine transporter 1; VMAT-1; VMAT1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	16	22,358,646 - 22,395,183 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	22,361,998 - 22,395,183 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	22,256,523 - 22,289,704 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	22,356,304 - 22,389,827 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	22,356,297 - 22,389,825 (+)	NCBI
Celera	16	20,629,165 - 20,846,643 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI
RH 3.4 Map	16	253.67	RGD

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

bipolar disorder (ISO)

schizophrenia (ISO)

von Hippel-Lindau disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(R)-noradrenaline (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

2-phenylethylamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

9,10-dimethoxy-3-isobutyl-1,3,4,6,7,11b-hexahydro-2H-pyrido[2,1-a]isoquinolin-2-one (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

chlorpyrifos (EXP)

copper atom (EXP)

copper(0) (EXP)

dextran sulfate (ISO)

diazinon (EXP)

dichlorine (EXP)

dichloroacetic acid (ISO)

dieldrin (EXP)

dopamine (ISO)

furan (EXP)

gentamycin (EXP)

GW 4064 (ISO)

histamine (ISO)

lead diacetate (EXP)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (EXP)

ozone (EXP)

pirinixic acid (ISO)

propanal (ISO)

reserpine (ISO)

serotonin (ISO)

sodium atom (EXP)

tetrabenazine (ISO)

titanium dioxide (ISO)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

aminergic neurotransmitter loading into synaptic vesicle (IBA)

cellular response to lithium ion (IEP)

negative regulation of serotonin uptake (IMP)

neurotransmitter transport (IEA)

positive regulation of dopamine secretion (IMP)

serotonin uptake (IDA)

transmembrane transport (IEA)

xenobiotic transport (IEA)

Cellular Component

cytoplasm (IDA)

cytoplasmic vesicle membrane (IEA)

integral component of membrane (IEA)

synapse (IEA,ISO)

synaptic vesicle membrane (IBA)

terminal bouton (IBA)

Molecular Function

enzyme binding (IPI)

protein binding (ISO)

serotonin:sodium symporter activity (IBA,IDA)

transmembrane transporter activity (IBA)

xenobiotic transmembrane transporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Parkinson's disease pathway (IEA)

References

References - curated


1.	Brunk I, etal., J Biol Chem. 2006 Nov 3;281(44):33373-85. Epub 2006 Aug 22.
2.	Brunk I, etal., J Biol Chem. 2009 Jan 9;284(2):1050-6. Epub 2008 Nov 13.
3.	Cartier EA, etal., J Biol Chem. 2010 Jan 15;285(3):1957-66. Epub 2009 Nov 10.
4.	Cordeiro ML, etal., J Neurochem. 2000 Dec;75(6):2622-5.
5.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	GOA data from the GO Consortium
7.	Huynh TT, etal., Eur J Endocrinol. 2005 Oct;153(4):551-63.
8.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
9.	Liu Y, etal., Cell 1992 Aug 21;70(4):539-51.
10.	Lohoff FW, etal., Neuropsychobiology. 2008;57(1-2):55-60. Epub 2008 May 2.
11.	Lohoff FW, etal., Neuropsychopharmacology. 2006 Dec;31(12):2739-47. Epub 2006 Aug 23.
12.	Maurel A, etal., Am J Physiol Renal Physiol. 2007 May;292(5):F1592-8. Epub 2007 Jan 23.
13.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
14.	Pipeline to import KEGG annotations from KEGG into RGD
15.	RGD automated data pipeline
16.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17.	RGD automated import pipeline for gene-chemical interactions
18.	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:12534970	PMID:22253933	PMID:23201251

Genomics

Comparative Map Data

Slc18a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	16	22,358,646 - 22,395,183 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	22,361,998 - 22,395,183 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	22,256,523 - 22,289,704 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	22,356,304 - 22,389,827 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	22,356,297 - 22,389,825 (+)	NCBI
Celera	16	20,629,165 - 20,846,643 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI
RH 3.4 Map	16	253.67	RGD

SLC18A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	8	20,144,855 - 20,183,206 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	8	20,144,855 - 20,183,139 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	8	20,002,366 - 20,040,717 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	20,046,652 - 20,084,997 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	8	20,046,651 - 20,084,997	NCBI
Celera	8	18,964,997 - 19,003,346 (-)	NCBI
Cytogenetic Map	8	p21.3	NCBI
HuRef	8	18,542,580 - 18,580,897 (-)	NCBI		HuRef
CHM1_1	8	20,204,176 - 20,242,504 (-)	NCBI		CHM1_1

Slc18a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	69,490,360 - 69,547,951 (-)	NCBI	GRCm39		mm39
GRCm38	8	69,037,708 - 69,089,238 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	69,037,711 - 69,089,235 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	71,561,607 - 71,613,121 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	71,966,697 - 72,018,211 (-)	NCBI			mm8
Celera	8	71,585,811 - 71,639,074 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	33.88	NCBI

Slc18a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	43,821,296 - 43,848,399 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	43,821,978 - 43,848,403 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC18A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	8	16,318,744 - 16,353,708 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	16,318,744 - 16,353,708 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	8	19,369,843 - 19,408,412 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SLC18A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	25	36,872,636 - 36,904,056 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	25	36,859,047 - 36,904,057 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Slc18a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936555	4,249,821 - 4,271,379 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC18A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	4,243,557 - 4,278,989 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	4,243,553 - 4,279,341 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	4,278,115 - 4,313,822 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC18A1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1 Ensembl	8	18,214,701 - 18,249,731 (-)	Ensembl
ChlSab1.1	8	18,214,703 - 18,250,025 (-)	NCBI

Slc18a1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624758	15,863,410 - 15,894,958 (-)	NCBI

Position Markers

RH94391

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	16	22,395,003 - 22,395,163	NCBI	Rnor6.0
Rnor_5.0	16	22,289,524 - 22,289,684	UniSTS	Rnor5.0
RGSC_v3.4	16	22,389,647 - 22,389,807	UniSTS	RGSC3.4
Celera	16	20,846,463 - 20,846,623	UniSTS
Cytogenetic Map	16	p14	UniSTS
RH 3.4 Map	16	253.67	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	24228366	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	27556253	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	27556253	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	27556253	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	31816439	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	33160624	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	34465490	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	41240937	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	41240937	Rat
631561	Hcuc2	Hepatic copper content QTL 2	2.8		hepatic copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	41240957	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	244593	45244593	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	1090054	86162972	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1340741	46340741	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	1550187	49247447	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	1550187	63210301	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1550187	63210301	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	1550187	63210301	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	1550187	63210301	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1728297	46728297	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	4136355	23105837	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4136355	45905331	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	16	5013802	45905331	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	5013802	45905331	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	5013802	45905331	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	5013802	50013802	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	5013802	50169318	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	5013802	52144919	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	5013802	64012784	Rat
631517	Scl9	Serum cholesterol level QTL 9	3.3		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	16	17309396	22744540	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	19398187	70590230	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	19398187	70590230	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	19398187	70590230	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	19398187	70590230	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	20755556	80316424	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	58
Count of miRNA genes:	50
Interacting mature miRNAs:	57
Transcripts:	ENSRNOT00000016193
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2		8								1
Low	1	24	14	14		14			74	6	25
Below cutoff		17	15	13	4	13	2	2		29	13	5	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_013152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07024952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AABR07024953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01086914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01086915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY168444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M97380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000016193 ⟹ ENSRNOP00000016193

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	16	22,361,998 - 22,395,183 (+)	Ensembl

RefSeq Acc Id:

NM_013152 ⟹ NP_037284

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	22,362,002 - 22,395,183 (+)	NCBI
Rnor_5.0	16	22,256,523 - 22,289,704 (+)	NCBI
RGSC_v3.4	16	22,356,304 - 22,389,827 (+)	RGD
Celera	16	20,629,165 - 20,846,643 (+)	NCBI

Sequence:

show sequence

CACATCCACTTTCAGAGAACAGAGTCTCTGCTGTCTTGCCAACGGCTGCTCCTTCCTCTCTGAG
TGCCTCACATCAAGATAAGCTAGAAGTGAGCTTCACTGGACCAGGCAGACTTCTTCTCCTATAA
AGGTGACAGAAGACCACATTTGTCAAGGGGTCTTCCTAAGCCCTGGGAGGAGAAGCCCCCACCA
TCTCACTCCCTACCCAGCCCAGCCTCCTGCAGCCCTTGCCATGCTCCAGGTTGTTCTGGGTGCT
CCTCAGCGGTTGCTGAAGGAAGGAAGGCAGTCCCGCAAGCTGGTGCTGGTGGTGGTGTTCGTGG
CTCTGCTTCTGGACAACATGCTGCTCACTGTGGTGGTGCCCATTGTGCCCACCTTCCTGTACGC
GACAGAGTTCAAAGACAGCAACTCTTCTCTGCATAGGGGTCCTTCTGTAAGCTCCCAGCAAGCT
CTCACCTCTCCTGCCTTCTCTACCATATTCTCCTTCTTTGACAACACCACCACAACTGTAGAAG
AACATGTACCCTTCCGTGTAACTTGGACAAATGGCACCATCCCTCCTCCAGTCACTGAAGCCAC
CTCAGTACCAAAAAACAACTGCTTGCAAGGGATAGAGTTCTTAGAAGAAGAAAACGTTCGGATT
GGGATTCTATTTGCTTCAAAAGCTTTGATGCAACTTCTGGTCAACCCATTTGTAGGACCTCTTA
CTAACAGGATTGGCTATCACATCCCCATGTTTGTTGGCTTTATGATCATGTTTCTCTCCACACT
AATGTTTGCTTTCTCTGGCACCTATGCCCTGCTATTTGTGGCCCGAACTCTCCAAGGCATTGGA
TCTTCGTTTTCATCTGTTGCAGGACTTGGGATGCTGGCCAGTGTCTATACTGACAACTATGAGA
GAGGGAGAGCCATGGGAATTGCTTTGGGGGGCCTGGCTTTGGGACTTCTGGTGGGAGCACCTTT
CGGAAGTGTGATGTATGAATTTGTGGGCAAGTCCTCACCATTCCTCATCTTGGCCTTCTTGGCA
CTTCTGGATGGAGCTCTCCAACTTTGCATCCTGTGGCCTTCGAAAGTGTCTCCTGAGAGTGCCA
TGGGGACTCCGCTTTTGACGCTTCTCAAAGACCCTTACATCCTGGTAGCAGCAGGTTCCATCTG
CTTGGCCAACATGGGTGTCGCCATACTAGAGCCCACGCTGCCCATCTGGATGATGCAGACCATG
TGCTCCCCCGAGTGGCAGCTAGGTCTGGCTTTCTTGCCTGCTAGTGTGGCCTACCTCATTGGCA
CGAACCTCTTTGGTGTGTTGGCTAACAAGATGGGTCGGTGGCTGTGCTCCCTTGTTGGGATGGT
GGCAGTAGGTATCAGCTTGCTCTGTGTACCTCTGGCTCACAATATTTTTGGTCTTATTGGCCCC
AATGCAGGCCTTGGCTTTGCCATAGGAATGGTGGATTCCTCTCTGATGCCCATCATGGGATACC
TGGTGGACTTACGCCACACCTCTGTGTATGGGAGTGTCTATGCCATCGCCGATGTGGCCTTTTG
TGTGGGCTTTGCTATTGGCCCATCTACTGGGGGTGTTATCGTACAGGTCATTGGCTTTCCTTGG
CTCATGGTCATCATTGGTACCATCAACATCATTTATGCTCCTCTCTGCTGCTTCCTGCAGAACC
CGCCAGCTAAGGAGGAGAAGCGTGCAATTCTGAGCCAGGAATGCCCCACAGAGACCCAGATGTA
CACAGTCCAGAAGCCCACAAAGGAGTTTCCACTAGGAGAGAACAGCGATGATCCTAGCAGCGGG
GAGTAACTGCGGAGGGCGATATCTGCGCCTCACATCTACAGGGACCAGTCTACTACAGATTCAA
TAATTTTCACTTTCCTCTCCTCCAGGCCACTGCCTTCCTCCCTTCTTATTGATACCTTTCCTTT
ACTCACCTGTAAGTGCAACCCACCACTCTCCCTCTGTGCTTTGACACCACCCATGGCCCACTTT
TTGTGGGAGGACAGTGCTATTTCCTGCCAGGCCAAAGCGAAGCTGATTAAAGCTGAGTTGTGAC
AAGTTCTGCAAGGGGTGACTCACTTCCTGCAGGCAGGACTGAACAATGTGCCTGCGAAATCAGG
GGGACAAATGACAAGCCTGCCTTTCTTCTCTGATTGTTTTTTTTTTTTTGACATATTACCAATA
TGTCCTAAAATTTGACTTGTGTCCTGTGAAATGCTTTCCCCTTATTTTTTCCAGTTTAGCTTCT
ATACATACGGGTTTTTGCTTATTTTATGTGCTAAAATTGTTTACCTTCATTAAGTGAGGCCTTC
CTACTTTCTTCATCGCCCAATTGAGAGGAAATAAACAACTTTCTTAGGCTTGA

hide sequence

RefSeq Acc Id:

XM_006252993 ⟹ XP_006253055

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	22,363,657 - 22,395,183 (+)	NCBI
Rnor_5.0	16	22,256,523 - 22,289,704 (+)	NCBI

Sequence:

show sequence

TTAAAACTATTTAAAAATATAAGGGAAGAGAGAGCAGTGGCTCAGATGTCTACACCACTCAGAT
AAGAGATCAGTGCCTGACAGTTGAGAAACAAGAAGGCTGTTCGTCTGGAGAGTCTATTTAATGC
GGTAGGTATAATTTCAGACCTAAATCTCTGGACAGCAAAACCTTCTCTGGAAGGCATTGTGGGA
AATGTTGAGTTATTGAGATTATATAAAATGAACAAAGAGGCACAAAAAATTCAAACTCTTGTAC
TATTTGTAACCCTTCACACTTTTCTTTTGAACAGTGAGCTTCACTGGACCAGGCAGACTTCTTC
TCCTATAAAGGTGACAGAAGACCACATTTGTCAAGGGGTCTTCCTAAGCCCTGGGAGGAGAAGC
CCCCACCATCTCACTCCCTACCCAGCCCAGCCTCCTGCAGCCCTTGCCATGCTCCAGGTTGTTC
TGGGTGCTCCTCAGCGGTTGCTGAAGGAAGGAAGGCAGTCCCGCAAGCTGGTGCTGGTGGTGGT
GTTCGTGGCTCTGCTTCTGGACAACATGCTGCTCACTGTGGTGGTGCCCATTGTGCCCACCTTC
CTGTACGCGACAGAGTTCAAAGACAGCAACTCTTCTCTGCATAGGGGTCCTTCTGTAAGCTCCC
AGCAAGCTCTCACCTCTCCTGCCTTCTCTACCATATTCTCCTTCTTTGACAACACCACCACAAC
TGTAGAAGAACATGTACCCTTCCGTGTAACTTGGACAAATGGCACCATCCCTCCTCCAGTCACT
GAAGCCACCTCAGTACCAAAAAACAACTGCTTGCAAGGGATAGAGTTCTTAGAAGAAGAAAACG
TTCGGATTGGGATTCTATTTGCTTCAAAAGCTTTGATGCAACTTCTGGTCAACCCATTTGTAGG
ACCTCTTACTAACAGGATTGGCTATCACATCCCCATGTTTGTTGGCTTTATGATCATGTTTCTC
TCCACACTAATGTTTGCTTTCTCTGGCACCTATGCCCTGCTATTTGTGGCCCGAACTCTCCAAG
GCATTGGATCTTCGTTTTCATCTGTTGCAGGACTTGGGATGCTGGCCAGTGTCTATACTGACAA
CTATGAGAGAGGGAGAGCCATGGGAATTGCTTTGGGGGGCCTGGCTTTGGGACTTCTGGTGGGA
GCACCTTTCGGAAGTGTGATGTATGAATTTGTGGGCAAGTCCTCACCATTCCTCATCTTGGCCT
TCTTGGCACTTCTGGATGGAGCTCTCCAACTTTGCATCCTGTGGCCTTCGAAAGTGTCTCCTGA
GAGTGCCATGGGGACTCCGCTTTTGACGCTTCTCAAAGACCCTTACATCCTGGTAGCAGCAGGT
TCCATCTGCTTGGCCAACATGGGTGTCGCCATACTAGAGCCCACGCTGCCCATCTGGATGATGC
AGACCATGTGCTCCCCCGAGTGGCAGCTAGGTCTGGCTTTCTTGCCTGCTAGTGTGGCCTACCT
CATTGGCACGAACCTCTTTGGTGTGTTGGCTAACAAGATGGGTCGGTGGCTGTGCTCCCTTGTT
GGGATGGTGGCAGTAGGTATCAGCTTGCTCTGTGTACCTCTGGCTCACAATATTTTTGGTCTTA
TTGGCCCCAATGCAGGCCTTGGCTTTGCCATAGGAATGGTGGATTCCTCTCTGATGCCCATCAT
GGGATACCTGGTGGACTTACGCCACACCTCTGTGTATGGGAGTGTCTATGCCATCGCCGATGTG
GCCTTTTGTGTGGGCTTTGCTATTGGCCCATCTACTGGGGGTGTTATCGTACAGGTCATTGGCT
TTCCTTGGCTCATGGTCATCATTGGTACCATCAACATCATTTATGCTCCTCTCTGCTGCTTCCT
GCAGAACCCGCCAGCTAAGGAGGAGAAGCGTGCAATTCTGAGCCAGGAATGCCCCACAGAGACC
CAGATGTACACAGTCCAGAAGCCCACAAAGGAGTTTCCACTAGGAGAGAACAGCGATGATCCTA
GCAGCGGGGAGTAACTGCGGAGGGCGATATCTGCGCCTCACATCTACAGGGACCAGTCTACTAC
AGATTCAATAATTTTCACTTTCCTCTCCTCCAGGCCACTGCCTTCCTCCCTTCTTATTGATACC
TTTCCTTTACTCACCTGTAAGTGCAACCCACCACTCTCCCTCTGTGCTTTGACACCACCCATGG
CCCACTTTTTGTGGGAGGACAGTGCTATTTCCTGCCAGGCCAAAGCGAAGCTGATTAAAGCTGA
GTTGTGACAAGTTCTGCAAGGGGTGACTCACTTCCTGCAGGCAGGACTGAACAATGTGCCTGCG
AAATCAGGGGGACAAATGACAAGCCTGCCTTTCTTCTCTGATTGTTTTTTTTTTTTTGACATAT
TACCAATATGTCCTAAAATTTGACTTGTGTCCTGTGAAATGCTTTCCCCTTATTTTTTCCAGTT
TAGCTTCTATACATACGGGTTTTTGCTTATTTTATGTGCTAAAATTGTTTACCTTCATTAAGTG
AGGCCTTCCTACTTTCTTCATCGCCCAATTGAGAGGAAATAAACAACTTTCTTAGGCTTGA

hide sequence

RefSeq Acc Id:

XM_017600000 ⟹ XP_017455489

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	22,358,646 - 22,395,183 (+)	NCBI

Sequence:

show sequence

AGCTCTCTTAACTGCTAAGCCATCTCTCCAGCCCCATGTTAAACATTTTTAAATATACAATTCA
GTATTAAATGTATTGAATTAAATTAATTGTATATTGGTTCAACCAACTAGTCTTTAGAAGCTTT
TCATCTTGTGAAACTGAAACTCTACTAATTGAAGAAGCATTTCCCTTTTCCCTTTCCCCCATAT
CCTAGTAGACATGGAGTTTTTGTCTTTATGAATTCCATTATTTTAGGAACGTCATATGAAATCA
TAAAGAGTTTTTCCTTTGGTGAATGACATATTTTTTGTATAATACTCTCAAGATTAATCCATGA
TGGGTAAGATCTCATTGTGAGTATCACATTTGCTTGTTTATTTGTCCATCAGAAGGCATCAGGT
TGCTTTTATCTTTTGAAAAGTGTGTGCATGCCTAGAAATGTGCACACGAATTTATATCTTTGAG
CACATTAGATTGCTGCCACCGCTGAGGGCTTGAGTTAGATTCACTGGACTTACTTGTTGACTGG
TGAGTACACTGTCCAATCAGAGACTTGGTCTCAACAACATAGAAGAGGAGGGCTGACACCTAAG
ATTGTCTACTGACTTCCACCCCCACCACACACAGAGATGAAAAAAATTCATCTAGAGGAAAATA
AGCACTTATTCCTGTAATTATCTCCAGTATCTGTGAAGACTTATTTGTCCTGACTATGAACACA
AGCACTGCAACTGAAAAGTGTATTTACATGTTTTAAATATAACATATATTACATATAATGTGGC
TACATATTAGCAGTATGCTGAAAATGAGGTAGGCAGTTCACAGTGGTTGTCATTGTTGCTATTA
TTTCTGCTAAATCTAAAGAATGATCATTCTTTAGCCATACCTGCCTTCTTAAGACCTCTGTTCC
CCCAAATCATCATTTTCATATACTTTTTGGGGGACTCTGATTTTGGTGGTATTTCCAAGTTTTC
TTCAATTAGGATTGTTCTATCCTCCGCCAACCTCATATGAGTGTTCTTTACTAGACAGCTGCAT
GCTGTGGGAGATGCCCAAACACTCAGAGAATGGAAAGTGTACTTGCCAGGGAACATGGTGGCAG
AAGTGCCAACCGAACTCCCAAAGGTCTTTTGCCCAGAACTAGAAAATATATTTATTTACTGGCA
CATCTCTGTAACTTTCAGCCATAGTCCCTTTTGTCCTTAGAGACAGGTATGAAGCATGTTGGGG
AACCCACGTGCTTTGCTGCTCACACCCCATGAGAATAGGGCAATGGCACTGAGAGATGCTAGCA
TCCTAATCATGAACTTGTGACTGTTTCTCTGCATGCTGCAAACATGTTGCAGGGAATCTTGTTT
TAAGGTCCCGGAGTCCAGACCTTGAACTATTTGGGTGTACTCAGTATAACCACAAGGGTTCTTG
CAAGTGAAGGACAGGGAGAGTTTGACATGTGCCACTGGCTTTGCAGGTCAAAGCTCAGAGCCAA
GATCTGTAGGTGGCCTCTTGAATGGAATTGTCCCCGGTGTTGGGAACAAGCAAAAGAAATTTAT
TCTAAGTTCTACTATTTTGTTTTCAGACTCCATTTAATCACAGGGAGAAATTAAATTCAAGGTC
TTAGGCTCTAGGGGAGCTTCTCAATAGTTGAACAACTTCTCTTGTAAGGGAAAAAGTAATCTGA
GTTCAGACATCTCAAGGACAACTTCTCCATCTTGCTAGCACAGTCAAACCAGTTCATGTTCCCA
GGCCCAGAGAACAACTCCTATCCTGACGGATGGAAATTCCCTCGCTCAACCCTTTATGTCAAAA
TATGATTGGAAAATGCTATAACCCCCACCCCCTAGCTCTATGGTTTTGTCCTGTAAATATGCTG
TACAACGTCCCTTCAGGGTCATAGTTCTTGAGTCTATTCTTTAGCCCTGATCAATCAGTAGCGG
CTTGATTACAATACATTTCTGTCATCTTCATTGGCCTGGTATTTTGAGTTATGTTGGATGCCTA
TTGGATTTACGTGGACCTACAACACCCAGAGTCCCTGAATGAACAAATCCCTGTTATACCCTCG
TTTTAACCCAGGCACCGCTGTGTGCACTTCTGACCTGTACAACAGAACTGTACAACAGCAAAGT
GTGCTGTTTTGTGCTACTAAATTCAAAGTGCCCACAGGAATGACACATTTCCTTAGTGACTTTA
TCCTCTTCCTCTAGGTTTATATTTTCAAGCTCTTTCTTCCTTTTATTTTAACCCTAAATCAATC
CTCATAGCTAATTCACATAATTAGGATAGCTCATCATAGAAGACTTCTGTTACTCTTGTCCTTC
TTGTTACTCTATCTTATTTGGTCTTTTGTAAACTTTACATTCAGTGCCCCACTGACGAGGCATC
ATGCATTACAGACCTATGGTGCTTCTGAGTATCCCTCAATGAGGTGCTGCCTTCCTGTAGCCAT
CTATCTGGTCATCCTATAATAAAGATTTACATAATAAAGAGGCTGTTGTGCCCAGCACTGAGGC
AGGATTAGGAAGAAGGGACACAGTGAAATGTCTGTGCCTATATGTAGGTCACAGATGTTTGATT
TGTGTACATTTATGTGTACTTCTACATGTTCATGTGCAAATGCAGGTGTGGGTACAGATTCAAA
TGCACATGTGTGCACATGTGTGCAGAAGCCAGAGGTCAGTGTAGGGTGTCTTCCTCAATTTGTC
TCCATATTTTTTGAGACAGCCTCTTACTAAACCTAGAGCTTGGTGCTTCAGCTACACTGGCTGG
CCAGAAAGTCCCAGGAAACCTGTTTCCATCCTTCTATGCTGTGATTACAGGCTTGCACTGTCAC
TTTTTTTTTTTTTGGTACTAAGAATCAAACTTGGGGCTTCATACAATGTGTGGGACACTTTACC
AGCTGTGTCCCTAGCCCTGGATATTTGGTTTTATGGCTAGAGAACAGTAAGCTCTTATTTTTTT
CTTCATATAAATGTTTCACAGTTTATTATTTTAAGGAAAGAATTGGAGCACAAGAGGCATCTTT
AAGTAGCAAAGGGAAGGAAATGCACCCTGGTTCTATCTTGCATTCTGGTTTGCATCCAGATCTA
GGCAAGAGTTAAAAGAGTAATGCCATAGATAAGCACAGATGAAAACCAGAACAGCCTAGTGCCT
CTTTGCTTAGGAAAAATACACTTCCTCTGTCCTCCCCAGCCCTGGCCCTGTCTGCCTTTGACGC
AGAGAGCTAAGGGTCTAAAGGAAACCTGTTGGAGGTTCCAATTAAGTCTTTGTGGACATAGGGC
GCGTGCGATTGCAAACACACACACACACACACACACACACACACACACACACACACACACACAC
AGATAACAGGCAGCAATAAATCCATCAGCACATCCACTTTCAGAGAACAGAGTCTCTGCTGTCT
TGCCAACGGCTGCTCCTTCCTCTCTGAGTGCCTCACATCAAGATAAGCTAGAAGTGAGCTTCAC
TGGACCAGGCAGACTTCTTCTCCTATAAAGGTGACAGAAGACCACATTTGTCAAGGGGTCTTCC
TAAGCCCTGGGAGGAGAAGCCCCCACCATCTCACTCCCTACCCAGCCCAGCCTCCTGCAGCCCT
TGCCATGCTCCAGGTTGTTCTGGGTGCTCCTCAGCGGTTGCTGAAGGAAGGAAGGCAGTCCCGC
AAGCTGGTGCTGGTGGTGGTGTTCGTGGCTCTGCTTCTGGACAACATGCTGCTCACTGTGGTGG
TGCCCATTGTGCCCACCTTCCTGTACGCGACAGAGTTCAAAGACAGCAACTCTTCTCTGCATAG
GGGTCCTTCTGTAAGCTCCCAGCAAGCTCTCACCTCTCCTGCCTTCTCTACCATATTCTCCTTC
TTTGACAACACCACCACAACTGTAGAAGAACATGTACCCTTCCGTGTAACTTGGACAAATGGCA
CCATCCCTCCTCCAGTCACTGAAGCCACCTCAGTACCAAAAAACAACTGCTTGCAAGGGATAGA
GTTCTTAGAAGAAGAAAACGTTCGGATTGGGATTCTATTTGCTTCAAAAGCTTTGATGCAACTT
CTGGTCAACCCATTTGTAGGACCTCTTACTAACAGGATTGGCTATCACATCCCCATGTTTGTTG
GCTTTATGATCATGTTTCTCTCCACACTAATGTTTGCTTTCTCTGGCACCTATGCCCTGCTATT
TGTGGCCCGAACTCTCCAAGGCATTGGATCTTCGTTTTCATCTGTTGCAGGACTTGGGATGCTG
GCCAGTGTCTATACTGACAACTATGAGAGAGGGAGAGCCATGGGAATTGCTTTGGGGGGCCTGG
CTTTGGGACTTCTGGTGGGAGCACCTTTCGGAAGTGTGATGTATGAATTTGTGGGCAAGTCCTC
ACCATTCCTCATCTTGGCCTTCTTGGCACTTCTGGATGGAGCTCTCCAACTTTGCATCCTGTGG
CCTTCGAAAGTGTCTCCTGAGAGTGCCATGGGGACTCCGCTTTTGACGCTTCTCAAAGACCCTT
ACATCCTGGTAGCAGCAGGTCTGGCTTTCTTGCCTGCTAGTGTGGCCTACCTCATTGGCACGAA
CCTCTTTGGTGTGTTGGCTAACAAGATGGGTCGGTGGCTGTGCTCCCTTGTTGGGATGGTGGCA
GTAGGTATCAGCTTGCTCTGTGTACCTCTGGCTCACAATATTTTTGGTCTTATTGGCCCCAATG
CAGGCCTTGGCTTTGCCATAGGAATGGTGGATTCCTCTCTGATGCCCATCATGGGATACCTGGT
GGACTTACGCCACACCTCTGTGTATGGGAGTGTCTATGCCATCGCCGATGTGGCCTTTTGTGTG
GGCTTTGCTATTGGCCCATCTACTGGGGGTGTTATCGTACAGGTCATTGGCTTTCCTTGGCTCA
TGGTCATCATTGGTACCATCAACATCATTTATGCTCCTCTCTGCTGCTTCCTGCAGAACCCGCC
AGCTAAGGAGGAGAAGCGTGCAATTCTGAGCCAGGAATGCCCCACAGAGACCCAGATGTACACA
GTCCAGAAGCCCACAAAGGAGTTTCCACTAGGAGAGAACAGCGATGATCCTAGCAGCGGGGAGT
AACTGCGGAGGGCGATATCTGCGCCTCACATCTACAGGGACCAGTCTACTACAGATTCAATAAT
TTTCACTTTCCTCTCCTCCAGGCCACTGCCTTCCTCCCTTCTTATTGATACCTTTCCTTTACTC
ACCTGTAAGTGCAACCCACCACTCTCCCTCTGTGCTTTGACACCACCCATGGCCCACTTTTTGT
GGGAGGACAGTGCTATTTCCTGCCAGGCCAAAGCGAAGCTGATTAAAGCTGAGTTGTGACAAGT
TCTGCAAGGGGTGACTCACTTCCTGCAGGCAGGACTGAACAATGTGCCTGCGAAATCAGGGGGA
CAAATGACAAGCCTGCCTTTCTTCTCTGATTGTTTTTTTTTTTTTGACATATTACCAATATGTC
CTAAAATTTGACTTGTGTCCTGTGAAATGCTTTCCCCTTATTTTTTCCAGTTTAGCTTCTATAC
ATACGGGTTTTTGCTTATTTTATGTGCTAAAATTGTTTACCTTCATTAAGTGAGGCCTTCCTAC
TTTCTTCATCGCCCAATTGAGAGGAAATAAACAACTTTCTTAGGCTTGA

hide sequence

RefSeq Acc Id:

XM_017600001 ⟹ XP_017455490

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	22,358,646 - 22,395,183 (+)	NCBI

Sequence:

show sequence

AGCTCTCTTAACTGCTAAGCCATCTCTCCAGCCCCATGTTAAACATTTTTAAATATACAATTCA
GTATTAAATGTATTGAATTAAATTAATTGTATATTGGTTCAACCAACTAGTCTTTAGAAGCTTT
TCATCTTGTGAAACTGAAACTCTACTAATTGAAGAAGCATTTCCCTTTTCCCTTTCCCCCATAT
CCTAGTAGACATGGAGTTTTTGTCTTTATGAATTCCATTATTTTAGGAACGTCATATGAAATCA
TAAAGAGTTTTTCCTTTGGTGAATGACATATTTTTTGTATAATACTCTCAAGATTAATCCATGA
TGGGTAAGATCTCATTGTGAGTATCACATTTGCTTGTTTATTTGTCCATCAGAAGGCATCAGGT
TGCTTTTATCTTTTGAAAAGTGTGTGCATGCCTAGAAATGTGCACACGAATTTATATCTTTGAG
CACATTAGATTGCTGCCACCGCTGAGGGCTTGAGTTAGATTCACTGGACTTACTTGTTGACTGG
TGAGTACACTGTCCAATCAGAGACTTGGTCTCAACAACATAGAAGAGGAGGGCTGACACCTAAG
ATTGTCTACTGACTTCCACCCCCACCACACACAGAGATGAAAAAAATTCATCTAGAGGAAAATA
AGCACTTATTCCTGTAATTATCTCCAGTATCTGTGAAGACTTATTTGTCCTGACTATGAACACA
AGCACTGCAACTGAAAAGTGTATTTACATGTTTTAAATATAACATATATTACATATAATGTGGC
TACATATTAGCAGTATGCTGAAAATGAGGTAGGCAGTTCACAGTGGTTGTCATTGTTGCTATTA
TTTCTGCTAAATCTAAAGAATGATCATTCTTTAGCCATACCTGCCTTCTTAAGACCTCTGTTCC
CCCAAATCATCATTTTCATATACTTTTTGGGGGACTCTGATTTTGGTGGTATTTCCAAGTTTTC
TTCAATTAGGATTGTTCTATCCTCCGCCAACCTCATATGAGTGTTCTTTACTAGACAGCTGCAT
GCTGTGGGAGATGCCCAAACACTCAGAGAATGGAAAGTGTACTTGCCAGGGAACATGGTGGCAG
AAGTGCCAACCGAACTCCCAAAGGTCTTTTGCCCAGAACTAGAAAATATATTTATTTACTGGCA
CATCTCTGTAACTTTCAGCCATAGTCCCTTTTGTCCTTAGAGACAGGTATGAAGCATGTTGGGG
AACCCACGTGCTTTGCTGCTCACACCCCATGAGAATAGGGCAATGGCACTGAGAGATGCTAGCA
TCCTAATCATGAACTTGTGACTGTTTCTCTGCATGCTGCAAACATGTTGCAGGGAATCTTGTTT
TAAGGTCCCGGAGTCCAGACCTTGAACTATTTGGGTGTACTCAGTATAACCACAAGGGTTCTTG
CAAGTGAAGGACAGGGAGAGTTTGACATGTGCCACTGGCTTTGCAGGTCAAAGCTCAGAGCCAA
GATCTGTAGGTGGCCTCTTGAATGGAATTGTCCCCGGTGTTGGGAACAAGCAAAAGAAATTTAT
TCTAAGTTCTACTATTTTGTTTTCAGACTCCATTTAATCACAGGGAGAAATTAAATTCAAGGTC
TTAGGCTCTAGGGGAGCTTCTCAATAGTTGAACAACTTCTCTTGTAAGGGAAAAAGTAATCTGA
GTTCAGACATCTCAAGGACAACTTCTCCATCTTGCTAGCACAGTCAAACCAGTTCATGTTCCCA
GGCCCAGAGAACAACTCCTATCCTGACGGATGGAAATTCCCTCGCTCAACCCTTTATGTCAAAA
TATGATTGGAAAATGCTATAACCCCCACCCCCTAGCTCTATGGTTTTGTCCTGTAAATATGCTG
TACAACGTCCCTTCAGGGTCATAGTTCTTGAGTCTATTCTTTAGCCCTGATCAATCAGTAGCGG
CTTGATTACAATACATTTCTGTCATCTTCATTGGCCTGGTATTTTGAGTTATGTTGGATGCCTA
TTGGATTTACGTGGACCTACAACACCCAGAGTCCCTGAATGAACAAATCCCTGTTATACCCTCG
TTTTAACCCAGGCACCGCTGTGTGCACTTCTGACCTGTACAACAGAACTGTACAACAGCAAAGT
GTGCTGTTTTGTGCTACTAAATTCAAAGTGCCCACAGGAATGACACATTTCCTTAGTGACTTTA
TCCTCTTCCTCTAGGTTTATATTTTCAAGCTCTTTCTTCCTTTTATTTTAACCCTAAATCAATC
CTCATAGCTAATTCACATAATTAGGATAGCTCATCATAGAAGACTTCTGTTACTCTTGTCCTTC
TTGTTACTCTATCTTATTTGGTCTTTTGTAAACTTTACATTCAGTGCCCCACTGACGAGGCATC
ATGCATTACAGACCTATGGTGCTTCTGAGTATCCCTCAATGAGGTGCTGCCTTCCTGTAGCCAT
CTATCTGGTCATCCTATAATAAAGATTTACATAATAAAGAGGCTGTTGTGCCCAGCACTGAGGC
AGGATTAGGAAGAAGGGACACAGTGAAATGTCTGTGCCTATATGTAGGTCACAGATGTTTGATT
TGTGTACATTTATGTGTACTTCTACATGTTCATGTGCAAATGCAGGTGTGGGTACAGATTCAAA
TGCACATGTGTGCACATGTGTGCAGAAGCCAGAGGTCAGTGTAGGGTGTCTTCCTCAATTTGTC
TCCATATTTTTTGAGACAGCCTCTTACTAAACCTAGAGCTTGGTGCTTCAGCTACACTGGCTGG
CCAGAAAGTCCCAGGAAACCTGTTTCCATCCTTCTATGCTGTGATTACAGGCTTGCACTGTCAC
TTTTTTTTTTTTTGGTACTAAGAATCAAACTTGGGGCTTCATACAATGTGTGGGACACTTTACC
AGCTGTGTCCCTAGCCCTGGATATTTGGTTTTATGGCTAGAGAACAGTAAGCTCTTATTTTTTT
CTTCATATAAATGTTTCACAGTTTATTATTTTAAGGAAAGAATTGGAGCACAAGAGGCATCTTT
AAGTAGCAAAGGGAAGGAAATGCACCCTGGTTCTATCTTGCATTCTGGTTTGCATCCAGATCTA
GGCAAGAGTTAAAAGAGTAATGCCATAGATAAGCACAGATGAAAACCAGAACAGCCTAGTGCCT
CTTTGCTTAGGAAAAATACACTTCCTCTGTCCTCCCCAGCCCTGGCCCTGTCTGCCTTTGACGC
AGAGAGCTAAGGGTCTAAAGGAAACCTGTTGGAGGTTCCAATTAAGTCTTTGTGGACATAGGGC
GCGTGCGATTGCAAACACACACACACACACACACACACACACACACACACACACACACACACAC
AGATAACAGGCAGCAATAAATCCATCAGCACATCCACTTTCAGAGAACAGAGTCTCTGCTGTCT
TGCCAACGGCTGCTCCTTCCTCTCTGAGTGCCTCACATCAAGATAAGCTAGAAGTGAGCTTCAC
TGGACCAGGCAGACTTCTTCTCCTATAAAGGTGACAGAAGACCACATTTGTCAAGGGGTCTTCC
TAAGCCCTGGGAGGAGAAGCCCCCACCATCTCACTCCCTACCCAGCCCAGCCTCCTGCAGCCCT
TGCCATGCTCCAGGTTGTTCTGGGTGCTCCTCAGCGGTTGCTGAAGGAAGGAAGGCAGTCCCGC
AAGCTGGTGCTGGTGGTGGTGTTCGTGGCTCTGCTTCTGGACAACATGCTGCTCACTGTGGTGG
TGTTTGCTTTCTCTGGCACCTATGCCCTGCTATTTGTGGCCCGAACTCTCCAAGGCATTGGATC
TTCGTTTTCATCTGTTGCAGGACTTGGGATGCTGGCCAGTGTCTATACTGACAACTATGAGAGA
GGGAGAGCCATGGGAATTGCTTTGGGGGGCCTGGCTTTGGGACTTCTGGTGGGAGCACCTTTCG
GAAGTGTGATGTATGAATTTGTGGGCAAGTCCTCACCATTCCTCATCTTGGCCTTCTTGGCACT
TCTGGATGGAGCTCTCCAACTTTGCATCCTGTGGCCTTCGAAAGTGTCTCCTGAGAGTGCCATG
GGGACTCCGCTTTTGACGCTTCTCAAAGACCCTTACATCCTGGTAGCAGCAGGTTCCATCTGCT
TGGCCAACATGGGTGTCGCCATACTAGAGCCCACGCTGCCCATCTGGATGATGCAGACCATGTG
CTCCCCCGAGTGGCAGCTAGGTCTGGCTTTCTTGCCTGCTAGTGTGGCCTACCTCATTGGCACG
AACCTCTTTGGTGTGTTGGCTAACAAGATGGGTCGGTGGCTGTGCTCCCTTGTTGGGATGGTGG
CAGTAGGTATCAGCTTGCTCTGTGTACCTCTGGCTCACAATATTTTTGGTCTTATTGGCCCCAA
TGCAGGCCTTGGCTTTGCCATAGGAATGGTGGATTCCTCTCTGATGCCCATCATGGGATACCTG
GTGGACTTACGCCACACCTCTGTGTATGGGAGTGTCTATGCCATCGCCGATGTGGCCTTTTGTG
TGGGCTTTGCTATTGGCCCATCTACTGGGGGTGTTATCGTACAGGTCATTGGCTTTCCTTGGCT
CATGGTCATCATTGGTACCATCAACATCATTTATGCTCCTCTCTGCTGCTTCCTGCAGAACCCG
CCAGCTAAGGAGGAGAAGCGTGCAATTCTGAGCCAGGAATGCCCCACAGAGACCCAGATGTACA
CAGTCCAGAAGCCCACAAAGGAGTTTCCACTAGGAGAGAACAGCGATGATCCTAGCAGCGGGGA
GTAACTGCGGAGGGCGATATCTGCGCCTCACATCTACAGGGACCAGTCTACTACAGATTCAATA
ATTTTCACTTTCCTCTCCTCCAGGCCACTGCCTTCCTCCCTTCTTATTGATACCTTTCCTTTAC
TCACCTGTAAGTGCAACCCACCACTCTCCCTCTGTGCTTTGACACCACCCATGGCCCACTTTTT
GTGGGAGGACAGTGCTATTTCCTGCCAGGCCAAAGCGAAGCTGATTAAAGCTGAGTTGTGACAA
GTTCTGCAAGGGGTGACTCACTTCCTGCAGGCAGGACTGAACAATGTGCCTGCGAAATCAGGGG
GACAAATGACAAGCCTGCCTTTCTTCTCTGATTGTTTTTTTTTTTTTGACATATTACCAATATG
TCCTAAAATTTGACTTGTGTCCTGTGAAATGCTTTCCCCTTATTTTTTCCAGTTTAGCTTCTAT
ACATACGGGTTTTTGCTTATTTTATGTGCTAAAATTGTTTACCTTCATTAAGTGAGGCCTTCCT
ACTTTCTTCATCGCCCAATTGAGAGGAAATAAACAACTTTCTTAGGCTTGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_037284	(Get FASTA)	NCBI Sequence Viewer
	XP_006253055	(Get FASTA)	NCBI Sequence Viewer
	XP_017455489	(Get FASTA)	NCBI Sequence Viewer
	XP_017455490	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA40921	(Get FASTA)	NCBI Sequence Viewer
	AAN75456	(Get FASTA)	NCBI Sequence Viewer
	Q01818	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_037284 ⟸ NM_013152

- UniProtKB:

Q01818 (UniProtKB/Swiss-Prot), F1LSA7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLQVVLGAPQRLLKEGRQSRKLVLVVVFVALLLDNMLLTVVVPIVPTFLYATEFKDSNSSLHRG
PSVSSQQALTSPAFSTIFSFFDNTTTTVEEHVPFRVTWTNGTIPPPVTEATSVPKNNCLQGIEF
LEEENVRIGILFASKALMQLLVNPFVGPLTNRIGYHIPMFVGFMIMFLSTLMFAFSGTYALLFV
ARTLQGIGSSFSSVAGLGMLASVYTDNYERGRAMGIALGGLALGLLVGAPFGSVMYEFVGKSSP
FLILAFLALLDGALQLCILWPSKVSPESAMGTPLLTLLKDPYILVAAGSICLANMGVAILEPTL
PIWMMQTMCSPEWQLGLAFLPASVAYLIGTNLFGVLANKMGRWLCSLVGMVAVGISLLCVPLAH
NIFGLIGPNAGLGFAIGMVDSSLMPIMGYLVDLRHTSVYGSVYAIADVAFCVGFAIGPSTGGVI
VQVIGFPWLMVIIGTINIIYAPLCCFLQNPPAKEEKRAILSQECPTETQMYTVQKPTKEFPLGE
NSDDPSSGE

hide sequence

RefSeq Acc Id:

XP_006253055 ⟸ XM_006252993

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNKEAQKIQTLVLFVTLHTFLLNSELHWTRQTSSPIKVTEDHICQGVFLSPGRRSPHHLTPYPA
QPPAALAMLQVVLGAPQRLLKEGRQSRKLVLVVVFVALLLDNMLLTVVVPIVPTFLYATEFKDS
NSSLHRGPSVSSQQALTSPAFSTIFSFFDNTTTTVEEHVPFRVTWTNGTIPPPVTEATSVPKNN
CLQGIEFLEEENVRIGILFASKALMQLLVNPFVGPLTNRIGYHIPMFVGFMIMFLSTLMFAFSG
TYALLFVARTLQGIGSSFSSVAGLGMLASVYTDNYERGRAMGIALGGLALGLLVGAPFGSVMYE
FVGKSSPFLILAFLALLDGALQLCILWPSKVSPESAMGTPLLTLLKDPYILVAAGSICLANMGV
AILEPTLPIWMMQTMCSPEWQLGLAFLPASVAYLIGTNLFGVLANKMGRWLCSLVGMVAVGISL
LCVPLAHNIFGLIGPNAGLGFAIGMVDSSLMPIMGYLVDLRHTSVYGSVYAIADVAFCVGFAIG
PSTGGVIVQVIGFPWLMVIIGTINIIYAPLCCFLQNPPAKEEKRAILSQECPTETQMYTVQKPT
KEFPLGENSDDPSSGE

hide sequence

RefSeq Acc Id:

XP_017455489 ⟸ XM_017600000

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLQVVLGAPQRLLKEGRQSRKLVLVVVFVALLLDNMLLTVVVPIVPTFLYATEFKDSNSSLHRG
PSVSSQQALTSPAFSTIFSFFDNTTTTVEEHVPFRVTWTNGTIPPPVTEATSVPKNNCLQGIEF
LEEENVRIGILFASKALMQLLVNPFVGPLTNRIGYHIPMFVGFMIMFLSTLMFAFSGTYALLFV
ARTLQGIGSSFSSVAGLGMLASVYTDNYERGRAMGIALGGLALGLLVGAPFGSVMYEFVGKSSP
FLILAFLALLDGALQLCILWPSKVSPESAMGTPLLTLLKDPYILVAAGLAFLPASVAYLIGTNL
FGVLANKMGRWLCSLVGMVAVGISLLCVPLAHNIFGLIGPNAGLGFAIGMVDSSLMPIMGYLVD
LRHTSVYGSVYAIADVAFCVGFAIGPSTGGVIVQVIGFPWLMVIIGTINIIYAPLCCFLQNPPA
KEEKRAILSQECPTETQMYTVQKPTKEFPLGENSDDPSSGE

hide sequence

RefSeq Acc Id:

XP_017455490 ⟸ XM_017600001

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLQVVLGAPQRLLKEGRQSRKLVLVVVFVALLLDNMLLTVVVFAFSGTYALLFVARTLQGIGSS
FSSVAGLGMLASVYTDNYERGRAMGIALGGLALGLLVGAPFGSVMYEFVGKSSPFLILAFLALL
DGALQLCILWPSKVSPESAMGTPLLTLLKDPYILVAAGSICLANMGVAILEPTLPIWMMQTMCS
PEWQLGLAFLPASVAYLIGTNLFGVLANKMGRWLCSLVGMVAVGISLLCVPLAHNIFGLIGPNA
GLGFAIGMVDSSLMPIMGYLVDLRHTSVYGSVYAIADVAFCVGFAIGPSTGGVIVQVIGFPWLM
VIIGTINIIYAPLCCFLQNPPAKEEKRAILSQECPTETQMYTVQKPTKEFPLGENSDDPSSGE

hide sequence

RefSeq Acc Id:

ENSRNOP00000016193 ⟸ ENSRNOT00000016193

Protein Domains

MFS

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
16	22275685	22275686	C	T	snv	GH/OmrMcwi (MCW), SBH/Ygl (MCW), HWY/Slc (KyushuU), IS-Tlk/Kyo (KyushuU), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), MHS/Gib (KNAW), SBH/Ygl (KNAW), FHH/EurMcwi (KNAW), FHL/EurMcwi (KNAW), LE/OrlBarth (UDEL), Crl:SD (UDEL), IS/Kyo (KyushuU), NIG-III/Hok (KyushuU), HTX/Kyo (KyushuU)
16	22285439	22285440	G	T	snv	BBDP/WorN (KNAW), BUF/MNa (KyushuU), ZFDM (KyushuU)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
16	22381164	22381165	C	T	snv	GH/OmrMcwi (MCW), SBH/Ygl (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (RGD), FHL/EurMcwi (RGD), FHH/EurMcwi (RGD), MHS/Gib (RGD)
16	22390918	22390919	G	T	snv	BBDP/Wor (RGD)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
16	22375466	22375467	C	T	snv	FHH/EurMcwi (MDC), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (ICL), FHH/EurMcwi (ICL), FHL/EurMcwi (ICL), MHS/Gib (ICL)
16	22385562	22385563	G	T	snv	BBDP/WorN (ICL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3693	AgrOrtholog
Ensembl Genes	ENSRNOG00000011992	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000016193	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016193	ENTREZGENE, UniProtKB/TrEMBL
InterPro	MFS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MFS_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MFS_trans_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Multidrug-R	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:25693	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	25693	ENTREZGENE
Pfam	MFS_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc18a1	PhenoGen
PROSITE	MFS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF103473	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR	TC216694
TIGRFAMs	2_A_01_02	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene	Rn.89261	ENTREZGENE
UniProt	F1LSA7	ENTREZGENE, UniProtKB/TrEMBL
	Q01818	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-01	Slc18a1	solute carrier family 18 member A1	Slc18a1	solute carrier family 18 member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-25	Slc18a1	solute carrier family 18 member 1	Slc18a1	solute carrier family 18 (vesicular monoamine transporter), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc18a1	solute carrier family 18 (vesicular monoamine transporter), member 1	Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-04-12	Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	LOC684870	similar to solute carrier family 18 (vesicular monoamine), member 1	Data Merged	737654	PROVISIONAL
2006-11-19	LOC684870	similar to solute carrier family 18 (vesicular monoamine), member 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2004-09-10	Slc18a1	solute carrier family 18 (vesicular monoamine), member 1		solute carrier family 18, member 1	Name updated	1299863	APPROVED
2003-04-09	Slc18a1	solute carrier family 18, member 1		Solute carrier family18 (vesicular monoamine) member 1 (chromaffin granule amine transporter)	Name updated	629478	APPROVED
2002-06-10	Slc18a1	Solute carrier family18 (vesicular monoamine) member 1 (chromaffin granule amine transporter)			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed exclusively in adrenal gland	729674

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - KEGG (archival)