Symbol:
LOC101699044 (Ensembl: CYP26A1)
Name:
cytochrome P450 26A1
RGD ID:
18936661
Description:
ENCODES a protein that exhibits all-trans retinoic acid 18-hydroxylase activity (inferred); heme binding (inferred); iron ion binding (inferred); INVOLVED IN anterior/posterior pattern specification (ortholog); cellular response to retinoic acid (ortholog); central nervous system development (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH actinic keratosis (ortholog); adenocarcinoma (ortholog); Barrett's adenocarcinoma (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); intracellular membrane-bounded organelle (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Annotations - SMPDB
LOC101699044
CYP26A1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 10 93,073,475 - 93,077,885 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 10 93,073,475 - 93,077,885 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 10 94,833,232 - 94,837,642 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 10 94,823,222 - 94,827,631 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 10 94,823,221 - 94,827,631 NCBI Celera 10 88,574,439 - 88,578,848 (+) NCBI Celera Cytogenetic Map 10 q23.33 NCBI HuRef 10 88,460,761 - 88,465,170 (+) NCBI HuRef CHM1_1 10 95,115,931 - 95,120,340 (+) NCBI CHM1_1 T2T-CHM13v2.0 10 93,953,370 - 93,957,780 (+) NCBI T2T-CHM13v2.0
Cyp26a1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 19 37,686,186 - 37,689,984 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 19 37,686,246 - 37,689,984 (+) Ensembl GRCm39 Ensembl GRCm38 19 37,697,738 - 37,701,536 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 19 37,697,798 - 37,701,536 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 19 37,772,298 - 37,776,026 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 19 37,762,998 - 37,766,680 (+) NCBI MGSCv36 mm8 Celera 19 38,484,789 - 38,488,516 (+) NCBI Celera Cytogenetic Map 19 C2 NCBI cM Map 19 32.36 NCBI
Cyp26a1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 244,883,822 - 244,887,657 (+) NCBI GRCr8 mRatBN7.2 1 235,471,368 - 235,475,204 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 235,471,298 - 235,475,204 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 1 243,856,469 - 243,860,304 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 1 250,788,639 - 250,792,474 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 1 243,626,842 - 243,630,677 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 1 256,382,861 - 256,386,729 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 256,382,791 - 256,386,729 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 263,865,285 - 263,869,103 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 1 241,945,472 - 241,949,220 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 1 242,135,064 - 242,138,791 (-) NCBI Celera 1 232,563,995 - 232,567,749 (+) NCBI Celera Cytogenetic Map 1 q53 NCBI
CYP26A1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 8 105,109,727 - 105,113,815 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 10 105,101,325 - 105,119,130 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 10 89,817,623 - 89,822,024 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 10 93,330,460 - 93,334,105 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 10 93,330,460 - 93,334,105 (+) Ensembl panpan1.1 panPan2
CYP26A1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 28 7,423,955 - 7,432,359 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 28 7,428,772 - 7,432,370 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 28 7,605,185 - 7,608,930 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 28 7,688,620 - 7,692,365 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 28 7,688,780 - 7,692,376 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 28 7,408,839 - 7,412,573 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 28 7,446,115 - 7,449,848 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 28 7,607,985 - 7,611,730 (+) NCBI UU_Cfam_GSD_1.0
LOC101977861 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024407213 40,177,867 - 40,181,785 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936601 1,809,992 - 1,814,074 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936601 1,810,572 - 1,815,927 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
CYP26A1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 14 104,563,195 - 104,567,095 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 14 104,561,394 - 104,567,099 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 14 114,201,978 - 114,205,507 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
LOC103216270 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 9 86,310,142 - 86,328,622 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 9 86,325,401 - 86,328,775 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666048 47,091,899 - 47,095,645 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSHGLT00000022565 ⟹ ENSHGLP00000022354
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624737 4,325,755 - 4,329,758 (+) Ensembl
RefSeq Acc Id:
XM_004838516 ⟹ XP_004838573
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624737 4,325,523 - 4,329,488 (+) NCBI
RefSeq Acc Id:
XM_004838517 ⟹ XP_004838574
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624737 4,325,523 - 4,329,488 (+) NCBI
RefSeq Acc Id:
XM_021253052 ⟹ XP_021108711
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624737 4,324,964 - 4,329,488 (+) NCBI
RefSeq Acc Id:
XP_021108711 ⟸ XM_021253052
- Peptide Label:
isoform X3
- UniProtKB:
A0AAX6SJH2 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_004838573 ⟸ XM_004838516
- Peptide Label:
isoform X1
- UniProtKB:
G5B8B2 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_004838574 ⟸ XM_004838517
- Peptide Label:
isoform X2
- UniProtKB:
A0AAX6NWK2 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSHGLP00000022354 ⟸ ENSHGLT00000022565
