Chka (choline kinase alpha) - Rat Genome Database

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Gene: Chka (choline kinase alpha) Heterocephalus glaber
Analyze
Symbol: Chka
Name: choline kinase alpha
RGD ID: 18936402
Description: ENCODES a protein that exhibits ATP binding (ortholog); choline binding (ortholog); choline kinase activity (ortholog); INVOLVED IN cellular response to glucose starvation (ortholog); choline metabolic process (ortholog); ethanolamine metabolic process (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); colon adenoma (ortholog); colon cancer (ortholog); FOUND IN cytosol (ortholog); lipid droplet (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476718,744,547 - 18,807,352 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476718,744,647 - 18,807,352 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
lipid droplet  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Chka
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476718,744,547 - 18,807,352 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476718,744,647 - 18,807,352 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CHKA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381168,052,859 - 68,121,388 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1168,052,859 - 68,121,444 (-)EnsemblGRCh38hg38GRCh38
GRCh371167,820,326 - 67,888,855 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,576,902 - 67,645,434 (-)NCBINCBI36Build 36hg18NCBI36
Celera1165,154,000 - 65,222,386 (-)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1164,155,675 - 64,231,363 (-)NCBIHuRef
CHM1_11167,704,080 - 67,773,223 (-)NCBICHM1_1
T2T-CHM13v2.01168,056,500 - 68,125,033 (-)NCBIT2T-CHM13v2.0
Chka
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,901,585 - 3,944,368 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,901,773 - 3,944,369 (+)EnsemblGRCm39 Ensembl
GRCm38193,851,585 - 3,894,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,851,773 - 3,894,369 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,851,773 - 3,894,367 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,851,773 - 3,894,369 (+)NCBIMGSCv36mm8
Celera193,732,122 - 3,774,742 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.57NCBI
Chka
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,506,069 - 210,554,753 (+)NCBIGRCr8
mRatBN7.21201,076,804 - 201,125,517 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1201,076,860 - 201,125,516 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1209,450,243 - 209,498,722 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,538,854 - 216,587,504 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01209,213,056 - 209,261,706 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,076,618 - 219,126,221 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,077,771 - 219,126,220 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,950,340 - 225,998,826 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41206,368,963 - 206,418,526 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11206,522,415 - 206,571,978 (+)NCBI
Celera1198,630,045 - 198,678,068 (+)NCBICelera
Cytogenetic Map1q43NCBI
Chka
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542217,710,434 - 17,766,256 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542217,710,981 - 17,766,256 (+)NCBIChiLan1.0ChiLan1.0
CHKA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2969,003,455 - 69,071,569 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11170,046,717 - 70,114,782 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01163,134,776 - 63,202,516 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11166,443,275 - 66,486,517 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1166,444,406 - 66,510,221 (-)Ensemblpanpan1.1panPan2
CHKA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11849,717,512 - 49,784,653 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1849,745,437 - 49,781,882 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1848,326,328 - 48,395,961 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01850,633,890 - 50,707,854 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1850,633,254 - 50,704,171 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11849,851,764 - 49,917,733 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01849,426,624 - 49,492,553 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01850,219,763 - 50,289,786 (+)NCBIUU_Cfam_GSD_1.0
Chka
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,589,711 - 5,626,074 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365992,001,673 - 2,067,399 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365992,031,953 - 2,068,423 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHKA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl24,788,213 - 4,846,665 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.124,788,508 - 4,846,667 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.223,416,315 - 3,474,471 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHKA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116,411,606 - 6,482,508 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038103,689,653 - 103,760,737 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000020692   ⟹   ENSHGLP00000020490
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476718,744,547 - 18,807,352 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000020693   ⟹   ENSHGLP00000020491
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476718,744,944 - 18,806,201 (+)Ensembl
RefSeq Acc Id: XM_004852196   ⟹   XP_004852253
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476718,744,647 - 18,807,352 (+)NCBI
RefSeq Acc Id: XM_021264488   ⟹   XP_021120147
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476718,744,647 - 18,801,825 (+)NCBI
RefSeq Acc Id: XM_021264489   ⟹   XP_021120148
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476718,744,647 - 18,801,825 (+)NCBI
RefSeq Acc Id: XM_021264490   ⟹   XP_021120149
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476718,744,647 - 18,807,352 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004852253 (Get FASTA)   NCBI Sequence Viewer  
  XP_021120147 (Get FASTA)   NCBI Sequence Viewer  
  XP_021120148 (Get FASTA)   NCBI Sequence Viewer  
  XP_021120149 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020490
  ENSHGLP00000020491
RefSeq Acc Id: XP_004852253   ⟸   XM_004852196
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021120149   ⟸   XM_021264490
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021120147   ⟸   XM_021264488
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021120148   ⟸   XM_021264489
- Peptide Label: isoform X3
Ensembl Acc Id: ENSHGLP00000020491   ⟸   ENSHGLT00000020693
Ensembl Acc Id: ENSHGLP00000020490   ⟸   ENSHGLT00000020692


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014648 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020692 ENTREZGENE
  ENSHGLT00000020693 ENTREZGENE
NCBI Gene Chka ENTREZGENE
UniProt A0AAX6PI84_HETGA UniProtKB/TrEMBL
  A0AAX6TCR7_HETGA UniProtKB/TrEMBL
  A0AAX6TIF1_HETGA UniProtKB/TrEMBL
  A0AAX6TJ55_HETGA UniProtKB/TrEMBL