Csnk2a2 (casein kinase 2 alpha 2) - Rat Genome Database

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Gene: Csnk2a2 (casein kinase 2 alpha 2) Heterocephalus glaber
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Symbol: Csnk2a2
Name: casein kinase 2 alpha 2
RGD ID: 18934793
Description: ENCODES a protein that exhibits protein kinase activity (ortholog); INVOLVED IN cerebral cortex development (ortholog); double-strand break repair (ortholog); liver regeneration (ortholog); PARTICIPATES IN E-cadherin signaling pathway; mitochondrial autophagy pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN acrosomal vesicle (ortholog); chromatin (ortholog); PcG protein complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: casein kinase II subunit alpha'
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,012,556 - 28,060,413 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,012,543 - 28,064,610 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Csnk2a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,012,556 - 28,060,413 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,012,543 - 28,064,610 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CSNK2A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381658,157,907 - 58,198,106 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1658,157,907 - 58,198,106 (-)EnsemblGRCh38hg38GRCh38
GRCh371658,191,811 - 58,232,010 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361656,749,312 - 56,789,283 (-)NCBINCBI36Build 36hg18NCBI36
Build 341656,749,314 - 56,789,283NCBI
Celera1642,691,263 - 42,731,230 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1644,059,729 - 44,099,930 (-)NCBIHuRef
CHM1_11659,598,846 - 59,638,724 (-)NCBICHM1_1
T2T-CHM13v2.01663,953,540 - 63,993,732 (-)NCBIT2T-CHM13v2.0
Csnk2a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39896,172,724 - 96,215,505 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl896,172,724 - 96,216,667 (-)EnsemblGRCm39 Ensembl
GRCm38895,446,096 - 95,488,868 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,446,096 - 95,490,039 (-)EnsemblGRCm38mm10GRCm38
MGSCv37897,969,996 - 98,012,720 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36898,337,101 - 98,377,919 (-)NCBIMGSCv36mm8
Celera899,760,768 - 99,802,427 (-)NCBICelera
Cytogenetic Map8C5- D1NCBI
cM Map847.12NCBI
Csnk2a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,562,340 - 9,602,136 (+)NCBIGRCr8
mRatBN7.2199,556,443 - 9,596,080 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,556,260 - 9,596,080 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx199,521,860 - 9,561,150 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,288,686 - 10,327,976 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,575,016 - 9,614,306 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0199,972,537 - 10,012,043 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl199,972,537 - 10,012,043 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0199,956,494 - 9,996,397 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,015,369 - 10,054,662 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11910,020,174 - 10,054,722 (+)NCBI
Celera199,448,494 - 9,487,786 (+)NCBICelera
Cytogenetic Map19p13NCBI
Csnk2a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,674,116 - 15,718,894 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543315,677,788 - 15,718,894 (-)NCBIChiLan1.0ChiLan1.0
CSNK2A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21867,620,768 - 67,660,961 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11673,541,651 - 73,581,859 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01638,426,399 - 38,466,575 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11657,557,262 - 57,596,218 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1657,557,270 - 57,596,218 (-)Ensemblpanpan1.1panPan2
CSNK2A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,361,328 - 58,441,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,360,838 - 58,432,371 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha254,991,254 - 55,071,046 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0258,899,781 - 58,979,588 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl258,899,298 - 58,971,571 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1255,731,413 - 55,811,164 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0256,739,015 - 56,818,751 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0257,631,725 - 57,711,511 (+)NCBIUU_Cfam_GSD_1.0
Csnk2a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,513,855 - 49,558,667 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647510,033,717 - 10,075,511 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647510,030,408 - 10,073,576 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSNK2A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,976,930 - 20,016,923 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1619,975,030 - 20,016,768 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,998,939 - 18,074,082 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSNK2A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1544,093,320 - 44,133,352 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl544,093,215 - 44,133,335 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604732,045,388 - 32,085,772 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000020951   ⟹   ENSHGLP00000020748
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474628,012,556 - 28,060,413 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000020952   ⟹   ENSHGLP00000020749
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474628,013,475 - 28,056,270 (+)Ensembl
RefSeq Acc Id: XM_013071599   ⟹   XP_012927053
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,012,580 - 28,060,413 (+)NCBI
RefSeq Acc Id: XM_021256973   ⟹   XP_021112632
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,012,543 - 28,064,610 (+)NCBI
RefSeq Acc Id: XM_021256974   ⟹   XP_021112633
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,012,543 - 28,064,610 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012927053 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112632 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112633 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020748
  ENSHGLP00000020749
  ENSHGLP00100009842
GenBank Protein JAN97160 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021112632   ⟸   XM_021256973
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J1S2 (UniProtKB/TrEMBL),   G5AUG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112633   ⟸   XM_021256974
- Peptide Label: isoform X2
- UniProtKB: G5AUG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012927053   ⟸   XM_013071599
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J1S2 (UniProtKB/TrEMBL),   G5AUG4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000020748   ⟸   ENSHGLT00000020951
Ensembl Acc Id: ENSHGLP00000020749   ⟸   ENSHGLT00000020952


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014843 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100007303 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000020951 ENTREZGENE
  ENSHGLT00000020952 UniProtKB/TrEMBL
  ENSHGLT00100009955 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro CK2_alpha UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report hgl:101717615 UniProtKB/TrEMBL
NCBI Gene Csnk2a2 ENTREZGENE
PANTHER CASEIN KINASE II SUBUNIT ALPHA UniProtKB/TrEMBL
  PTHR24054 UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A0P6J1S2 ENTREZGENE, UniProtKB/TrEMBL
  G5AUG4 ENTREZGENE, UniProtKB/TrEMBL