Spag17 (sperm associated antigen 17) - Rat Genome Database

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Gene: Spag17 (sperm associated antigen 17) Heterocephalus glaber
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Symbol: Spag17
Name: sperm associated antigen 17
RGD ID: 18933193
Description: INVOLVED IN axonemal central apparatus assembly (ortholog); epithelial cilium movement involved in extracellular fluid movement (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH cranioectodermal dysplasia 2 (ortholog); Idiopathic Short Stature, Autosomal (ortholog); Meniere's disease (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sperm-associated antigen 17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477213,636,625 - 13,836,466 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477213,626,247 - 13,836,442 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Spag17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477213,636,625 - 13,836,466 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477213,626,247 - 13,836,442 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPAG17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381117,953,590 - 118,185,228 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1117,953,590 - 118,185,228 (-)EnsemblGRCh38hg38GRCh38
GRCh371118,496,213 - 118,727,851 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361118,297,811 - 118,529,357 (-)NCBINCBI36Build 36hg18NCBI36
Celera1116,723,952 - 116,955,535 (-)NCBICelera
Cytogenetic Map1p12NCBI
HuRef1116,352,708 - 116,584,124 (-)NCBIHuRef
CHM1_11118,611,575 - 118,843,130 (-)NCBICHM1_1
T2T-CHM13v2.01117,962,843 - 118,194,535 (-)NCBIT2T-CHM13v2.0
Spag17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39399,792,653 - 100,050,638 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl399,792,722 - 100,050,638 (+)EnsemblGRCm39 Ensembl
GRCm38399,885,417 - 100,143,322 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl399,885,406 - 100,143,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv37399,689,340 - 99,947,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363100,014,493 - 100,271,849 (+)NCBIMGSCv36mm8
Celera3102,093,645 - 102,348,668 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map343.25NCBI
Spag17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82189,952,649 - 190,199,623 (+)NCBIGRCr8
mRatBN7.22187,264,004 - 187,511,061 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2187,264,009 - 187,510,501 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02202,159,659 - 202,452,361 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2202,200,797 - 202,443,026 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02221,858,583 - 221,903,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02221,623,554 - 221,784,884 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02221,837,514 - 221,849,735 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42194,845,206 - 195,089,225 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2179,716,884 - 179,959,180 (+)NCBICelera
Cytogenetic Map2q34NCBI
Spag17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543521,078,646 - 21,282,043 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543521,063,005 - 21,281,997 (-)NCBIChiLan1.0ChiLan1.0
SPAG17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21110,598,616 - 110,830,233 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11110,202,434 - 110,434,010 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0184,339,906 - 84,571,723 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11119,335,369 - 119,556,711 (+)NCBIpanpan1.1PanPan1.1panPan2
SPAG17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11755,248,136 - 55,468,036 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1755,248,137 - 55,467,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1754,891,599 - 55,114,823 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01756,127,507 - 56,346,757 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1756,127,513 - 56,347,359 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11755,161,427 - 55,381,719 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01755,199,577 - 55,419,614 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01755,774,338 - 56,001,496 (-)NCBIUU_Cfam_GSD_1.0
Spag17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505811,287,645 - 11,496,064 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366273,003,160 - 3,201,263 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366273,002,893 - 3,201,294 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPAG17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4102,427,186 - 102,826,226 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14102,596,465 - 102,826,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24112,361,404 - 112,451,393 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPAG17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12015,545,340 - 15,780,126 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2015,579,532 - 15,767,354 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603818,210,829 - 18,453,389 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000012946   ⟹   ENSHGLP00000012809
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477213,636,625 - 13,836,466 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000012947   ⟹   ENSHGLP00000012810
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477213,640,446 - 13,836,466 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000012948   ⟹   ENSHGLP00000012811
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477213,661,460 - 13,836,466 (-)Ensembl
RefSeq Acc Id: XM_021265753   ⟹   XP_021121412
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477213,626,247 - 13,836,442 (-)NCBI
RefSeq Acc Id: XM_021265754   ⟹   XP_021121413
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477213,626,247 - 13,836,442 (-)NCBI
RefSeq Acc Id: XM_021265755   ⟹   XP_021121414
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477213,626,247 - 13,836,442 (-)NCBI
RefSeq Acc Id: XM_021265756   ⟹   XP_021121415
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477213,626,247 - 13,836,442 (-)NCBI
RefSeq Acc Id: XM_021265757   ⟹   XP_021121416
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477213,626,247 - 13,836,442 (-)NCBI
RefSeq Acc Id: XM_021265758   ⟹   XP_021121417
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477213,626,247 - 13,765,903 (-)NCBI
RefSeq Acc Id: XR_002397992
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477213,626,247 - 13,836,442 (-)NCBI
RefSeq Acc Id: XR_002397993
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477213,636,885 - 13,836,442 (-)NCBI
RefSeq Acc Id: XR_002397994
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477213,648,431 - 13,836,442 (-)NCBI
RefSeq Acc Id: XP_021121416   ⟸   XM_021265757
- Peptide Label: isoform X5
- UniProtKB: G5B2R8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121415   ⟸   XM_021265756
- Peptide Label: isoform X4
- UniProtKB: G5B2R8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121413   ⟸   XM_021265754
- Peptide Label: isoform X2
- UniProtKB: G5B2R8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121414   ⟸   XM_021265755
- Peptide Label: isoform X3
- UniProtKB: G5B2R8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121412   ⟸   XM_021265753
- Peptide Label: isoform X1
- UniProtKB: G5B2R8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121417   ⟸   XM_021265758
- Peptide Label: isoform X6
- UniProtKB: G5B2R8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000012810   ⟸   ENSHGLT00000012947
Ensembl Acc Id: ENSHGLP00000012809   ⟸   ENSHGLT00000012946
Ensembl Acc Id: ENSHGLP00000012811   ⟸   ENSHGLT00000012948


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009162 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012946 ENTREZGENE
InterPro SPAG17 UniProtKB/TrEMBL
NCBI Gene Spag17 ENTREZGENE
PANTHER PF6 UniProtKB/TrEMBL
  SPERM-ASSOCIATED ANTIGEN 17 UniProtKB/TrEMBL
Pfam PapD-like UniProtKB/TrEMBL
UniProt G5B2R8 ENTREZGENE, UniProtKB/TrEMBL