SPAG17 (sperm associated antigen 17) - Rat Genome Database

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Gene: SPAG17 (sperm associated antigen 17) Canis lupus familiaris
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Symbol: SPAG17
Name: sperm associated antigen 17
RGD ID: 12294667
Description: INVOLVED IN axonemal central apparatus assembly (ortholog); epithelial cilium movement involved in extracellular fluid movement (ortholog); ASSOCIATED WITH cranioectodermal dysplasia 2 (ortholog); Idiopathic Short Stature, Autosomal (ortholog); Spermatogenic Failure 55 (ortholog); FOUND IN axonemal central apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sperm-associated antigen 17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11755,248,136 - 55,468,036 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1755,248,137 - 55,467,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1754,891,599 - 55,114,823 (-)NCBI
ROS_Cfam_1.01756,127,507 - 56,346,757 (-)NCBI
UMICH_Zoey_3.11755,161,427 - 55,381,719 (-)NCBI
UNSW_CanFamBas_1.01755,199,577 - 55,419,614 (-)NCBI
UU_Cfam_GSD_1.01755,774,338 - 56,001,496 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SPAG17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11755,248,136 - 55,468,036 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1755,248,137 - 55,467,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1754,891,599 - 55,114,823 (-)NCBI
ROS_Cfam_1.01756,127,507 - 56,346,757 (-)NCBI
UMICH_Zoey_3.11755,161,427 - 55,381,719 (-)NCBI
UNSW_CanFamBas_1.01755,199,577 - 55,419,614 (-)NCBI
UU_Cfam_GSD_1.01755,774,338 - 56,001,496 (-)NCBI
SPAG17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1117,953,590 - 118,185,228 (-)EnsemblGRCh38hg38GRCh38
GRCh381117,953,590 - 118,185,228 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371118,496,213 - 118,727,851 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361118,297,811 - 118,529,357 (-)NCBINCBI36hg18NCBI36
Celera1116,723,952 - 116,955,535 (-)NCBI
Cytogenetic Map1p12NCBI
HuRef1116,352,708 - 116,584,124 (-)NCBIHuRef
CHM1_11118,611,575 - 118,843,130 (-)NCBICHM1_1
Spag17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39399,792,653 - 100,050,638 (+)NCBIGRCm39mm39
GRCm39 Ensembl399,792,722 - 100,050,638 (+)Ensembl
GRCm38399,885,417 - 100,143,322 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl399,885,406 - 100,143,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv37399,689,340 - 99,947,245 (+)NCBIGRCm37mm9NCBIm37
MGSCv363100,014,493 - 100,271,849 (+)NCBImm8
Celera3102,093,645 - 102,348,668 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
Spag17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22187,264,004 - 187,511,061 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2187,264,009 - 187,510,501 (+)Ensembl
Rnor_6.02202,159,659 - 202,452,361 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2202,200,797 - 202,443,026 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02221,837,514 - 221,849,735 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02221,858,583 - 221,903,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02221,623,554 - 221,784,884 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42194,845,206 - 195,089,225 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2179,716,884 - 179,959,180 (+)NCBICelera
Cytogenetic Map2q34NCBI
Spag17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543521,078,646 - 21,282,043 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543521,063,005 - 21,281,997 (-)NCBIChiLan1.0ChiLan1.0
SPAG17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11119,335,369 - 119,556,711 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0184,339,906 - 84,571,723 (+)NCBIMhudiblu_PPA_v0panPan3
Spag17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505811,287,645 - 11,496,064 (+)NCBI
SpeTri2.0NW_0049366273,002,893 - 3,201,294 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPAG17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14102,596,465 - 102,826,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24112,361,404 - 112,451,393 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPAG17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12015,545,340 - 15,780,126 (+)NCBI
ChlSab1.1 Ensembl2015,579,532 - 15,767,354 (+)Ensembl
Vero_WHO_p1.0NW_02366603818,210,829 - 18,453,389 (+)NCBI
Spag17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477213,626,247 - 13,836,442 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low 3 22 6 6 6 6 7 10 3
Below cutoff 2 5 6 5 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014120622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000015854   ⟹   ENSCAFP00000014670
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1755,248,137 - 55,467,902 (-)Ensembl
RefSeq Acc Id: XM_014120622   ⟹   XP_013976097
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11755,248,136 - 55,468,035 (-)NCBI
Dog10K_Boxer_Tasha1754,891,599 - 55,114,822 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022404887   ⟹   XP_022260595
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11755,248,136 - 55,468,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022404888   ⟹   XP_022260596
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11755,251,713 - 55,468,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022404889   ⟹   XP_022260597
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11755,248,136 - 55,468,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038452960   ⟹   XP_038308888
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1754,895,023 - 55,114,823 (-)NCBI
RefSeq Acc Id: XM_038452961   ⟹   XP_038308889
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1754,891,599 - 55,114,822 (-)NCBI
RefSeq Acc Id: XM_038499331   ⟹   XP_038355259
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11755,161,427 - 55,381,718 (-)NCBI
RefSeq Acc Id: XM_038499332   ⟹   XP_038355260
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11755,164,848 - 55,381,719 (-)NCBI
RefSeq Acc Id: XM_038499333   ⟹   XP_038355261
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11755,161,427 - 55,381,718 (-)NCBI
RefSeq Acc Id: XM_038561898   ⟹   XP_038417826
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01755,774,338 - 56,001,495 (-)NCBI
RefSeq Acc Id: XM_038561899   ⟹   XP_038417827
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01755,777,763 - 56,001,496 (-)NCBI
RefSeq Acc Id: XM_038561900   ⟹   XP_038417828
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01755,774,338 - 56,001,495 (-)NCBI
RefSeq Acc Id: XM_038625971   ⟹   XP_038481899
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01755,199,577 - 55,419,613 (-)NCBI
RefSeq Acc Id: XM_038625972   ⟹   XP_038481900
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01755,202,997 - 55,419,614 (-)NCBI
RefSeq Acc Id: XM_038625973   ⟹   XP_038481901
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01755,199,577 - 55,419,613 (-)NCBI
RefSeq Acc Id: XM_038691900   ⟹   XP_038547828
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01756,127,507 - 56,346,756 (-)NCBI
RefSeq Acc Id: XM_038691901   ⟹   XP_038547829
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01756,130,931 - 56,346,757 (-)NCBI
RefSeq Acc Id: XM_038691902   ⟹   XP_038547830
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01756,127,507 - 56,346,756 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_013976097   ⟸   XM_014120622
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022260597   ⟸   XM_022404889
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_022260595   ⟸   XM_022404887
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022260596   ⟸   XM_022404888
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCAFP00000014670   ⟸   ENSCAFT00000015854
RefSeq Acc Id: XP_038355261   ⟸   XM_038499333
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038355259   ⟸   XM_038499331
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038355260   ⟸   XM_038499332
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038481901   ⟸   XM_038625973
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038481899   ⟸   XM_038625971
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038481900   ⟸   XM_038625972
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038547830   ⟸   XM_038691902
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038547828   ⟸   XM_038691900
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038547829   ⟸   XM_038691901
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038308889   ⟸   XM_038452961
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038308888   ⟸   XM_038452960
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038417828   ⟸   XM_038561900
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038417826   ⟸   XM_038561898
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038417827   ⟸   XM_038561899
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009951 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000014670 ENTREZGENE
NCBI Gene SPAG17 ENTREZGENE
VGNC ID VGNC:46695 ENTREZGENE