SPAG17 (sperm associated antigen 17) - Rat Genome Database

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Gene: SPAG17 (sperm associated antigen 17) Sus scrofa
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Symbol: SPAG17
Name: sperm associated antigen 17
RGD ID: 13991034
Description: INVOLVED IN axonemal central apparatus assembly (ortholog); epithelial cilium movement involved in extracellular fluid movement (ortholog); ASSOCIATED WITH cranioectodermal dysplasia 2 (ortholog); Idiopathic Short Stature, Autosomal (ortholog); Spermatogenic Failure 55 (ortholog); FOUND IN axonemal central apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: sperm-associated antigen 17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14102,596,465 - 102,826,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24112,361,404 - 112,451,393 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SPAG17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14102,596,465 - 102,826,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24112,361,404 - 112,451,393 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPAG17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1117,953,590 - 118,185,228 (-)EnsemblGRCh38hg38GRCh38
GRCh381117,953,590 - 118,185,228 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371118,496,213 - 118,727,851 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361118,297,811 - 118,529,357 (-)NCBINCBI36hg18NCBI36
Celera1116,723,952 - 116,955,535 (-)NCBI
Cytogenetic Map1p12NCBI
HuRef1116,352,708 - 116,584,124 (-)NCBIHuRef
CHM1_11118,611,575 - 118,843,130 (-)NCBICHM1_1
Spag17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39399,792,653 - 100,050,638 (+)NCBIGRCm39mm39
GRCm39 Ensembl399,792,722 - 100,050,638 (+)Ensembl
GRCm38399,885,417 - 100,143,322 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl399,885,406 - 100,143,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv37399,689,340 - 99,947,245 (+)NCBIGRCm37mm9NCBIm37
MGSCv363100,014,493 - 100,271,849 (+)NCBImm8
Celera3102,093,645 - 102,348,668 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
Spag17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22187,264,004 - 187,511,061 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2187,264,009 - 187,510,501 (+)Ensembl
Rnor_6.02202,159,659 - 202,452,361 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2202,200,797 - 202,443,026 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02221,837,514 - 221,849,735 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02221,858,583 - 221,903,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02221,623,554 - 221,784,884 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42194,845,206 - 195,089,225 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2179,716,884 - 179,959,180 (+)NCBICelera
Cytogenetic Map2q34NCBI
Spag17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543521,078,646 - 21,282,043 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543521,063,005 - 21,281,997 (-)NCBIChiLan1.0ChiLan1.0
SPAG17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11119,335,369 - 119,556,711 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0184,339,906 - 84,571,723 (+)NCBIMhudiblu_PPA_v0panPan3
SPAG17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11755,248,136 - 55,468,036 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1755,248,137 - 55,467,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1754,891,599 - 55,114,823 (-)NCBI
ROS_Cfam_1.01756,127,507 - 56,346,757 (-)NCBI
UMICH_Zoey_3.11755,161,427 - 55,381,719 (-)NCBI
UNSW_CanFamBas_1.01755,199,577 - 55,419,614 (-)NCBI
UU_Cfam_GSD_1.01755,774,338 - 56,001,496 (-)NCBI
Spag17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505811,287,645 - 11,496,064 (+)NCBI
SpeTri2.0NW_0049366273,002,893 - 3,201,294 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPAG17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12015,545,340 - 15,780,126 (+)NCBI
ChlSab1.1 Ensembl2015,579,532 - 15,767,354 (+)Ensembl
Vero_WHO_p1.0NW_02366603818,210,829 - 18,453,389 (+)NCBI
Spag17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477213,626,247 - 13,836,442 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021089972   ⟹   XP_020945631
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14102,596,465 - 102,826,213 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020945631 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020945631   ⟸   XM_021089972
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006726 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000007173 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007368 UniProtKB/TrEMBL
InterPro SPAG17 UniProtKB/TrEMBL
NCBI Gene SPAG17 ENTREZGENE
PANTHER PTHR21963 UniProtKB/TrEMBL
UniProt F1SAZ0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93372 ENTREZGENE