Symbol:
Rfx5
Name:
regulatory factor X5
RGD ID:
18932213
Description:
ENCODES a protein that exhibits transcription coregulator binding (ortholog); INVOLVED IN positive regulation of MHC class II biosynthetic process (ortholog); ASSOCIATED WITH Dravet syndrome (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); nucleoplasm (inferred); nucleus (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
DNA-binding protein RFX5
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Rfx5 (Heterocephalus glaber - naked mole-rat)
RFX5 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 151,340,640 - 151,347,252 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 151,340,640 - 151,347,326 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 1 151,313,116 - 151,319,728 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 149,579,740 - 149,586,393 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 1 148,126,189 - 148,132,773 NCBI Celera 1 124,428,407 - 124,435,060 (-) NCBI Celera Cytogenetic Map 1 q21.3 NCBI HuRef 1 122,691,259 - 122,697,912 (-) NCBI HuRef CHM1_1 1 152,708,791 - 152,715,444 (-) NCBI CHM1_1 T2T-CHM13v2.0 1 150,464,344 - 150,470,955 (-) NCBI T2T-CHM13v2.0
Rfx5 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 3 94,861,355 - 94,868,685 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 3 94,861,386 - 94,868,872 (+) Ensembl GRCm39 Ensembl GRCm38 3 94,950,689 - 94,961,561 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 3 94,954,075 - 94,961,561 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 3 94,758,937 - 94,765,483 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 3 95,039,585 - 95,046,965 (+) NCBI MGSCv36 mm8 Celera 3 96,386,303 - 96,392,849 (+) NCBI Celera Cytogenetic Map 3 F2.1 NCBI cM Map 3 40.74 NCBI
Rfx5 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 185,210,206 - 185,217,735 (+) NCBI GRCr8 mRatBN7.2 2 182,521,191 - 182,528,720 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 182,521,202 - 182,528,717 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 2 190,185,995 - 190,193,500 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 2 187,981,722 - 187,989,233 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 2 182,818,476 - 182,825,981 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 2 196,119,054 - 196,128,109 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 196,120,580 - 196,128,095 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 215,615,220 - 215,622,795 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 189,855,438 - 189,862,953 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 2 189,815,436 - 189,820,045 (+) NCBI Celera 2 175,063,246 - 175,070,761 (+) NCBI Celera Cytogenetic Map 2 q34 NCBI
Rfx5 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955588 689,170 - 695,695 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955588 687,086 - 695,696 (-) NCBI ChiLan1.0 ChiLan1.0
RFX5 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 1 98,476,202 - 98,482,978 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 1 98,227,435 - 98,234,205 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 1 126,699,772 - 126,706,486 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 1 130,345,977 - 130,352,728 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 1 130,345,977 - 130,352,317 (-) Ensembl panpan1.1 panPan2
RFX5 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 17 60,393,773 - 60,400,150 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 17 60,395,321 - 60,400,009 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 17 59,837,260 - 59,843,619 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 17 61,410,233 - 61,416,589 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 17 61,411,449 - 61,416,477 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 17 60,238,121 - 60,244,473 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 17 60,324,024 - 60,330,356 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 17 61,052,663 - 61,059,019 (-) NCBI UU_Cfam_GSD_1.0
Rfx5 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405058 22,502,460 - 22,509,971 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936580 1,535,069 - 1,539,889 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936580 1,532,806 - 1,540,353 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
RFX5 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 4 97,902,172 - 97,913,283 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 4 97,901,955 - 97,913,283 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 4 107,102,324 - 107,109,405 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
RFX5 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 20 12,345,078 - 12,351,699 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 20 12,345,063 - 12,352,646 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666038 11,919,702 - 11,926,453 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSHGLT00000006977 ⟹ ENSHGLP00000006893
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624772 18,517,305 - 18,523,220 (+) Ensembl
Ensembl Acc Id:
ENSHGLT00000006978 ⟹ ENSHGLP00000006894
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624772 18,518,832 - 18,523,015 (+) Ensembl
Ensembl Acc Id:
ENSHGLT00000006979 ⟹ ENSHGLP00000006895
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624772 18,518,850 - 18,521,887 (+) Ensembl
RefSeq Acc Id:
XM_004853993 ⟹ XP_004854050
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624772 18,517,829 - 18,523,220 (+) NCBI
RefSeq Acc Id:
XM_004853994 ⟹ XP_004854051
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624772 18,518,070 - 18,523,220 (+) NCBI
RefSeq Acc Id:
XP_004854050 ⟸ XM_004853993
- UniProtKB:
G5AK01 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_004854051 ⟸ XM_004853994
- UniProtKB:
G5AK01 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSHGLP00000006894 ⟸ ENSHGLT00000006978
Ensembl Acc Id:
ENSHGLP00000006893 ⟸ ENSHGLT00000006977
Ensembl Acc Id:
ENSHGLP00000006895 ⟸ ENSHGLT00000006979