Ca9 (carbonic anhydrase 9) - Rat Genome Database

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Gene: Ca9 (carbonic anhydrase 9) Heterocephalus glaber
Analyze
Symbol: Ca9
Name: carbonic anhydrase 9
RGD ID: 18929989
Description: ENCODES a protein that exhibits carbonate dehydratase activity (inferred); lyase activity (inferred); metal ion binding (inferred); INVOLVED IN morphogenesis of an epithelium (ortholog); response to hypoxia (ortholog); response to testosterone (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); Anaplasia (ortholog); anauxetic dysplasia (ortholog); FOUND IN basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248685,109,846 - 5,116,949 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248685,110,602 - 5,131,167 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ca9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248685,109,846 - 5,116,949 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248685,110,602 - 5,131,167 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38935,673,928 - 35,681,159 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl935,673,928 - 35,681,159 (+)EnsemblGRCh38hg38GRCh38
GRCh37935,673,925 - 35,681,156 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36935,663,915 - 35,671,152 (+)NCBINCBI36Build 36hg18NCBI36
Build 34935,663,914 - 35,671,152NCBI
Celera935,607,463 - 35,614,702 (+)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef935,629,523 - 35,636,764 (+)NCBIHuRef
CHM1_1935,673,743 - 35,680,984 (+)NCBICHM1_1
T2T-CHM13v2.0935,694,579 - 35,701,811 (+)NCBIT2T-CHM13v2.0
Car9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,507,026 - 43,513,729 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl443,506,966 - 43,513,729 (+)EnsemblGRCm39 Ensembl
GRCm38443,507,026 - 43,513,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,506,966 - 43,513,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv37443,519,898 - 43,526,597 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36443,528,107 - 43,534,829 (+)NCBIMGSCv36mm8
Celera443,540,895 - 43,547,584 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map423.05NCBI
Car9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8562,559,024 - 62,565,626 (+)NCBIGRCr8
mRatBN7.2557,763,234 - 57,769,838 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,763,206 - 57,769,838 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx559,743,112 - 59,749,748 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0561,561,925 - 61,568,564 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0561,533,190 - 61,539,753 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0559,008,277 - 59,015,535 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl559,008,933 - 59,015,528 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0563,533,527 - 63,540,129 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4559,986,413 - 59,993,015 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1559,986,589 - 59,992,484 (+)NCBI
Celera556,343,808 - 56,350,416 (+)NCBICelera
Cytogenetic Map5q22NCBI
Ca9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955472619,245 - 625,051 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955472619,084 - 625,570 (-)NCBIChiLan1.0ChiLan1.0
CA9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21188,906,190 - 88,913,457 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1988,912,119 - 88,919,393 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0935,525,877 - 35,533,159 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1936,328,205 - 36,335,474 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl936,328,303 - 36,335,340 (+)Ensemblpanpan1.1panPan2
CA9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11152,205,619 - 52,211,281 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1152,205,668 - 52,211,267 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1150,773,252 - 50,778,851 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01153,270,515 - 53,276,220 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1153,270,614 - 53,276,220 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11151,815,201 - 51,820,803 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01151,798,686 - 51,804,281 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01152,500,820 - 52,506,421 (+)NCBIUU_Cfam_GSD_1.0
Ca9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947167,124,669 - 167,131,057 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365243,672,541 - 3,678,433 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365243,672,393 - 3,678,630 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1236,394,306 - 236,400,822 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11236,393,727 - 236,400,994 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21264,118,816 - 264,126,024 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CA9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11244,921,530 - 44,929,504 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1244,921,665 - 44,928,831 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603842,026,370 - 42,034,593 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000008988   ⟹   ENSHGLP00000008893
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248685,109,846 - 5,116,949 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000008989   ⟹   ENSHGLP00000008894
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248685,109,846 - 5,116,949 (-)Ensembl
RefSeq Acc Id: XM_004870155   ⟹   XP_004870212
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248685,110,602 - 5,131,167 (-)NCBI
RefSeq Acc Id: XM_021248468   ⟹   XP_021104127
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248685,110,602 - 5,131,167 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004870212 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104127 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008893
  ENSHGLP00000008894
  ENSHGLP00100015949
GenBank Protein JAN98602 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021104127   ⟸   XM_021248468
- Peptide Label: isoform X2
- UniProtKB: G5BL00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004870212   ⟸   XM_004870155
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K2K6 (UniProtKB/TrEMBL),   G5BL00 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000008893   ⟸   ENSHGLT00000008988
RefSeq Acc Id: ENSHGLP00000008894   ⟸   ENSHGLT00000008989


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006391 Ensembl, ENTREZGENE
  ENSHGLG00100011770 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008988 ENTREZGENE
  ENSHGLT00000008989 ENTREZGENE
  ENSHGLT00100016125 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro CA_dom UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class_CS UniProtKB/TrEMBL
KEGG Report hgl:101722784 UniProtKB/TrEMBL
NCBI Gene Ca9 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
  PTHR18952:SF18 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_1 UniProtKB/TrEMBL
  ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt A0A0P6K2K6 ENTREZGENE, UniProtKB/TrEMBL
  G5BL00 ENTREZGENE, UniProtKB/TrEMBL