Polr1h (RNA polymerase I subunit H) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Polr1h (RNA polymerase I subunit H) Heterocephalus glaber
Analyze
Symbol: Polr1h
Name: RNA polymerase I subunit H (Ensembl:zinc ribbon domain containing 1)
RGD ID: 18929306
Description: ENCODES a protein that exhibits DNA-directed 5'-3' RNA polymerase activity (inferred); metal ion binding (inferred); nucleic acid binding (inferred); INVOLVED IN DNA-templated transcription (inferred); termination of RNA polymerase I transcription (inferred); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH Experimental Neoplasms (ortholog); megacolon (ortholog); Stomach Neoplasms (ortholog); FOUND IN DNA-directed RNA polymerase complex (inferred); RNA polymerase I complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA-directed RNA polymerase I subunit RPA12; zinc ribbon domain containing 1; Znrd1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,340,155 - 25,344,380 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475425,340,498 - 25,344,032 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Polr1h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,340,155 - 25,344,380 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475425,340,498 - 25,344,032 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
POLR1H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,060,062 - 30,064,907 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,058,899 - 30,064,909 (+)EnsemblGRCh38hg38GRCh38
GRCh37630,029,042 - 30,032,684 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,137,015 - 30,140,665 (+)NCBINCBI36Build 36hg18NCBI36
Build 34630,137,014 - 30,140,664NCBI
Celera631,627,294 - 31,630,939 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,827,192 - 29,830,858 (+)NCBIHuRef
CHM1_1630,031,066 - 30,034,735 (+)NCBICHM1_1
T2T-CHM13v2.0629,925,545 - 29,929,181 (+)NCBIT2T-CHM13v2.0
Polr1h
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,265,250 - 37,269,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,265,248 - 37,269,451 (-)EnsemblGRCm39 Ensembl
GRCm381736,954,358 - 36,958,525 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1736,954,356 - 36,958,559 (-)EnsemblGRCm38mm10GRCm38
MGSCv371737,091,303 - 37,095,373 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361736,562,411 - 36,566,481 (-)NCBIMGSCv36mm8
Celera1740,377,895 - 40,381,965 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
Polr1h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,600,170 - 1,604,088 (+)NCBIGRCr8
mRatBN7.2201,594,936 - 1,598,854 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,594,936 - 1,598,854 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx201,647,698 - 1,651,624 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,651,195 - 1,655,121 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,592,702 - 1,596,588 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0202,088,518 - 2,092,436 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl202,088,533 - 2,092,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0204,125,232 - 4,129,150 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,687,673 - 1,691,591 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1201,687,849 - 1,691,468 (+)NCBI
Celera202,303,510 - 2,307,419 (+)NCBICelera
Cytogenetic Map20p12NCBI
Polr1h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583191,564 - 195,358 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955583191,252 - 195,563 (+)NCBIChiLan1.0ChiLan1.0
POLR1H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2544,654,673 - 44,658,296 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1640,617,667 - 40,621,308 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0629,839,067 - 29,842,692 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1630,509,326 - 30,512,956 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,509,326 - 30,512,956 (+)Ensemblpanpan1.1panPan2
POLR1H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13526,285,520 - 26,288,550 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3526,285,538 - 26,288,534 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.03526,594,054 - 26,597,115 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13526,248,647 - 26,251,702 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03526,309,259 - 26,312,356 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03527,779,521 - 27,782,596 (+)NCBIUU_Cfam_GSD_1.0
Polr1h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,608,011 - 32,612,807 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936723978,613 - 984,405 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936723979,076 - 983,814 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR1H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,626,846 - 22,631,545 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,626,871 - 22,631,557 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2725,156,351 - 25,161,054 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLR1H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,434,992 - 42,438,993 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1742,435,196 - 42,438,981 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604429,716,158 - 29,720,178 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027517   ⟹   ENSHGLP00000027276
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475425,340,155 - 25,344,380 (-)Ensembl
RefSeq Acc Id: XM_004847115   ⟹   XP_004847172
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475425,340,498 - 25,344,032 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004847172 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027276
GenBank Protein JAN97414 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004847172   ⟸   XM_004847115
- UniProtKB: G5AKF2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000027276   ⟸   ENSHGLT00000027517


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019393 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027517 ENTREZGENE
Gene3D-CATH 2.20.25.10 UniProtKB/TrEMBL
InterPro DNA-dir_RNA_pol-M_15_CS UniProtKB/TrEMBL
  Rpa12/Rpb9/Rpc10/TFS UniProtKB/TrEMBL
  Zn_ribbon_RPA12_C UniProtKB/TrEMBL
  Znf_TFIIS UniProtKB/TrEMBL
NCBI Gene Znrd1 ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASE UniProtKB/TrEMBL
  DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12 UniProtKB/TrEMBL
Pfam TFIIS_C UniProtKB/TrEMBL
PIRSF RNApol_RpoM UniProtKB/TrEMBL
PROSITE RNA_POL_M_15KD UniProtKB/TrEMBL
  ZF_TFIIS_2 UniProtKB/TrEMBL
SMART ZnF_C2C2 UniProtKB/TrEMBL
Superfamily-SCOP Zinc beta-ribbon UniProtKB/TrEMBL
UniProt G5AKF2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-04-07 Polr1h  RNA polymerase I subunit H  Znrd1  zinc ribbon domain containing 1  Symbol and/or name change 5135510 APPROVED