Urb1 (URB1 ribosome biogenesis homolog) - Rat Genome Database

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Gene: Urb1 (URB1 ribosome biogenesis homolog) Heterocephalus glaber
Analyze
Symbol: Urb1
Name: URB1 ribosome biogenesis homolog
RGD ID: 18916520
Description: INVOLVED IN maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (inferred); maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (inferred); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); genetic disease (ortholog); FOUND IN fibrillar center (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nucleolar pre-ribosomal-associated protein 1; URB1 ribosome biogenesis 1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474520,648,230 - 20,715,549 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474520,647,661 - 20,716,262 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Urb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474520,648,230 - 20,715,549 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474520,647,661 - 20,716,262 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
URB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382132,311,018 - 32,393,012 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2132,311,018 - 32,393,012 (-)EnsemblGRCh38hg38GRCh38
GRCh372133,683,329 - 33,765,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362133,683,330 - 33,765,312 (-)NCBINCBI36Build 36hg18NCBI36
Celera2118,866,931 - 18,948,939 (-)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2119,092,100 - 19,174,182 (-)NCBIHuRef
CHM1_12133,245,146 - 33,327,161 (-)NCBICHM1_1
T2T-CHM13v2.02130,680,775 - 30,762,860 (-)NCBIT2T-CHM13v2.0
Urb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391690,548,415 - 90,607,312 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1690,548,415 - 90,607,301 (-)EnsemblGRCm39 Ensembl
GRCm381690,751,527 - 90,810,467 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1690,751,527 - 90,810,413 (-)EnsemblGRCm38mm10GRCm38
MGSCv371690,751,772 - 90,810,658 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361690,640,386 - 90,699,251 (-)NCBIMGSCv36mm8
Celera1691,832,957 - 91,891,665 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1651.92NCBI
Urb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81143,490,633 - 43,551,398 (-)NCBIGRCr8
mRatBN7.21130,004,539 - 30,065,315 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,004,539 - 30,065,363 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1138,690,104 - 38,750,824 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01131,361,515 - 31,422,227 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01130,536,196 - 30,596,923 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01130,916,740 - 30,977,423 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1130,916,730 - 30,977,483 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01134,528,215 - 34,588,898 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41130,732,790 - 30,793,473 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11130,738,941 - 30,818,441 (-)NCBI
Celera1129,672,337 - 29,733,034 (-)NCBICelera
Cytogenetic Map11q11NCBI
Urb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540731,848,012 - 31,915,362 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540731,849,103 - 31,915,457 (-)NCBIChiLan1.0ChiLan1.0
URB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22228,388,428 - 28,513,989 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12123,248,051 - 23,375,791 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02118,637,996 - 18,761,045 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12132,028,801 - 32,141,275 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2132,061,966 - 32,141,275 (-)Ensemblpanpan1.1panPan2
URB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13127,087,196 - 27,158,144 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3127,087,570 - 27,158,164 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3127,080,534 - 27,151,483 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03127,207,657 - 27,278,618 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3127,207,735 - 27,278,625 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13127,152,622 - 27,223,569 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03127,164,342 - 27,235,271 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03127,672,375 - 27,742,811 (-)NCBIUU_Cfam_GSD_1.0
Urb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497127,679,168 - 27,748,856 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365009,718,925 - 9,788,666 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365009,718,981 - 9,790,094 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
URB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13195,974,790 - 196,047,863 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113195,974,790 - 196,047,882 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
URB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1259,733,260 - 59,811,990 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl259,733,902 - 59,814,018 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660712,275,305 - 2,354,903 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006801   ⟹   ENSHGLP00000006718
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474520,648,230 - 20,715,549 (-)Ensembl
RefSeq Acc Id: XM_013071288   ⟹   XP_012926742
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474520,647,661 - 20,716,262 (-)NCBI
RefSeq Acc Id: XM_021256154   ⟹   XP_021111813
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474520,647,661 - 20,716,262 (-)NCBI
RefSeq Acc Id: XM_021256155   ⟹   XP_021111814
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474520,647,661 - 20,715,629 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012926742 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111813 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111814 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006718
GenBank Protein JAN97221 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012926742   ⟸   XM_013071288
- Peptide Label: isoform X2
- UniProtKB: A0A0N8ESR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111813   ⟸   XM_021256154
- Peptide Label: isoform X1
- UniProtKB: A0A0N8ESR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111814   ⟸   XM_021256155
- Peptide Label: isoform X1
- UniProtKB: A0A0N8ESR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000006718   ⟸   ENSHGLT00000006801


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004907 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006801 ENTREZGENE
InterPro ARM-type_fold UniProtKB/TrEMBL
  NopRA1_C UniProtKB/TrEMBL
  Npa1_N UniProtKB/TrEMBL
  URB1 UniProtKB/TrEMBL
NCBI Gene Urb1 ENTREZGENE
PANTHER NUCLEOLAR PRE-RIBOSOMAL-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR13500 UniProtKB/TrEMBL
Pfam NopRA1 UniProtKB/TrEMBL
  Npa1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A0N8ESR9 ENTREZGENE, UniProtKB/TrEMBL