Slc4a9 (solute carrier family 4 member 9) - Rat Genome Database

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Gene: Slc4a9 (solute carrier family 4 member 9) Heterocephalus glaber
Analyze
Symbol: Slc4a9
Name: solute carrier family 4 member 9
RGD ID: 18912657
Description: ENCODES a protein that exhibits chloride:bicarbonate antiporter activity (ortholog); sodium,bicarbonate:chloride antiporter activity (ortholog); sodium:bicarbonate symporter activity (ortholog); INVOLVED IN monoatomic anion transport (ortholog); saliva secretion (ortholog); sodium ion transmembrane transport (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN apical part of cell (ortholog); basolateral plasma membrane (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: anion exchange protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,137,641 - 33,151,287 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474333,137,588 - 33,165,882 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc4a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,137,641 - 33,151,287 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474333,137,588 - 33,165,882 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC4A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,360,194 - 140,375,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,360,194 - 140,375,141 (+)EnsemblGRCh38hg38GRCh38
GRCh375139,739,779 - 139,754,726 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,719,971 - 139,734,906 (+)NCBINCBI36Build 36hg18NCBI36
Build 345139,719,978 - 139,734,770NCBI
Celera5135,816,417 - 135,831,351 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5134,884,947 - 134,899,881 (+)NCBIHuRef
CHM1_15139,172,936 - 139,187,871 (+)NCBICHM1_1
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBIT2T-CHM13v2.0
Slc4a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,661,117 - 36,689,325 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,661,200 - 36,689,326 (+)EnsemblGRCm39 Ensembl
GRCm381836,528,066 - 36,556,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,528,147 - 36,556,273 (+)EnsemblGRCm38mm10GRCm38
MGSCv371836,687,806 - 36,704,262 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,654,126 - 36,670,582 (+)NCBIMGSCv36mm8
Celera1836,977,494 - 36,993,958 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
Slc4a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,402,793 - 28,418,638 (+)NCBIGRCr8
mRatBN7.21828,128,740 - 28,144,554 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,128,740 - 28,141,543 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,255,895 - 28,271,705 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,017,979 - 29,033,793 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,353,214 - 28,369,034 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,352,596 - 29,373,603 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,352,749 - 29,365,595 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,059,292 - 29,075,125 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,166,512 - 29,182,720 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11829,193,166 - 29,209,361 (+)NCBI
Celera1827,856,748 - 27,872,556 (+)NCBICelera
Cytogenetic Map18p11NCBI
Slc4a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955418269,598 - 288,145 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955418273,383 - 288,675 (-)NCBIChiLan1.0ChiLan1.0
SLC4A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,619,980 - 135,648,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15133,759,531 - 133,790,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05135,725,067 - 135,750,666 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15141,844,078 - 141,861,739 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5141,844,078 - 141,861,739 (+)Ensemblpanpan1.1panPan2
SLC4A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,575,316 - 35,589,878 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,576,550 - 35,587,980 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,614,675 - 32,628,346 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,032,020 - 36,045,688 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,032,171 - 36,043,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,083,693 - 33,097,361 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,951,171 - 33,964,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,704,160 - 34,717,829 (+)NCBIUU_Cfam_GSD_1.0
Slc4a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,242,902 - 152,256,556 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,354,954 - 9,366,718 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,354,954 - 9,368,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,128,917 - 142,142,662 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,128,502 - 142,143,100 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,068,780 - 148,085,448 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,009,857 - 43,026,123 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,010,484 - 43,026,689 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603434,857,721 - 34,873,876 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013071144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013071145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013071147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013071148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013071149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001183257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002393854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002393855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002393856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002393857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002393858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002393859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002393860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002393861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002393862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01022478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000020497   ⟹   ENSHGLP00000020295
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474333,137,641 - 33,151,287 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000020498   ⟹   ENSHGLP00000020296
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474333,137,641 - 33,151,287 (+)Ensembl
RefSeq Acc Id: XM_013071144   ⟹   XP_012926598
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,589 - 33,152,354 (+)NCBI
RefSeq Acc Id: XM_013071145   ⟹   XP_012926599
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,604 - 33,152,779 (+)NCBI
RefSeq Acc Id: XM_013071147   ⟹   XP_012926601
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,590 - 33,152,779 (+)NCBI
RefSeq Acc Id: XM_013071148   ⟹   XP_012926602
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,694 - 33,152,779 (+)NCBI
RefSeq Acc Id: XM_013071149   ⟹   XP_012926603
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,604 - 33,152,779 (+)NCBI
RefSeq Acc Id: XM_021255922   ⟹   XP_021111581
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,589 - 33,152,779 (+)NCBI
RefSeq Acc Id: XM_021255923   ⟹   XP_021111582
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,589 - 33,152,779 (+)NCBI
RefSeq Acc Id: XM_021255924   ⟹   XP_021111583
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,589 - 33,152,779 (+)NCBI
RefSeq Acc Id: XM_021255925   ⟹   XP_021111584
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,604 - 33,152,779 (+)NCBI
RefSeq Acc Id: XR_001183257
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,589 - 33,165,872 (+)NCBI
RefSeq Acc Id: XR_002393854
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,589 - 33,156,849 (+)NCBI
RefSeq Acc Id: XR_002393855
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,589 - 33,156,848 (+)NCBI
RefSeq Acc Id: XR_002393856
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,589 - 33,153,166 (+)NCBI
RefSeq Acc Id: XR_002393857
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,589 - 33,152,925 (+)NCBI
RefSeq Acc Id: XR_002393858
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,589 - 33,156,850 (+)NCBI
RefSeq Acc Id: XR_002393859
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,589 - 33,153,166 (+)NCBI
RefSeq Acc Id: XR_002393860
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,589 - 33,165,882 (+)NCBI
RefSeq Acc Id: XR_002393861
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,588 - 33,152,779 (+)NCBI
RefSeq Acc Id: XR_002393862
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474333,137,588 - 33,152,779 (+)NCBI
RefSeq Acc Id: XP_021111581   ⟸   XM_021255922
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SQ79 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111582   ⟸   XM_021255923
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SQ79 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111583   ⟸   XM_021255924
- Peptide Label: isoform X2
- UniProtKB: A0AAX6SUU3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012926598   ⟸   XM_013071144
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SQ79 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012926601   ⟸   XM_013071147
- Peptide Label: isoform X4
- UniProtKB: A0AAX6QVU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012926603   ⟸   XM_013071149
- Peptide Label: isoform X6
- UniProtKB: A0AAX6QW41 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012926599   ⟸   XM_013071145
- Peptide Label: isoform X3
- UniProtKB: A0AAX6QUN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111584   ⟸   XM_021255925
- Peptide Label: isoform X7
- UniProtKB: A0AAX6SSU4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012926602   ⟸   XM_013071148
- Peptide Label: isoform X5
- UniProtKB: A0AAX6QSM5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000020295   ⟸   ENSHGLT00000020497
Ensembl Acc Id: ENSHGLP00000020296   ⟸   ENSHGLT00000020498


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014520 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020497 ENTREZGENE
  ENSHGLT00000020498 ENTREZGENE
NCBI Gene Slc4a9 ENTREZGENE
UniProt A0AAX6QSM5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QUN0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QVU7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QW41 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SQ79 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SSU4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SUU3 ENTREZGENE, UniProtKB/TrEMBL