Slc4a9 (solute carrier family 4 member 9) - Rat Genome Database

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Gene: Slc4a9 (solute carrier family 4 member 9) Chinchilla lanigera
Analyze
Symbol: Slc4a9
Name: solute carrier family 4 member 9
RGD ID: 8745432
Description: ENCODES a protein that exhibits chloride:bicarbonate antiporter activity (ortholog); sodium,bicarbonate:chloride antiporter activity (ortholog); sodium:bicarbonate symporter activity (ortholog); INVOLVED IN monoatomic anion transport (ortholog); saliva secretion (ortholog); sodium ion transmembrane transport (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN apical part of cell (ortholog); basolateral plasma membrane (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: anion exchange protein 4; solute carrier family 4, sodium bicarbonate cotransporter, member 9
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955418269,598 - 288,145 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955418273,383 - 288,675 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc4a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955418269,598 - 288,145 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955418273,383 - 288,675 (-)NCBIChiLan1.0ChiLan1.0
SLC4A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,360,194 - 140,375,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,360,194 - 140,375,141 (+)EnsemblGRCh38hg38GRCh38
GRCh375139,739,779 - 139,754,726 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,719,971 - 139,734,906 (+)NCBINCBI36Build 36hg18NCBI36
Build 345139,719,978 - 139,734,770NCBI
Celera5135,816,417 - 135,831,351 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5134,884,947 - 134,899,881 (+)NCBIHuRef
CHM1_15139,172,936 - 139,187,871 (+)NCBICHM1_1
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBIT2T-CHM13v2.0
Slc4a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,661,117 - 36,689,325 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,661,200 - 36,689,326 (+)EnsemblGRCm39 Ensembl
GRCm381836,528,066 - 36,556,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,528,147 - 36,556,273 (+)EnsemblGRCm38mm10GRCm38
MGSCv371836,687,806 - 36,704,262 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,654,126 - 36,670,582 (+)NCBIMGSCv36mm8
Celera1836,977,494 - 36,993,958 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
Slc4a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,402,793 - 28,418,638 (+)NCBIGRCr8
mRatBN7.21828,128,740 - 28,144,554 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,128,740 - 28,141,543 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,255,895 - 28,271,705 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,017,979 - 29,033,793 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,353,214 - 28,369,034 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,352,596 - 29,373,603 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,352,749 - 29,365,595 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,059,292 - 29,075,125 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,166,512 - 29,182,720 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11829,193,166 - 29,209,361 (+)NCBI
Celera1827,856,748 - 27,872,556 (+)NCBICelera
Cytogenetic Map18p11NCBI
SLC4A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,619,980 - 135,648,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15133,759,531 - 133,790,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05135,725,067 - 135,750,666 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15141,844,078 - 141,861,739 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5141,844,078 - 141,861,739 (+)Ensemblpanpan1.1panPan2
SLC4A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,575,316 - 35,589,878 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,576,550 - 35,587,980 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,614,675 - 32,628,346 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,032,020 - 36,045,688 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,032,171 - 36,043,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,083,693 - 33,097,361 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,951,171 - 33,964,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,704,160 - 34,717,829 (+)NCBIUU_Cfam_GSD_1.0
Slc4a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,242,902 - 152,256,556 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,354,954 - 9,366,718 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,354,954 - 9,368,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,128,917 - 142,142,662 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,128,502 - 142,143,100 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,068,780 - 148,085,448 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,009,857 - 43,026,123 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,010,484 - 43,026,689 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603434,857,721 - 34,873,876 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc4a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,137,641 - 33,151,287 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474333,137,588 - 33,165,882 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000005197   ⟹   ENSCLAP00000005104
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955418269,598 - 288,090 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000005198   ⟹   ENSCLAP00000005105
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955418275,104 - 288,145 (-)Ensembl
RefSeq Acc Id: XM_013512899   ⟹   XP_013368353
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955418273,383 - 288,671 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512900   ⟹   XP_013368354
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955418273,383 - 288,671 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512901   ⟹   XP_013368355
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955418275,638 - 288,673 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512902   ⟹   XP_013368356
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955418273,383 - 288,672 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512903   ⟹   XP_013368357
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955418276,407 - 288,675 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001233497
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955418273,383 - 288,671 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013368356   ⟸   XM_013512902
- Peptide Label: isoform X4
- UniProtKB: A0A8C2UUT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368354   ⟸   XM_013512900
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UUT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368353   ⟸   XM_013512899
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UYE4 (UniProtKB/TrEMBL),   A0A8C2UUT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368355   ⟸   XM_013512901
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UUT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368357   ⟸   XM_013512903
- Peptide Label: isoform X5
- UniProtKB: A0A8C2UUT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000005105   ⟸   ENSCLAT00000005198
RefSeq Acc Id: ENSCLAP00000005104   ⟸   ENSCLAT00000005197

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003623 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005197 ENTREZGENE
  ENSCLAT00000005197.1 UniProtKB/TrEMBL
  ENSCLAT00000005198.1 UniProtKB/TrEMBL
Gene3D-CATH Helical hairpin bin UniProtKB/TrEMBL
InterPro Band3_cytoplasmic_dom UniProtKB/TrEMBL
  HCO3_transpt-like_TM_dom UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/TrEMBL
  Na/HCO3_transpt UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/TrEMBL
NCBI Gene Slc4a9 ENTREZGENE
PANTHER ANION EXCHANGE PROTEIN 4 UniProtKB/TrEMBL
  PTHR11453 UniProtKB/TrEMBL
Pfam Band_3_cyto UniProtKB/TrEMBL
  HCO3_cotransp UniProtKB/TrEMBL
PRINTS HCO3TRNSPORT UniProtKB/TrEMBL
  NAHCO3TRSPRT UniProtKB/TrEMBL
Superfamily-SCOP SSF55804 UniProtKB/TrEMBL
UniProt A0A8C2UUT7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UYE4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc4a9  solute carrier family 4 member 9    solute carrier family 4, sodium bicarbonate cotransporter, member 9  Symbol and/or name change 5135510 APPROVED