SLC4A9 (solute carrier family 4 member 9) - Rat Genome Database

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Gene: SLC4A9 (solute carrier family 4 member 9) Pan paniscus
Analyze
Symbol: SLC4A9
Name: solute carrier family 4 member 9
RGD ID: 11865646
Description: ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (inferred); chloride:bicarbonate antiporter activity (inferred); monoatomic anion transmembrane transporter activity (inferred); INVOLVED IN monoatomic anion transport (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: anion exchange protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,619,980 - 135,648,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15133,759,531 - 133,790,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05135,725,067 - 135,750,666 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15141,844,078 - 141,861,739 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5141,844,078 - 141,861,739 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC4A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,619,980 - 135,648,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15133,759,531 - 133,790,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05135,725,067 - 135,750,666 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15141,844,078 - 141,861,739 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5141,844,078 - 141,861,739 (+)Ensemblpanpan1.1panPan2
SLC4A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,360,194 - 140,375,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,360,194 - 140,375,141 (+)EnsemblGRCh38hg38GRCh38
GRCh375139,739,779 - 139,754,726 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,719,971 - 139,734,906 (+)NCBINCBI36Build 36hg18NCBI36
Build 345139,719,978 - 139,734,770NCBI
Celera5135,816,417 - 135,831,351 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5134,884,947 - 134,899,881 (+)NCBIHuRef
CHM1_15139,172,936 - 139,187,871 (+)NCBICHM1_1
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBIT2T-CHM13v2.0
Slc4a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,661,117 - 36,689,325 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,661,200 - 36,689,326 (+)EnsemblGRCm39 Ensembl
GRCm381836,528,066 - 36,556,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,528,147 - 36,556,273 (+)EnsemblGRCm38mm10GRCm38
MGSCv371836,687,806 - 36,704,262 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,654,126 - 36,670,582 (+)NCBIMGSCv36mm8
Celera1836,977,494 - 36,993,958 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
Slc4a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,402,793 - 28,418,638 (+)NCBIGRCr8
mRatBN7.21828,128,740 - 28,144,554 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,128,740 - 28,141,543 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,255,895 - 28,271,705 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,017,979 - 29,033,793 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,353,214 - 28,369,034 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,352,596 - 29,373,603 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,352,749 - 29,365,595 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,059,292 - 29,075,125 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,166,512 - 29,182,720 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11829,193,166 - 29,209,361 (+)NCBI
Celera1827,856,748 - 27,872,556 (+)NCBICelera
Cytogenetic Map18p11NCBI
Slc4a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955418269,598 - 288,145 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955418273,383 - 288,675 (-)NCBIChiLan1.0ChiLan1.0
SLC4A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,575,316 - 35,589,878 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,576,550 - 35,587,980 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,614,675 - 32,628,346 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,032,020 - 36,045,688 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,032,171 - 36,043,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,083,693 - 33,097,361 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,951,171 - 33,964,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,704,160 - 34,717,829 (+)NCBIUU_Cfam_GSD_1.0
Slc4a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,242,902 - 152,256,556 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,354,954 - 9,366,718 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,354,954 - 9,368,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,128,917 - 142,142,662 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,128,502 - 142,143,100 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,068,780 - 148,085,448 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,009,857 - 43,026,123 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,010,484 - 43,026,689 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603434,857,721 - 34,873,876 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc4a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,137,641 - 33,151,287 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474333,137,588 - 33,165,882 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000006734   ⟹   ENSPPAP00000001387
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5141,844,078 - 141,861,739 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000006800   ⟹   ENSPPAP00000001399
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5141,844,107 - 141,857,280 (+)Ensembl
RefSeq Acc Id: XM_055113035   ⟹   XP_054969010
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24135,619,980 - 135,648,093 (+)NCBI
NHGRI_mPanPan15133,759,531 - 133,790,420 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054969010 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001387.1
  ENSPPAP00000001399.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000001399   ⟸   ENSPPAT00000006800
RefSeq Acc Id: ENSPPAP00000001387   ⟸   ENSPPAT00000006734
RefSeq Acc Id: XP_054969010   ⟸   XM_055113035
- UniProtKB: A0A2R8ZFI8 (UniProtKB/TrEMBL)
Protein Domains
Band 3 cytoplasmic   Bicarbonate transporter-like transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000005338 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000006734.1 UniProtKB/TrEMBL
  ENSPPAT00000006800.1 UniProtKB/TrEMBL
Gene3D-CATH Helical hairpin bin UniProtKB/TrEMBL
InterPro Band3_cytoplasmic_dom UniProtKB/TrEMBL
  HCO3_transpt_C UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/TrEMBL
  Na/HCO3_transpt UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/TrEMBL
NCBI Gene SLC4A9 ENTREZGENE
PANTHER ANION EXCHANGE PROTEIN 4 UniProtKB/TrEMBL
  PTHR11453 UniProtKB/TrEMBL
Pfam Band_3_cyto UniProtKB/TrEMBL
  HCO3_cotransp UniProtKB/TrEMBL
PRINTS HCO3TRNSPORT UniProtKB/TrEMBL
  NAHCO3TRSPRT UniProtKB/TrEMBL
Superfamily-SCOP SSF55804 UniProtKB/TrEMBL
UniProt A0A2R8Z8X3_PANPA UniProtKB/TrEMBL
  A0A2R8ZFI8 ENTREZGENE, UniProtKB/TrEMBL