Slc4a9 (solute carrier family 4, sodium bicarbonate cotransporter, member 9) - Rat Genome Database

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Gene: Slc4a9 (solute carrier family 4, sodium bicarbonate cotransporter, member 9) Mus musculus
Analyze
Symbol: Slc4a9
Name: solute carrier family 4, sodium bicarbonate cotransporter, member 9
RGD ID: 1332055
MGI Page MGI
Description: Enables sodium,bicarbonate:chloride antiporter activity and sodium:bicarbonate symporter activity. Involved in saliva secretion. Located in apical part of cell and basolateral plasma membrane. Is expressed in ureteric trunk. Orthologous to human SLC4A9 (solute carrier family 4 member 9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AE; AE 4; AE4; anion exchange protein 4; anion exchanger 4; D630003B07; D630024F24Rik; solute carrier family 4 member 9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,661,117 - 36,689,325 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,661,200 - 36,689,326 (+)EnsemblGRCm39 Ensembl
GRCm381836,528,066 - 36,556,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,528,147 - 36,556,273 (+)EnsemblGRCm38mm10GRCm38
MGSCv371836,687,806 - 36,704,262 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,654,126 - 36,670,582 (+)NCBIMGSCv36mm8
Celera1836,977,494 - 36,993,958 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12225984   PMID:12477932   PMID:14592810   PMID:14610273   PMID:14681479   PMID:16141072   PMID:16141073   PMID:16159312  
PMID:17170027   PMID:17409310   PMID:19121635   PMID:19544066   PMID:21873635   PMID:23610411   PMID:25745107   PMID:27114614   PMID:28705898   PMID:28994389   PMID:34585968   PMID:37236964  


Genomics

Comparative Map Data
Slc4a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,661,117 - 36,689,325 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,661,200 - 36,689,326 (+)EnsemblGRCm39 Ensembl
GRCm381836,528,066 - 36,556,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,528,147 - 36,556,273 (+)EnsemblGRCm38mm10GRCm38
MGSCv371836,687,806 - 36,704,262 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,654,126 - 36,670,582 (+)NCBIMGSCv36mm8
Celera1836,977,494 - 36,993,958 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
SLC4A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,360,194 - 140,375,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,360,194 - 140,375,141 (+)EnsemblGRCh38hg38GRCh38
GRCh375139,739,779 - 139,754,726 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,719,971 - 139,734,906 (+)NCBINCBI36Build 36hg18NCBI36
Build 345139,719,978 - 139,734,770NCBI
Celera5135,816,417 - 135,831,351 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5134,884,947 - 134,899,881 (+)NCBIHuRef
CHM1_15139,172,936 - 139,187,871 (+)NCBICHM1_1
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBIT2T-CHM13v2.0
Slc4a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,402,793 - 28,418,638 (+)NCBIGRCr8
mRatBN7.21828,128,740 - 28,144,554 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,128,740 - 28,141,543 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,255,895 - 28,271,705 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,017,979 - 29,033,793 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,353,214 - 28,369,034 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,352,596 - 29,373,603 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,352,749 - 29,365,595 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,059,292 - 29,075,125 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,166,512 - 29,182,720 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11829,193,166 - 29,209,361 (+)NCBI
Celera1827,856,748 - 27,872,556 (+)NCBICelera
Cytogenetic Map18p11NCBI
Slc4a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955418269,598 - 288,145 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955418273,383 - 288,675 (-)NCBIChiLan1.0ChiLan1.0
SLC4A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,619,980 - 135,648,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15133,759,531 - 133,790,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05135,725,067 - 135,750,666 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15141,844,078 - 141,861,739 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5141,844,078 - 141,861,739 (+)Ensemblpanpan1.1panPan2
SLC4A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,575,316 - 35,589,878 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,576,550 - 35,587,980 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,614,675 - 32,628,346 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,032,020 - 36,045,688 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,032,171 - 36,043,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,083,693 - 33,097,361 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,951,171 - 33,964,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,704,160 - 34,717,829 (+)NCBIUU_Cfam_GSD_1.0
Slc4a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,242,902 - 152,256,556 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,354,954 - 9,366,718 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,354,954 - 9,368,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,128,917 - 142,142,662 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,128,502 - 142,143,100 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,068,780 - 148,085,448 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,009,857 - 43,026,123 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,010,484 - 43,026,689 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603434,857,721 - 34,873,876 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc4a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,137,641 - 33,151,287 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474333,137,588 - 33,165,882 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc4a9
689 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:360
Count of miRNA genes:158
Interacting mature miRNAs:171
Transcripts:ENSMUST00000074298, ENSMUST00000115694
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
11041903Lmr27_mleishmaniasis resistance 27 (mouse)183618756745109518Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse

Markers in Region
Slc4a9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18B2UniSTS
cM Map1819.46UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC147220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC113179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC113785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000074298   ⟹   ENSMUSP00000073910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,661,210 - 36,674,346 (+)Ensembl
GRCm38.p6 Ensembl1836,528,157 - 36,541,293 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115694   ⟹   ENSMUSP00000111358
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,661,210 - 36,674,346 (+)Ensembl
GRCm38.p6 Ensembl1836,528,157 - 36,541,293 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235181   ⟹   ENSMUSP00000157460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,661,205 - 36,677,661 (+)Ensembl
GRCm38.p6 Ensembl1836,528,152 - 36,544,608 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,674,545 - 36,677,667 (+)Ensembl
GRCm38.p6 Ensembl1836,541,492 - 36,544,614 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,664,088 - 36,666,806 (+)Ensembl
GRCm38.p6 Ensembl1836,531,035 - 36,533,753 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236124   ⟹   ENSMUSP00000157862
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,661,202 - 36,677,649 (+)Ensembl
GRCm38.p6 Ensembl1836,528,149 - 36,544,596 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236126   ⟹   ENSMUSP00000158410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,661,210 - 36,677,572 (+)Ensembl
GRCm38.p6 Ensembl1836,528,157 - 36,544,519 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236779   ⟹   ENSMUSP00000158033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,661,204 - 36,689,325 (+)Ensembl
GRCm38.p6 Ensembl1836,528,151 - 36,556,272 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237174   ⟹   ENSMUSP00000158071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,661,200 - 36,677,572 (+)Ensembl
GRCm38.p6 Ensembl1836,528,147 - 36,544,519 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237243
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,661,200 - 36,669,173 (+)Ensembl
GRCm38.p6 Ensembl1836,528,147 - 36,536,120 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237595   ⟹   ENSMUSP00000158130
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,662,280 - 36,677,661 (+)Ensembl
GRCm38.p6 Ensembl1836,529,227 - 36,544,608 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,661,204 - 36,689,326 (+)Ensembl
GRCm38.p6 Ensembl1836,528,151 - 36,556,273 (+)Ensembl
RefSeq Acc Id: NM_001271544   ⟹   NP_001258473
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,205 - 36,677,661 (+)NCBI
GRCm381836,528,152 - 36,544,608 (+)NCBI
Celera1836,977,494 - 37,006,051 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271545   ⟹   NP_001258474
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,205 - 36,677,661 (+)NCBI
GRCm381836,528,152 - 36,544,608 (+)NCBI
Celera1836,977,494 - 37,006,051 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271546   ⟹   NP_001258475
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,205 - 36,677,661 (+)NCBI
GRCm381836,528,152 - 36,544,608 (+)NCBI
Celera1836,977,494 - 37,006,051 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271547   ⟹   NP_001258476
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,205 - 36,689,325 (+)NCBI
GRCm381836,528,152 - 36,556,272 (+)NCBI
Celera1836,977,494 - 37,006,051 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172830   ⟹   NP_766418
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,205 - 36,677,661 (+)NCBI
GRCm381836,528,152 - 36,544,608 (+)NCBI
MGSCv371836,687,806 - 36,704,262 (+)RGD
Celera1836,977,494 - 37,006,051 (+)NCBI
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525906   ⟹   XP_006525969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,121 - 36,677,657 (+)NCBI
GRCm381836,528,070 - 36,544,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006525907   ⟹   XP_006525970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,117 - 36,677,657 (+)NCBI
GRCm381836,528,066 - 36,544,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006525908   ⟹   XP_006525971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,119 - 36,677,657 (+)NCBI
GRCm381836,528,068 - 36,544,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006525909   ⟹   XP_006525972
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,119 - 36,677,657 (+)NCBI
GRCm381836,528,068 - 36,544,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006525910   ⟹   XP_006525973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,119 - 36,677,657 (+)NCBI
GRCm381836,528,068 - 36,544,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006525911   ⟹   XP_006525974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,120 - 36,677,657 (+)NCBI
GRCm381836,528,069 - 36,544,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011246919   ⟹   XP_011245221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,121 - 36,677,657 (+)NCBI
GRCm381836,528,070 - 36,544,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011246920   ⟹   XP_011245222
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,120 - 36,677,657 (+)NCBI
GRCm381836,528,069 - 36,544,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017317896   ⟹   XP_017173385
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,661,120 - 36,677,657 (+)NCBI
GRCm381836,528,068 - 36,544,604 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001258473 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258474 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258475 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258476 (Get FASTA)   NCBI Sequence Viewer  
  NP_766418 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525969 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525970 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525971 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525972 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525973 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525974 (Get FASTA)   NCBI Sequence Viewer  
  XP_011245221 (Get FASTA)   NCBI Sequence Viewer  
  XP_011245222 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173385 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A0A494BA31 (Get FASTA)   NCBI Sequence Viewer  
  AAI13180 (Get FASTA)   NCBI Sequence Viewer  
  AAI13786 (Get FASTA)   NCBI Sequence Viewer  
  BAC39407 (Get FASTA)   NCBI Sequence Viewer  
  BAE25101 (Get FASTA)   NCBI Sequence Viewer  
  EDK97160 (Get FASTA)   NCBI Sequence Viewer  
  EDK97161 (Get FASTA)   NCBI Sequence Viewer  
  EDK97162 (Get FASTA)   NCBI Sequence Viewer  
  EDK97163 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000073910.7
  ENSMUSP00000111358.3
  ENSMUSP00000157460
  ENSMUSP00000157460.2
  ENSMUSP00000157862
  ENSMUSP00000157862.2
  ENSMUSP00000158033
  ENSMUSP00000158033.2
  ENSMUSP00000158071
  ENSMUSP00000158071.2
  ENSMUSP00000158130.2
  ENSMUSP00000158410
  ENSMUSP00000158410.2
Reference Protein Sequences
RefSeq Acc Id: NP_766418   ⟸   NM_172830
- Peptide Label: isoform 3
- UniProtKB: Q8BUG8 (UniProtKB/TrEMBL),   Q14DJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258476   ⟸   NM_001271547
- Peptide Label: isoform 5
- UniProtKB: Q3UQE1 (UniProtKB/TrEMBL),   A0A494BAI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258473   ⟸   NM_001271544
- Peptide Label: isoform 1
- UniProtKB: A0A494BA31 (UniProtKB/TrEMBL),   Q14DJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258474   ⟸   NM_001271545
- Peptide Label: isoform 2
- UniProtKB: E9PUP3 (UniProtKB/TrEMBL),   Q14DJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258475   ⟸   NM_001271546
- Peptide Label: isoform 4
- UniProtKB: A0A494BBC3 (UniProtKB/TrEMBL),   Q14DJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525970   ⟸   XM_006525907
- Peptide Label: isoform X2
- UniProtKB: Q14DJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525973   ⟸   XM_006525910
- Peptide Label: isoform X5
- UniProtKB: Q3UQE1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525971   ⟸   XM_006525908
- Peptide Label: isoform X3
- UniProtKB: Q14DJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525972   ⟸   XM_006525909
- Peptide Label: isoform X4
- UniProtKB: Q14DJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525969   ⟸   XM_006525906
- Peptide Label: isoform X1
- UniProtKB: Q14DJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525974   ⟸   XM_006525911
- Peptide Label: isoform X8
- UniProtKB: Q3UQE1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011245222   ⟸   XM_011246920
- Peptide Label: isoform X9
- UniProtKB: Q3UQE1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011245221   ⟸   XM_011246919
- Peptide Label: isoform X6
- UniProtKB: A0A494BAI0 (UniProtKB/TrEMBL),   Q3UQE1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173385   ⟸   XM_017317896
- Peptide Label: isoform X7
- UniProtKB: Q14DJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000158071   ⟸   ENSMUST00000237174
RefSeq Acc Id: ENSMUSP00000158130   ⟸   ENSMUST00000237595
RefSeq Acc Id: ENSMUSP00000158033   ⟸   ENSMUST00000236779
RefSeq Acc Id: ENSMUSP00000157862   ⟸   ENSMUST00000236124
RefSeq Acc Id: ENSMUSP00000158410   ⟸   ENSMUST00000236126
RefSeq Acc Id: ENSMUSP00000073910   ⟸   ENSMUST00000074298
RefSeq Acc Id: ENSMUSP00000111358   ⟸   ENSMUST00000115694
RefSeq Acc Id: ENSMUSP00000157460   ⟸   ENSMUST00000235181
Protein Domains
Band 3 cytoplasmic   Bicarbonate transporter-like transmembrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A494BA31-F1-model_v2 AlphaFold A0A494BA31 1-952 view protein structure

Promoters
RGD ID:13677462
Promoter ID:EPDNEW_M22880
Type:single initiation site
Name:Slc4a9_1
Description:Mus musculus solute carrier family 4, sodium bicarbonate cotransporter,member 9 , transcript variant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381836,528,150 - 36,528,210EPDNEW
RGD ID:6829538
Promoter ID:MM_KWN:24963
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:ENSMUST00000074298,   ENSMUST00000097616,   ENSMUST00000115694,   NM_172830,   UC008ENO.1,   UC008ENP.1,   UC008ENQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361836,687,171 - 36,687,671 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443384 AgrOrtholog
Ensembl Genes ENSMUSG00000024485 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000074298.13 UniProtKB/TrEMBL
  ENSMUST00000115694.3 UniProtKB/TrEMBL
  ENSMUST00000235181 ENTREZGENE
  ENSMUST00000235181.2 UniProtKB/TrEMBL
  ENSMUST00000236124 ENTREZGENE
  ENSMUST00000236124.2 UniProtKB/Swiss-Prot
  ENSMUST00000236126 ENTREZGENE
  ENSMUST00000236126.2 UniProtKB/TrEMBL
  ENSMUST00000236779 ENTREZGENE
  ENSMUST00000236779.2 UniProtKB/TrEMBL
  ENSMUST00000237174 ENTREZGENE
  ENSMUST00000237174.2 UniProtKB/TrEMBL
  ENSMUST00000237595.2 UniProtKB/TrEMBL
Gene3D-CATH Helical hairpin bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Band3_cytoplasmic_dom UniProtKB/Swiss-Prot
  HCO3_transpt-like_TM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_transpt_cyt UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/HCO3_transpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:240215 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2443384 ENTREZGENE
NCBI Gene 240215 ENTREZGENE
PANTHER ANION EXCHANGE PROTEIN UniProtKB/Swiss-Prot
  ANION EXCHANGE PROTEIN 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/TrEMBL
Pfam Band_3_cyto UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_cotransp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc4a9 PhenoGen
PRINTS HCO3TRNSPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAHCO3TRSPRT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Phoshotransferase/anion transport protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494BA31 ENTREZGENE
  A0A494BAI0 ENTREZGENE, UniProtKB/TrEMBL
  A0A494BAK5_MOUSE UniProtKB/TrEMBL
  A0A494BBC3 ENTREZGENE, UniProtKB/TrEMBL
  B3A4_MOUSE UniProtKB/Swiss-Prot
  E9PUP3 ENTREZGENE, UniProtKB/TrEMBL
  Q14CH2_MOUSE UniProtKB/TrEMBL
  Q14DJ1 ENTREZGENE, UniProtKB/TrEMBL
  Q3UQE1 ENTREZGENE, UniProtKB/TrEMBL
  Q8BUG8 ENTREZGENE, UniProtKB/TrEMBL