SLC4A9 (solute carrier family 4 member 9) - Rat Genome Database

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Gene: SLC4A9 (solute carrier family 4 member 9) Homo sapiens
Analyze
Symbol: SLC4A9
Name: solute carrier family 4 member 9
RGD ID: 730837
HGNC Page HGNC:11035
Description: Predicted to enable chloride:bicarbonate antiporter activity and sodium:bicarbonate symporter activity. Predicted to be involved in bicarbonate transport; regulation of intracellular pH; and sodium ion transmembrane transport. Predicted to be located in apical part of cell and membrane. Predicted to be active in basolateral plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AE 4; AE4; anion exchange protein 4; anion exchanger 4; sodium bicarbonate cotransporter 5; solute carrier family 4, sodium bicarbonate cotransporter, member 9; solute carrier family 4, sodium bicarbonate cotransporter-like, member 9
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,360,194 - 140,375,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,360,194 - 140,375,141 (+)EnsemblGRCh38hg38GRCh38
GRCh375139,739,779 - 139,754,726 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,719,971 - 139,734,906 (+)NCBINCBI36Build 36hg18NCBI36
Build 345139,719,978 - 139,734,770NCBI
Celera5135,816,417 - 135,831,351 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5134,884,947 - 134,899,881 (+)NCBIHuRef
CHM1_15139,172,936 - 139,187,871 (+)NCBICHM1_1
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11302728   PMID:11305939   PMID:12477932   PMID:21873635   PMID:27114614  


Genomics

Comparative Map Data
SLC4A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,360,194 - 140,375,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,360,194 - 140,375,141 (+)EnsemblGRCh38hg38GRCh38
GRCh375139,739,779 - 139,754,726 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,719,971 - 139,734,906 (+)NCBINCBI36Build 36hg18NCBI36
Build 345139,719,978 - 139,734,770NCBI
Celera5135,816,417 - 135,831,351 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5134,884,947 - 134,899,881 (+)NCBIHuRef
CHM1_15139,172,936 - 139,187,871 (+)NCBICHM1_1
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBIT2T-CHM13v2.0
Slc4a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,661,117 - 36,689,325 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,661,200 - 36,689,326 (+)EnsemblGRCm39 Ensembl
GRCm381836,528,066 - 36,556,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,528,147 - 36,556,273 (+)EnsemblGRCm38mm10GRCm38
MGSCv371836,687,806 - 36,704,262 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,654,126 - 36,670,582 (+)NCBIMGSCv36mm8
Celera1836,977,494 - 36,993,958 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
Slc4a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,402,793 - 28,418,638 (+)NCBIGRCr8
mRatBN7.21828,128,740 - 28,144,554 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,128,740 - 28,141,543 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,255,895 - 28,271,705 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,017,979 - 29,033,793 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,353,214 - 28,369,034 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,352,596 - 29,373,603 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,352,749 - 29,365,595 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,059,292 - 29,075,125 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,166,512 - 29,182,720 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11829,193,166 - 29,209,361 (+)NCBI
Celera1827,856,748 - 27,872,556 (+)NCBICelera
Cytogenetic Map18p11NCBI
Slc4a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955418269,598 - 288,145 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955418273,383 - 288,675 (-)NCBIChiLan1.0ChiLan1.0
SLC4A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,619,980 - 135,648,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15133,759,531 - 133,790,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05135,725,067 - 135,750,666 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15141,844,078 - 141,861,739 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5141,844,078 - 141,861,739 (+)Ensemblpanpan1.1panPan2
SLC4A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,575,316 - 35,589,878 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,576,550 - 35,587,980 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,614,675 - 32,628,346 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,032,020 - 36,045,688 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,032,171 - 36,043,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,083,693 - 33,097,361 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,951,171 - 33,964,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,704,160 - 34,717,829 (+)NCBIUU_Cfam_GSD_1.0
Slc4a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,242,902 - 152,256,556 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,354,954 - 9,366,718 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,354,954 - 9,368,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,128,917 - 142,142,662 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,128,502 - 142,143,100 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,068,780 - 148,085,448 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,009,857 - 43,026,123 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,010,484 - 43,026,689 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603434,857,721 - 34,873,876 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc4a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,137,641 - 33,151,287 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474333,137,588 - 33,165,882 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC4A9
53 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 5q23.3-33.2(chr5:130860928-155321811)x3 copy number gain See cases [RCV000051193] Chr5:130860928..155321811 [GRCh38]
Chr5:130196621..154701371 [GRCh37]
Chr5:130224520..154681564 [NCBI36]
Chr5:5q23.3-33.2
pathogenic
GRCh38/hg38 5q31.2-32(chr5:138871137-145812309)x1 copy number loss See cases [RCV000052142] Chr5:138871137..145812309 [GRCh38]
Chr5:138206826..145191872 [GRCh37]
Chr5:138234725..145172065 [NCBI36]
Chr5:5q31.2-32
pathogenic
GRCh38/hg38 5q21.3-33.2(chr5:106619588-156124387)x1 copy number loss See cases [RCV000053524] Chr5:106619588..156124387 [GRCh38]
Chr5:105955289..155551397 [GRCh37]
Chr5:105983188..155483975 [NCBI36]
Chr5:5q21.3-33.2
pathogenic
NM_031467.2(SLC4A9):c.707C>T (p.Ser236Phe) single nucleotide variant Malignant melanoma [RCV000066660] Chr5:140362162 [GRCh38]
Chr5:139741747 [GRCh37]
Chr5:139721931 [NCBI36]
Chr5:5q31.3
not provided
NM_031467.2(SLC4A9):c.1647A>C (p.Pro549=) single nucleotide variant Malignant melanoma [RCV000066661] Chr5:140364621 [GRCh38]
Chr5:139744206 [GRCh37]
Chr5:139724390 [NCBI36]
Chr5:5q31.3
not provided
GRCh38/hg38 5q31.2-31.3(chr5:137836682-140696361)x3 copy number gain See cases [RCV000134725] Chr5:137836682..140696361 [GRCh38]
Chr5:137172371..140075946 [GRCh37]
Chr5:137200270..140056130 [NCBI36]
Chr5:5q31.2-31.3
pathogenic
GRCh38/hg38 5q23.3-33.2(chr5:129847794-153353546)x3 copy number gain See cases [RCV000138808] Chr5:129847794..153353546 [GRCh38]
Chr5:129183487..152733106 [GRCh37]
Chr5:129211386..152713299 [NCBI36]
Chr5:5q23.3-33.2
pathogenic
GRCh38/hg38 5q31.2-31.3(chr5:138942857-144605017)x3 copy number gain See cases [RCV000142806] Chr5:138942857..144605017 [GRCh38]
Chr5:138278546..143984580 [GRCh37]
Chr5:138306445..143964773 [NCBI36]
Chr5:5q31.2-31.3
uncertain significance
GRCh37/hg19 5q15-35.3(chr5:94844077-178830410)x3 copy number gain not provided [RCV000487658] Chr5:94844077..178830410 [GRCh37]
Chr5:5q15-35.3
likely benign
NC_000005.9:g.(?_86400000)_(154000000_?)del deletion Familial adenomatous polyposis 1 [RCV002231249]|Hereditary cancer-predisposing syndrome [RCV000554476] Chr5:86400000..154000000 [GRCh37]
Chr5:5q14.3-33.2
pathogenic
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910)x3 copy number gain See cases [RCV000449349] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3
pathogenic
GRCh37/hg19 5q21.3-35.3(chr5:106716357-180687338)x3 copy number gain See cases [RCV000448245] Chr5:106716357..180687338 [GRCh37]
Chr5:5q21.3-35.3
pathogenic
GRCh37/hg19 5p15.1-q35.2(chr5:17628741-176575720)x1 copy number loss See cases [RCV000511978] Chr5:17628741..176575720 [GRCh37]
Chr5:5p15.1-q35.2
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)x3 copy number gain See cases [RCV000512039] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789) copy number gain See cases [RCV000510723] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
NM_031467.3(SLC4A9):c.2237C>T (p.Ala746Val) single nucleotide variant Inborn genetic diseases [RCV003252625] Chr5:140367781 [GRCh38]
Chr5:139747366 [GRCh37]
Chr5:5q31.3
likely benign
NM_031467.3(SLC4A9):c.500G>A (p.Cys167Tyr) single nucleotide variant Inborn genetic diseases [RCV003303850] Chr5:140361362 [GRCh38]
Chr5:139740947 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1882C>T (p.Arg628Cys) single nucleotide variant Inborn genetic diseases [RCV003275017] Chr5:140366005 [GRCh38]
Chr5:139745590 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1477A>G (p.Ser493Gly) single nucleotide variant Inborn genetic diseases [RCV003275623] Chr5:140364451 [GRCh38]
Chr5:139744036 [GRCh37]
Chr5:5q31.3
uncertain significance
GRCh37/hg19 5q31.2-31.3(chr5:139147238-141540491)x1 copy number loss not provided [RCV000682600] Chr5:139147238..141540491 [GRCh37]
Chr5:5q31.2-31.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:25328-180693344)x3 copy number gain not provided [RCV000744323] Chr5:25328..180693344 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:13648-180905029)x3 copy number gain not provided [RCV000744317] Chr5:13648..180905029 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
NM_031467.3(SLC4A9):c.933G>A (p.Pro311=) single nucleotide variant not provided [RCV000918165] Chr5:140363037 [GRCh38]
Chr5:139742622 [GRCh37]
Chr5:5q31.3
benign
Single allele deletion Neurodevelopmental disorder [RCV000787436] Chr5:14685137..149511942 [GRCh37]
Chr5:5p15.2-q32
uncertain significance
NM_031467.3(SLC4A9):c.49C>T (p.Pro17Ser) single nucleotide variant Inborn genetic diseases [RCV003243587] Chr5:140360285 [GRCh38]
Chr5:139739870 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.113A>C (p.Asp38Ala) single nucleotide variant Inborn genetic diseases [RCV003248357] Chr5:140360349 [GRCh38]
Chr5:139739934 [GRCh37]
Chr5:5q31.3
uncertain significance
GRCh37/hg19 5q31.2-31.3(chr5:139447779-140047037)x3 copy number gain not provided [RCV000846756] Chr5:139447779..140047037 [GRCh37]
Chr5:5q31.2-31.3
uncertain significance
NM_031467.3(SLC4A9):c.1899+9C>T single nucleotide variant not provided [RCV000902577] Chr5:140366031 [GRCh38]
Chr5:139745616 [GRCh37]
Chr5:5q31.3
benign
NM_031467.3(SLC4A9):c.1651+9G>C single nucleotide variant not provided [RCV000975080] Chr5:140364634 [GRCh38]
Chr5:139744219 [GRCh37]
Chr5:5q31.3
benign
NC_000005.9:g.(?_136633338)_(140998481_?)dup duplication PURA-related severe neonatal hypotonia-seizures-encephalopathy syndrome [RCV001339088] Chr5:136633338..140998481 [GRCh37]
Chr5:5q31.2-31.3
uncertain significance
GRCh37/hg19 5q31.2-31.3(chr5:139493717-140517454)x1 copy number loss PURA-related severe neonatal hypotonia-seizures-encephalopathy syndrome [RCV001801202] Chr5:139493717..140517454 [GRCh37]
Chr5:5q31.2-31.3
pathogenic
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910) copy number gain not specified [RCV002053526] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3
pathogenic
NC_000005.9:g.(?_136957787)_(140078137_?)dup duplication PURA-related severe neonatal hypotonia-seizures-encephalopathy syndrome [RCV003116437] Chr5:136957787..140078137 [GRCh37]
Chr5:5q31.2-31.3
uncertain significance
NM_031467.3(SLC4A9):c.1796C>T (p.Thr599Ile) single nucleotide variant Inborn genetic diseases [RCV003262178] Chr5:140365919 [GRCh38]
Chr5:139745504 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2660T>C (p.Phe887Ser) single nucleotide variant Inborn genetic diseases [RCV002860178] Chr5:140371614 [GRCh38]
Chr5:139751199 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.806C>T (p.Pro269Leu) single nucleotide variant Inborn genetic diseases [RCV002687690] Chr5:140362531 [GRCh38]
Chr5:139742116 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.272G>A (p.Arg91Gln) single nucleotide variant Inborn genetic diseases [RCV002837333] Chr5:140360853 [GRCh38]
Chr5:139740438 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.206C>T (p.Ala69Val) single nucleotide variant Inborn genetic diseases [RCV002997871] Chr5:140360442 [GRCh38]
Chr5:139740027 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2641A>C (p.Thr881Pro) single nucleotide variant Inborn genetic diseases [RCV002840910] Chr5:140371595 [GRCh38]
Chr5:139751180 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2029C>T (p.Arg677Cys) single nucleotide variant Inborn genetic diseases [RCV002753713] Chr5:140367435 [GRCh38]
Chr5:139747020 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2056G>C (p.Ala686Pro) single nucleotide variant Inborn genetic diseases [RCV002836898] Chr5:140367462 [GRCh38]
Chr5:139747047 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2786T>C (p.Leu929Pro) single nucleotide variant Inborn genetic diseases [RCV002706809] Chr5:140372357 [GRCh38]
Chr5:139751942 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1421T>C (p.Leu474Pro) single nucleotide variant Inborn genetic diseases [RCV002799488] Chr5:140364395 [GRCh38]
Chr5:139743980 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.934C>T (p.Pro312Ser) single nucleotide variant Inborn genetic diseases [RCV002692770] Chr5:140363038 [GRCh38]
Chr5:139742623 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.271C>T (p.Arg91Trp) single nucleotide variant Inborn genetic diseases [RCV002873636] Chr5:140360852 [GRCh38]
Chr5:139740437 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1984C>G (p.Pro662Ala) single nucleotide variant Inborn genetic diseases [RCV002874282] Chr5:140366235 [GRCh38]
Chr5:139745820 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1042C>T (p.Pro348Ser) single nucleotide variant Inborn genetic diseases [RCV002789289] Chr5:140363518 [GRCh38]
Chr5:139743103 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.512C>T (p.Thr171Ile) single nucleotide variant Inborn genetic diseases [RCV002930626] Chr5:140361814 [GRCh38]
Chr5:139741399 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.865G>C (p.Asp289His) single nucleotide variant Inborn genetic diseases [RCV002641170] Chr5:140362969 [GRCh38]
Chr5:139742554 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.928C>A (p.Pro310Thr) single nucleotide variant Inborn genetic diseases [RCV002744494] Chr5:140363032 [GRCh38]
Chr5:139742617 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1474G>C (p.Ala492Pro) single nucleotide variant Inborn genetic diseases [RCV002644763] Chr5:140364448 [GRCh38]
Chr5:139744033 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.98C>T (p.Thr33Ile) single nucleotide variant Inborn genetic diseases [RCV002787985] Chr5:140360334 [GRCh38]
Chr5:139739919 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1778G>A (p.Arg593His) single nucleotide variant Inborn genetic diseases [RCV002709289] Chr5:140365901 [GRCh38]
Chr5:139745486 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2692C>G (p.Arg898Gly) single nucleotide variant Inborn genetic diseases [RCV002648584] Chr5:140372263 [GRCh38]
Chr5:139751848 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1418G>A (p.Arg473His) single nucleotide variant Inborn genetic diseases [RCV002965512] Chr5:140364392 [GRCh38]
Chr5:139743977 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1711G>A (p.Asp571Asn) single nucleotide variant Inborn genetic diseases [RCV002854980] Chr5:140365834 [GRCh38]
Chr5:139745419 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2710G>A (p.Val904Ile) single nucleotide variant Inborn genetic diseases [RCV002718802] Chr5:140372281 [GRCh38]
Chr5:139751866 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2393C>T (p.Thr798Ile) single nucleotide variant Inborn genetic diseases [RCV003008802] Chr5:140368625 [GRCh38]
Chr5:139748210 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1250C>T (p.Ala417Val) single nucleotide variant Inborn genetic diseases [RCV002718917] Chr5:140363898 [GRCh38]
Chr5:139743483 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.967C>G (p.Pro323Ala) single nucleotide variant Inborn genetic diseases [RCV002714041] Chr5:140363443 [GRCh38]
Chr5:139743028 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2866A>C (p.Ile956Leu) single nucleotide variant Inborn genetic diseases [RCV002656477] Chr5:140372784 [GRCh38]
Chr5:139752369 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2338A>C (p.Asn780His) single nucleotide variant Inborn genetic diseases [RCV002724635] Chr5:140367882 [GRCh38]
Chr5:139747467 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.388G>A (p.Val130Met) single nucleotide variant Inborn genetic diseases [RCV002657444] Chr5:140360969 [GRCh38]
Chr5:139740554 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.540G>T (p.Glu180Asp) single nucleotide variant Inborn genetic diseases [RCV002944705] Chr5:140361842 [GRCh38]
Chr5:139741427 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2758G>C (p.Glu920Gln) single nucleotide variant Inborn genetic diseases [RCV003192502] Chr5:140372329 [GRCh38]
Chr5:139751914 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.905G>A (p.Arg302Gln) single nucleotide variant Inborn genetic diseases [RCV003200751] Chr5:140363009 [GRCh38]
Chr5:139742594 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1816T>C (p.Phe606Leu) single nucleotide variant Inborn genetic diseases [RCV003198720] Chr5:140365939 [GRCh38]
Chr5:139745524 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1489C>T (p.Arg497Cys) single nucleotide variant Inborn genetic diseases [RCV003212749] Chr5:140364463 [GRCh38]
Chr5:139744048 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1838C>T (p.Thr613Ile) single nucleotide variant Inborn genetic diseases [RCV003193896] Chr5:140365961 [GRCh38]
Chr5:139745546 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2296C>G (p.Leu766Val) single nucleotide variant Inborn genetic diseases [RCV003201372] Chr5:140367840 [GRCh38]
Chr5:139747425 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1169C>T (p.Ser390Leu) single nucleotide variant Inborn genetic diseases [RCV003198940] Chr5:140363817 [GRCh38]
Chr5:139743402 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1445C>A (p.Thr482Asn) single nucleotide variant Inborn genetic diseases [RCV003212137] Chr5:140364419 [GRCh38]
Chr5:139744004 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.2326G>A (p.Gly776Arg) single nucleotide variant Inborn genetic diseases [RCV003201184] Chr5:140367870 [GRCh38]
Chr5:139747455 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.1759C>T (p.Arg587Trp) single nucleotide variant Inborn genetic diseases [RCV003189396] Chr5:140365882 [GRCh38]
Chr5:139745467 [GRCh37]
Chr5:5q31.3
uncertain significance
NM_031467.3(SLC4A9):c.941G>A (p.Cys314Tyr) single nucleotide variant Inborn genetic diseases [RCV003305123] Chr5:140363045 [GRCh38]
Chr5:139742630 [GRCh37]
Chr5:5q31.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1452
Count of miRNA genes:550
Interacting mature miRNAs:599
Transcripts:ENST00000230993, ENST00000432095, ENST00000504742, ENST00000506545, ENST00000506757, ENST00000507527, ENST00000514849
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 151 2
Low 30 139 549 12 180 11 126 11 925 59 503 488 2 151 80
Below cutoff 2207 2596 945 416 1377 264 3906 1937 2746 145 813 1015 162 1030 2467 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_032676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001258426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001258427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001258428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005268521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011537694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001742292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001742294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB032762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF313465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF332961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF336237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC136262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC143602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB046220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000432095   ⟹   ENSP00000410056
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5140,360,210 - 140,375,002 (+)Ensembl
RefSeq Acc Id: ENST00000504742
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5140,371,449 - 140,374,929 (+)Ensembl
RefSeq Acc Id: ENST00000506545   ⟹   ENSP00000422855
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5140,360,210 - 140,374,844 (+)Ensembl
RefSeq Acc Id: ENST00000506757   ⟹   ENSP00000424424
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5140,360,194 - 140,375,141 (+)Ensembl
RefSeq Acc Id: ENST00000507527   ⟹   ENSP00000427661
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5140,360,215 - 140,375,008 (+)Ensembl
RefSeq Acc Id: ENST00000514849
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5140,365,857 - 140,367,728 (+)Ensembl
RefSeq Acc Id: NM_001258426   ⟹   NP_001245355
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
GRCh375139,739,787 - 139,754,722 (+)NCBI
HuRef5134,884,947 - 134,899,881 (+)NCBI
CHM1_15139,172,936 - 139,187,871 (+)NCBI
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001258427   ⟹   NP_001245356
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
GRCh375139,739,787 - 139,754,722 (+)NCBI
HuRef5134,884,947 - 134,899,881 (+)NCBI
CHM1_15139,172,936 - 139,187,871 (+)NCBI
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001258428   ⟹   NP_001245357
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
GRCh375139,739,787 - 139,754,722 (+)NCBI
HuRef5134,884,947 - 134,899,881 (+)NCBI
CHM1_15139,172,936 - 139,187,871 (+)NCBI
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
Sequence:
RefSeq Acc Id: NM_031467   ⟹   NP_113655
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
GRCh375139,739,787 - 139,754,722 (+)RGD
Build 365139,719,971 - 139,734,906 (+)NCBI Archive
Celera5135,816,417 - 135,831,351 (+)RGD
HuRef5134,884,947 - 134,899,881 (+)ENTREZGENE
CHM1_15139,172,936 - 139,187,871 (+)NCBI
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005268521   ⟹   XP_005268578
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
GRCh375139,739,787 - 139,754,722 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011537694   ⟹   XP_011535996
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,371,438 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009933   ⟹   XP_016865422
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009934   ⟹   XP_016865423
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009935   ⟹   XP_016865424
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009936   ⟹   XP_016865425
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009937   ⟹   XP_016865426
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009938   ⟹   XP_016865427
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009939   ⟹   XP_016865428
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009940   ⟹   XP_016865429
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009941   ⟹   XP_016865430
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009942   ⟹   XP_016865431
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047417794   ⟹   XP_047273750
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,372,843 (+)NCBI
RefSeq Acc Id: XM_047417795   ⟹   XP_047273751
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,372,843 (+)NCBI
RefSeq Acc Id: XM_047417796   ⟹   XP_047273752
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,375,141 (+)NCBI
RefSeq Acc Id: XM_047417797   ⟹   XP_047273753
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,194 - 140,372,843 (+)NCBI
RefSeq Acc Id: XM_054353592   ⟹   XP_054209567
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
RefSeq Acc Id: XM_054353593   ⟹   XP_054209568
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
RefSeq Acc Id: XM_054353594   ⟹   XP_054209569
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
RefSeq Acc Id: XM_054353595   ⟹   XP_054209570
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,898,277 (+)NCBI
RefSeq Acc Id: XM_054353596   ⟹   XP_054209571
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,898,277 (+)NCBI
RefSeq Acc Id: XM_054353597   ⟹   XP_054209572
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
RefSeq Acc Id: XM_054353598   ⟹   XP_054209573
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
RefSeq Acc Id: XM_054353599   ⟹   XP_054209574
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
RefSeq Acc Id: XM_054353600   ⟹   XP_054209575
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
RefSeq Acc Id: XM_054353601   ⟹   XP_054209576
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
RefSeq Acc Id: XM_054353602   ⟹   XP_054209577
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,900,574 (+)NCBI
RefSeq Acc Id: XM_054353603   ⟹   XP_054209578
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,896,872 (+)NCBI
RefSeq Acc Id: XM_054353604   ⟹   XP_054209579
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,898,277 (+)NCBI
RefSeq Acc Id: XM_054353605   ⟹   XP_054209580
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05140,885,627 - 140,898,277 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001245355 (Get FASTA)   NCBI Sequence Viewer  
  NP_001245356 (Get FASTA)   NCBI Sequence Viewer  
  NP_001245357 (Get FASTA)   NCBI Sequence Viewer  
  NP_113655 (Get FASTA)   NCBI Sequence Viewer  
  XP_005268578 (Get FASTA)   NCBI Sequence Viewer  
  XP_011535996 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865422 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865423 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865424 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865425 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865426 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865427 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865428 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865429 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865430 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865431 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273750 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273751 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273752 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273753 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209567 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209568 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209569 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209570 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209571 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209572 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209573 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209574 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209575 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209576 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209577 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209578 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209579 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209580 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI36263 (Get FASTA)   NCBI Sequence Viewer  
  AAI43603 (Get FASTA)   NCBI Sequence Viewer  
  AAK16733 (Get FASTA)   NCBI Sequence Viewer  
  AAK28832 (Get FASTA)   NCBI Sequence Viewer  
  AAK69625 (Get FASTA)   NCBI Sequence Viewer  
  BAA93010 (Get FASTA)   NCBI Sequence Viewer  
  EAW62061 (Get FASTA)   NCBI Sequence Viewer  
  EAW62062 (Get FASTA)   NCBI Sequence Viewer  
  EAW62063 (Get FASTA)   NCBI Sequence Viewer  
  EAW62064 (Get FASTA)   NCBI Sequence Viewer  
  EAW62065 (Get FASTA)   NCBI Sequence Viewer  
  EAW62066 (Get FASTA)   NCBI Sequence Viewer  
  EAW62067 (Get FASTA)   NCBI Sequence Viewer  
  EAW62068 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000410056
  ENSP00000410056.2
  ENSP00000422855
  ENSP00000422855.1
  ENSP00000424424
  ENSP00000424424.1
  ENSP00000427661
  ENSP00000427661.1
GenBank Protein Q96Q91 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_113655   ⟸   NM_031467
- Peptide Label: isoform 2
- UniProtKB: Q96Q91 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001245357   ⟸   NM_001258428
- Peptide Label: isoform 1
- UniProtKB: Q9BXF2 (UniProtKB/Swiss-Prot),   Q96RM5 (UniProtKB/Swiss-Prot),   E9PDK1 (UniProtKB/Swiss-Prot),   D3DQD6 (UniProtKB/Swiss-Prot),   D3DQD5 (UniProtKB/Swiss-Prot),   D3DQD4 (UniProtKB/Swiss-Prot),   B7ZL63 (UniProtKB/Swiss-Prot),   Q9BXN3 (UniProtKB/Swiss-Prot),   Q96Q91 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001245356   ⟸   NM_001258427
- Peptide Label: isoform 4
- UniProtKB: Q96Q91 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001245355   ⟸   NM_001258426
- Peptide Label: isoform 3
- UniProtKB: Q96Q91 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005268578   ⟸   XM_005268521
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011535996   ⟸   XM_011537694
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_016865422   ⟸   XM_017009933
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016865429   ⟸   XM_017009940
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_016865423   ⟸   XM_017009934
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_016865427   ⟸   XM_017009938
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_016865430   ⟸   XM_017009941
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_016865424   ⟸   XM_017009935
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_016865431   ⟸   XM_017009942
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_016865426   ⟸   XM_017009937
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_016865425   ⟸   XM_017009936
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_016865428   ⟸   XM_017009939
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSP00000424424   ⟸   ENST00000506757
RefSeq Acc Id: ENSP00000422855   ⟸   ENST00000506545
RefSeq Acc Id: ENSP00000427661   ⟸   ENST00000507527
RefSeq Acc Id: ENSP00000410056   ⟸   ENST00000432095
RefSeq Acc Id: XP_047273752   ⟸   XM_047417796
- Peptide Label: isoform X14
RefSeq Acc Id: XP_047273750   ⟸   XM_047417794
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047273751   ⟸   XM_047417795
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047273753   ⟸   XM_047417797
- Peptide Label: isoform X15
RefSeq Acc Id: XP_054209567   ⟸   XM_054353592
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054209575   ⟸   XM_054353600
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054209568   ⟸   XM_054353593
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054209574   ⟸   XM_054353599
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054209576   ⟸   XM_054353601
- Peptide Label: isoform X11
RefSeq Acc Id: XP_054209569   ⟸   XM_054353594
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054209577   ⟸   XM_054353602
- Peptide Label: isoform X12
RefSeq Acc Id: XP_054209573   ⟸   XM_054353598
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054209572   ⟸   XM_054353597
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054209570   ⟸   XM_054353595
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054209571   ⟸   XM_054353596
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054209579   ⟸   XM_054353604
- Peptide Label: isoform X14
RefSeq Acc Id: XP_054209580   ⟸   XM_054353605
- Peptide Label: isoform X15
RefSeq Acc Id: XP_054209578   ⟸   XM_054353603
- Peptide Label: isoform X13

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96Q91-F1-model_v2 AlphaFold Q96Q91 1-983 view protein structure

Promoters
RGD ID:6870792
Promoter ID:EPDNEW_H8561
Type:multiple initiation site
Name:SLC4A9_1
Description:solute carrier family 4 member 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385140,360,195 - 140,360,255EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:11035 AgrOrtholog
COSMIC SLC4A9 COSMIC
Ensembl Genes ENSG00000113073 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000432095 ENTREZGENE
  ENST00000432095.6 UniProtKB/Swiss-Prot
  ENST00000506545 ENTREZGENE
  ENST00000506545.5 UniProtKB/Swiss-Prot
  ENST00000506757 ENTREZGENE
  ENST00000506757.7 UniProtKB/Swiss-Prot
  ENST00000507527 ENTREZGENE
  ENST00000507527.1 UniProtKB/Swiss-Prot
Gene3D-CATH Helical hairpin bin UniProtKB/Swiss-Prot
GTEx ENSG00000113073 GTEx
HGNC ID HGNC:11035 ENTREZGENE
Human Proteome Map SLC4A9 Human Proteome Map
InterPro Band3_cytoplasmic_dom UniProtKB/Swiss-Prot
  HCO3_transpt_C UniProtKB/Swiss-Prot
  HCO3_transpt_euk UniProtKB/Swiss-Prot
  Na/HCO3_transpt UniProtKB/Swiss-Prot
  PTrfase/Anion_transptr UniProtKB/Swiss-Prot
KEGG Report hsa:83697 UniProtKB/Swiss-Prot
NCBI Gene 83697 ENTREZGENE
OMIM 610207 OMIM
PANTHER ANION EXCHANGE PROTEIN 4 UniProtKB/Swiss-Prot
  PTHR11453 UniProtKB/Swiss-Prot
Pfam Band_3_cyto UniProtKB/Swiss-Prot
  HCO3_cotransp UniProtKB/Swiss-Prot
PharmGKB PA35901 PharmGKB
PRINTS HCO3TRNSPORT UniProtKB/Swiss-Prot
  NAHCO3TRSPRT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF55804 UniProtKB/Swiss-Prot
UniProt B3A4_HUMAN UniProtKB/Swiss-Prot
  B7ZL63 ENTREZGENE
  D3DQD4 ENTREZGENE
  D3DQD5 ENTREZGENE
  D3DQD6 ENTREZGENE
  E9PDK1 ENTREZGENE
  Q96Q91 ENTREZGENE
  Q96RM5 ENTREZGENE
  Q9BXF2 ENTREZGENE
  Q9BXN3 ENTREZGENE
UniProt Secondary B7ZL63 UniProtKB/Swiss-Prot
  D3DQD4 UniProtKB/Swiss-Prot
  D3DQD5 UniProtKB/Swiss-Prot
  D3DQD6 UniProtKB/Swiss-Prot
  E9PDK1 UniProtKB/Swiss-Prot
  Q96RM5 UniProtKB/Swiss-Prot
  Q9BXF2 UniProtKB/Swiss-Prot
  Q9BXN3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 SLC4A9  solute carrier family 4 member 9    solute carrier family 4, sodium bicarbonate cotransporter, member 9  Symbol and/or name change 5135510 APPROVED
2012-05-08 SLC4A9  solute carrier family 4, sodium bicarbonate cotransporter, member 9  SLC4A9  solute carrier family 4, sodium bicarbonate cotransporter, member 9  Symbol and/or name change 5135510 APPROVED