Pgm1 (phosphoglucomutase 1) - Rat Genome Database

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Gene: Pgm1 (phosphoglucomutase 1) Heterocephalus glaber
Analyze
Symbol: Pgm1
Name: phosphoglucomutase 1
RGD ID: 18911577
Description: ENCODES a protein that exhibits isomerase activity (inferred); magnesium ion binding (inferred); metal ion binding (inferred); INVOLVED IN cellular response to magnetism (ortholog); galactose catabolic process via UDP-galactose (ortholog); glucose metabolic process (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; fructose-1,6-bisphosphatase deficiency pathway; galactokinase deficiency pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Colorectal Neoplasms (ortholog); congenital disorder of glycosylation (ortholog); FOUND IN Z disc (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphoglucomutase-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474230,542,448 - 30,592,162 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474230,543,161 - 30,592,117 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
Z disc  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pgm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474230,542,448 - 30,592,162 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474230,543,161 - 30,592,117 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PGM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,593,411 - 63,660,245 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,593,411 - 63,660,245 (+)EnsemblGRCh38hg38GRCh38
GRCh37164,059,082 - 64,125,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,831,535 - 63,898,504 (+)NCBINCBI36Build 36hg18NCBI36
Build 34163,770,967 - 63,837,935NCBI
Celera162,348,856 - 62,415,793 (+)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef162,166,918 - 62,233,884 (+)NCBIHuRef
CHM1_1164,174,737 - 64,241,622 (+)NCBICHM1_1
T2T-CHM13v2.0163,469,205 - 63,536,042 (+)NCBIT2T-CHM13v2.0
Pgm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39499,786,648 - 99,844,491 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl499,786,611 - 99,844,491 (+)EnsemblGRCm39 Ensembl
GRCm38499,929,451 - 99,987,294 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl499,929,414 - 99,987,294 (+)EnsemblGRCm38mm10GRCm38
MGSCv37499,602,056 - 99,659,899 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36499,427,439 - 99,485,223 (+)NCBIMGSCv36mm8
Celera498,273,961 - 98,332,209 (+)NCBICelera
Cytogenetic Map4C6NCBI
cM Map445.71NCBI
Pgm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85119,710,734 - 119,770,159 (+)NCBIGRCr8
mRatBN7.25114,595,298 - 114,654,728 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5114,595,293 - 114,654,728 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5117,151,682 - 117,211,109 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05118,877,005 - 118,936,428 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05118,939,539 - 118,998,971 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05118,743,632 - 118,803,055 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5118,743,632 - 118,803,055 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05122,648,579 - 122,708,212 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45120,595,650 - 120,655,915 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5113,142,712 - 113,202,105 (+)NCBICelera
RH 3.4 Map5 RGD
Cytogenetic Map5q33NCBI
Pgm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542326,408,595 - 26,437,527 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542326,408,775 - 26,437,527 (-)NCBIChiLan1.0ChiLan1.0
PGM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21163,193,482 - 163,262,694 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11162,344,100 - 162,411,352 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0162,849,451 - 62,916,359 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1164,658,599 - 64,725,496 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl164,658,599 - 64,725,496 (+)Ensemblpanpan1.1panPan2
PGM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1546,444,433 - 46,577,621 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl546,515,295 - 46,577,622 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha546,505,433 - 46,638,431 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0546,624,512 - 46,757,954 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl546,672,266 - 46,757,997 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1546,586,542 - 46,719,720 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0546,532,568 - 46,666,112 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0546,790,338 - 46,923,562 (-)NCBIUU_Cfam_GSD_1.0
Pgm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505876,845,424 - 76,905,846 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366921,160,623 - 1,221,746 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366921,160,836 - 1,221,270 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6148,851,183 - 148,994,952 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16148,851,183 - 148,918,891 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26137,171,270 - 137,233,581 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PGM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12069,391,487 - 69,495,156 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2069,428,996 - 69,466,191 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603347,968,869 - 48,035,370 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000024873   ⟹   ENSHGLP00000024651
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474230,542,448 - 30,592,162 (-)Ensembl
RefSeq Acc Id: XM_004841523   ⟹   XP_004841580
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474230,543,161 - 30,592,117 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004841580 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000024651
GenBank Protein JAO02422 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004841580   ⟸   XM_004841523
- UniProtKB: A0A0N8EUL9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000024651   ⟸   ENSHGLT00000024873


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017576 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000024873 ENTREZGENE
Gene3D-CATH Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 UniProtKB/TrEMBL
  Alpha-D-phosphohexomutase, C-terminal domain UniProtKB/TrEMBL
InterPro A-D-PHexomutase_a/b/a-I UniProtKB/TrEMBL
  A-D-PHexomutase_a/b/a-I/II/III UniProtKB/TrEMBL
  A-D-PHexomutase_a/b/a-II UniProtKB/TrEMBL
  A-D-PHexomutase_a/b/a-III UniProtKB/TrEMBL
  A-D-PHexomutase_C_sf UniProtKB/TrEMBL
  A-D-PHexomutase_CS UniProtKB/TrEMBL
  Alpha-D-phosphohexomutase_SF UniProtKB/TrEMBL
  PGM UniProtKB/TrEMBL
NCBI Gene Pgm1 ENTREZGENE
PANTHER PHOSPHOGLUCOMUTASE-1 UniProtKB/TrEMBL
  PTHR22573 UniProtKB/TrEMBL
Pfam PGM_PMM_I UniProtKB/TrEMBL
  PGM_PMM_II UniProtKB/TrEMBL
  PGM_PMM_III UniProtKB/TrEMBL
PRINTS PGMPMM UniProtKB/TrEMBL
PROSITE PGM_PMM UniProtKB/TrEMBL
Superfamily-SCOP SSF53738 UniProtKB/TrEMBL
  SSF55957 UniProtKB/TrEMBL
UniProt A0A0N8EUL9 ENTREZGENE, UniProtKB/TrEMBL