Slc15a4 (solute carrier family 15 member 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Slc15a4 (solute carrier family 15 member 4) Heterocephalus glaber
Analyze
Symbol: Slc15a4
Name: solute carrier family 15 member 4
RGD ID: 18911036
Description: ENCODES a protein that exhibits dipeptide transmembrane transporter activity (ortholog); L-histidine transmembrane transporter activity (ortholog); peptide:proton symporter activity (ortholog); INVOLVED IN dipeptide import across plasma membrane (ortholog); histidine transport (ortholog); L-histidine transmembrane export from vacuole (ortholog); ASSOCIATED WITH systemic lupus erythematosus (ortholog); FOUND IN early endosome membrane (ortholog); endolysosome membrane (ortholog); endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474726,252,492 - 26,275,173 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474726,252,788 - 26,275,273 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc15a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474726,252,492 - 26,275,173 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474726,252,788 - 26,275,273 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC15A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812128,793,194 - 128,823,958 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12128,793,194 - 128,823,958 (-)EnsemblGRCh38hg38GRCh38
GRCh3712129,277,739 - 129,308,503 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612127,843,713 - 127,874,494 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412127,802,644 - 127,833,421NCBI
Celera12128,891,861 - 128,922,740 (-)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12126,263,573 - 126,285,425 (-)NCBIHuRef
CHM1_112129,098,609 - 129,129,417 (-)NCBICHM1_1
T2T-CHM13v2.012128,825,188 - 128,855,979 (-)NCBIT2T-CHM13v2.0
Slc15a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395127,668,795 - 127,710,356 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5127,672,728 - 127,709,961 (-)EnsemblGRCm39 Ensembl
GRCm385127,594,545 - 127,633,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5127,595,664 - 127,632,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv375128,076,036 - 128,097,762 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365127,884,869 - 127,906,595 (-)NCBIMGSCv36mm8
Celera5124,625,149 - 124,646,865 (-)NCBICelera
Cytogenetic Map5G1.2NCBI
cM Map566.0NCBI
Slc15a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81234,684,583 - 34,718,429 (+)NCBIGRCr8
mRatBN7.21229,048,634 - 29,082,480 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1229,063,015 - 29,082,480 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1230,198,626 - 30,218,177 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01230,810,079 - 30,829,630 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01229,869,246 - 29,888,797 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01232,753,824 - 32,773,277 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1232,753,824 - 32,773,277 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01234,660,965 - 34,680,418 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41230,111,863 - 30,131,134 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11229,975,250 - 29,994,522 (+)NCBI
Celera1230,749,254 - 30,768,706 (+)NCBICelera
Cytogenetic Map12q14NCBI
Slc15a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554822,327,137 - 2,343,980 (+)NCBIChiLan1.0ChiLan1.0
SLC15A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210136,865,833 - 136,896,753 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112136,862,353 - 136,893,242 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012126,418,071 - 126,448,917 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112130,639,525 - 130,669,822 (-)NCBIpanpan1.1PanPan1.1panPan2
SLC15A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1262,803,798 - 2,832,057 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl262,802,724 - 2,831,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha263,006,941 - 3,035,199 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0263,056,487 - 3,084,750 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl263,056,499 - 3,084,223 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1262,988,152 - 3,015,703 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0263,086,221 - 3,113,814 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0262,996,157 - 3,024,420 (+)NCBIUU_Cfam_GSD_1.0
Slc15a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118124,227,513 - 124,239,308 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936660481,772 - 493,567 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC15A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1426,122,386 - 26,154,781 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11426,122,362 - 26,154,414 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21427,770,845 - 27,803,186 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC15A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111124,170,785 - 124,204,358 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11124,169,732 - 124,204,200 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037121,090,609 - 121,123,572 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000015539   ⟹   ENSHGLP00000015379
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474726,252,492 - 26,275,173 (-)Ensembl
RefSeq Acc Id: XM_013071923   ⟹   XP_012927377
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474726,252,788 - 26,275,272 (-)NCBI
RefSeq Acc Id: XM_021257661   ⟹   XP_021113320
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474726,252,788 - 26,275,273 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012927377 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113320 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015379
RefSeq Acc Id: XP_021113320   ⟸   XM_021257661
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012927377   ⟸   XM_013071923
- Peptide Label: isoform X1
Ensembl Acc Id: ENSHGLP00000015379   ⟸   ENSHGLT00000015539


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010992 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015539 ENTREZGENE
NCBI Gene Slc15a4 ENTREZGENE