Slc15a4 (solute carrier family 15, member 4) - Rat Genome Database

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Gene: Slc15a4 (solute carrier family 15, member 4) Mus musculus
Analyze
Symbol: Slc15a4
Name: solute carrier family 15, member 4
RGD ID: 733039
MGI Page MGI
Description: Enables L-histidine transmembrane transporter activity and peptide:proton symporter activity. Involved in several processes, including L-histidine transmembrane export from vacuole; positive regulation of pattern recognition receptor signaling pathway; and regulation of isotype switching to IgG isotypes. Located in early endosome membrane and lysosomal membrane. Is integral component of endosome membrane and integral component of lysosomal membrane. Is expressed in embryo. Orthologous to human SLC15A4 (solute carrier family 15 member 4); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: AA987064; AW742963; C130069N12Rik; peptide transporter 4; peptide-histidine transporter 4; peptide/histidine transporter 1; PHT; PHT1; PT; PTR4; solute carrier family 15 member 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395127,668,795 - 127,710,356 (-)NCBIGRCm39mm39
GRCm39 Ensembl5127,672,728 - 127,709,961 (-)Ensembl
GRCm385127,594,545 - 127,633,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5127,595,664 - 127,632,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv375128,076,036 - 128,097,762 (-)NCBIGRCm37mm9NCBIm37
MGSCv365127,884,869 - 127,906,595 (-)NCBImm8
Celera5124,625,149 - 124,646,865 (-)NCBICelera
Cytogenetic Map5G1.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12935356   PMID:14681479   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:18799693   PMID:19570976   PMID:21045126   PMID:21267068   PMID:21277849   PMID:21873635   PMID:23028315   PMID:23375831   PMID:23382217   PMID:24548120  
PMID:24695226   PMID:25238095   PMID:25310967   PMID:26257170   PMID:27553280   PMID:27845049   PMID:29055005   PMID:29155995   PMID:29305823   PMID:29784761   PMID:30262916   PMID:33444326  


Genomics

Comparative Map Data
Slc15a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395127,668,795 - 127,710,356 (-)NCBIGRCm39mm39
GRCm39 Ensembl5127,672,728 - 127,709,961 (-)Ensembl
GRCm385127,594,545 - 127,633,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5127,595,664 - 127,632,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv375128,076,036 - 128,097,762 (-)NCBIGRCm37mm9NCBIm37
MGSCv365127,884,869 - 127,906,595 (-)NCBImm8
Celera5124,625,149 - 124,646,865 (-)NCBICelera
Cytogenetic Map5G1.2NCBI
SLC15A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12128,793,194 - 128,823,958 (-)EnsemblGRCh38hg38GRCh38
GRCh3812128,793,194 - 128,823,966 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712129,277,739 - 129,308,503 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612127,843,713 - 127,874,494 (-)NCBINCBI36hg18NCBI36
Build 3412127,802,644 - 127,833,421NCBI
Celera12128,891,861 - 128,922,740 (-)NCBI
Cytogenetic Map12q24.33NCBI
HuRef12126,263,573 - 126,285,425 (-)NCBIHuRef
CHM1_112129,098,609 - 129,129,417 (-)NCBICHM1_1
Slc15a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21229,048,634 - 29,082,480 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1229,063,015 - 29,082,480 (+)Ensembl
Rnor_6.01232,753,824 - 32,773,277 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1232,753,824 - 32,773,277 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01234,660,965 - 34,680,418 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41230,111,863 - 30,131,134 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11229,975,250 - 29,994,522 (+)NCBI
Celera1230,749,254 - 30,768,706 (+)NCBICelera
Cytogenetic Map12q14NCBI
Slc15a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554822,327,137 - 2,343,980 (+)NCBIChiLan1.0ChiLan1.0
SLC15A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112130,639,525 - 130,669,822 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v012126,418,071 - 126,448,917 (-)NCBIMhudiblu_PPA_v0panPan3
SLC15A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1262,803,798 - 2,832,057 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl262,802,724 - 2,831,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha263,006,941 - 3,035,199 (+)NCBI
ROS_Cfam_1.0263,056,487 - 3,084,750 (+)NCBI
UMICH_Zoey_3.1262,988,152 - 3,015,703 (+)NCBI
UNSW_CanFamBas_1.0263,086,221 - 3,113,814 (+)NCBI
UU_Cfam_GSD_1.0262,996,157 - 3,024,420 (+)NCBI
Slc15a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118124,227,513 - 124,239,308 (+)NCBI
SpeTri2.0NW_004936660481,772 - 493,567 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC15A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1426,122,363 - 26,154,786 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11426,122,362 - 26,154,414 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21427,770,845 - 27,803,186 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC15A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111124,170,785 - 124,204,358 (-)NCBI
ChlSab1.1 Ensembl11124,169,732 - 124,204,200 (-)Ensembl
Vero_WHO_p1.0NW_023666037121,090,609 - 121,123,572 (+)NCBI
Slc15a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474726,252,788 - 26,275,273 (-)NCBI

Position Markers
AA987064  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385127,595,725 - 127,595,885UniSTSGRCm38
MGSCv375128,076,095 - 128,076,255UniSTSGRCm37
Celera5124,625,208 - 124,625,368UniSTS
Cytogenetic Map5G1.2UniSTS
Whitehead/MRC_RH51557.11UniSTS
UniSTS:235324  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385127,595,757 - 127,595,995UniSTSGRCm38
MGSCv375128,076,127 - 128,076,365UniSTSGRCm37
Celera5124,625,240 - 124,625,478UniSTS
Cytogenetic Map5G1.2UniSTS
Slc15a4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G1.2UniSTS
cM Map566.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125101165141714711Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596172519130172667Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118920110151834684Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined596883692130883925Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109090758139133150Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595085348129085464Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121556974151834684Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124714580151834684Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119806972149423861Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595286714129286920Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5113883692129555542Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined596883692130883925Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595317683129317856Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589271017146851125Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125147702151834684Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109362284143362395Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115128044149128176Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113172519138557193Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115128044149128176Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101725767135725963Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107829235141829348Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595317683129317856Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119806972141714711Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109090176143090317Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104435822138557193Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104567876138567876Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107829235141829348Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100527900134527900Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)569900000132500000Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595317683129317856Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109090176143090317Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526236236138457140Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107829235141829348Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574300000132500000Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101194514135194514Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102806972136807131Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121457140151834684Mouse
14746986Manh58_mmandible shape 58 (mouse)5102308218136308218Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100527900134527900Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572700000140000000Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574300000132500000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2676
Count of miRNA genes:654
Interacting mature miRNAs:819
Transcripts:ENSMUST00000031367, ENSMUST00000124569, ENSMUST00000144603, ENSMUST00000152727, ENSMUST00000153832, ENSMUST00000155321, ENSMUST00000182841
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003955563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC144908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC169500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC169519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY050630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000031367   ⟹   ENSMUSP00000031367
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,672,728 - 127,694,480 (-)Ensembl
GRCm38.p6 Ensembl5127,595,664 - 127,617,416 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124569   ⟹   ENSMUSP00000121595
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,672,731 - 127,694,290 (-)Ensembl
GRCm38.p6 Ensembl5127,595,667 - 127,617,226 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144603   ⟹   ENSMUSP00000116420
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,678,994 - 127,709,944 (-)Ensembl
GRCm38.p6 Ensembl5127,601,930 - 127,632,880 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152727   ⟹   ENSMUSP00000116529
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,680,871 - 127,686,415 (-)Ensembl
GRCm38.p6 Ensembl5127,603,807 - 127,609,351 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153832   ⟹   ENSMUSP00000123116
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,672,731 - 127,694,482 (-)Ensembl
GRCm38.p6 Ensembl5127,595,667 - 127,617,418 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155321   ⟹   ENSMUSP00000117258
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,685,857 - 127,709,961 (-)Ensembl
GRCm38.p6 Ensembl5127,608,793 - 127,632,897 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182841
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,691,510 - 127,694,445 (-)Ensembl
GRCm38.p6 Ensembl5127,614,446 - 127,617,381 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198486   ⟹   ENSMUSP00000142476
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,673,720 - 127,681,744 (-)Ensembl
GRCm38.p6 Ensembl5127,596,656 - 127,604,680 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198727
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,681,670 - 127,693,947 (-)Ensembl
GRCm38.p6 Ensembl5127,604,606 - 127,616,883 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199810
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,680,845 - 127,681,671 (-)Ensembl
GRCm38.p6 Ensembl5127,603,781 - 127,604,607 (-)Ensembl
RefSeq Acc Id: ENSMUST00000200212
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,680,845 - 127,681,671 (-)Ensembl
GRCm38.p6 Ensembl5127,603,781 - 127,604,607 (-)Ensembl
RefSeq Acc Id: NM_133895   ⟹   NP_598656
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,672,730 - 127,694,456 (-)NCBI
GRCm385127,595,666 - 127,617,392 (-)NCBI
MGSCv375128,076,036 - 128,097,762 (-)RGD
Celera5124,625,149 - 124,646,865 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006504271   ⟹   XP_006504334
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,668,795 - 127,695,808 (-)NCBI
GRCm385127,594,545 - 127,617,651 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006504272   ⟹   XP_006504335
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,668,795 - 127,710,356 (-)NCBI
GRCm385127,594,545 - 127,633,292 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001784584
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,671,609 - 127,695,808 (-)NCBI
GRCm385127,594,545 - 127,617,651 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003955563
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,671,609 - 127,695,808 (-)NCBI
GRCm385127,594,545 - 127,617,651 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942414
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,671,609 - 127,695,808 (-)NCBI
RefSeq Acc Id: XR_004942415
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,671,609 - 127,695,808 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_598656   ⟸   NM_133895
- UniProtKB: Q91W98 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006504335   ⟸   XM_006504272
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006504334   ⟸   XM_006504271
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000142476   ⟸   ENSMUST00000198486
RefSeq Acc Id: ENSMUSP00000116420   ⟸   ENSMUST00000144603
RefSeq Acc Id: ENSMUSP00000121595   ⟸   ENSMUST00000124569
RefSeq Acc Id: ENSMUSP00000031367   ⟸   ENSMUST00000031367
RefSeq Acc Id: ENSMUSP00000116529   ⟸   ENSMUST00000152727
RefSeq Acc Id: ENSMUSP00000123116   ⟸   ENSMUST00000153832
RefSeq Acc Id: ENSMUSP00000117258   ⟸   ENSMUST00000155321

Promoters
RGD ID:6888152
Promoter ID:EPDNEW_M7527
Type:initiation region
Name:Slc15a4_1
Description:Mus musculus solute carrier family 15, member 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385127,617,419 - 127,617,479EPDNEW
RGD ID:6838355
Promoter ID:MM_KWN:44175
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Liver
Transcripts:OTTMUST00000071350
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365128,089,836 - 128,090,336 (-)MPROMDB
RGD ID:6838356
Promoter ID:MM_KWN:44176
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000075376,   OTTMUST00000071346,   OTTMUST00000071348,   UC008ZSC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365128,097,486 - 128,097,986 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2140796 AgrOrtholog
Ensembl Genes ENSMUSG00000029416 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000031367 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116420 UniProtKB/TrEMBL
  ENSMUSP00000116529 UniProtKB/TrEMBL
  ENSMUSP00000117258 UniProtKB/TrEMBL
  ENSMUSP00000121595 UniProtKB/TrEMBL
  ENSMUSP00000123116 UniProtKB/TrEMBL
  ENSMUSP00000142476 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031367 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000124569 UniProtKB/TrEMBL
  ENSMUST00000144603 UniProtKB/TrEMBL
  ENSMUST00000152727 UniProtKB/TrEMBL
  ENSMUST00000153832 UniProtKB/TrEMBL
  ENSMUST00000155321 UniProtKB/TrEMBL
  ENSMUST00000198486 UniProtKB/TrEMBL
InterPro MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POT_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTR2_symporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:100561 UniProtKB/Swiss-Prot
MGD MGI:2140796 ENTREZGENE
NCBI Gene 100561 ENTREZGENE
PANTHER PTHR11654 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PTR2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc15a4 PhenoGen
PROSITE PTR2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JDS1_MOUSE UniProtKB/TrEMBL
  D3Z4X0_MOUSE UniProtKB/TrEMBL
  D3Z5E9_MOUSE UniProtKB/TrEMBL
  D6RDC2_MOUSE UniProtKB/TrEMBL
  F6QFB4_MOUSE UniProtKB/TrEMBL
  F7AZ26_MOUSE UniProtKB/TrEMBL
  Q91W98 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q7TPL5 UniProtKB/Swiss-Prot