SLC15A4 (solute carrier family 15 member 4) - Rat Genome Database

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Gene: SLC15A4 (solute carrier family 15 member 4) Canis lupus familiaris
Analyze
Symbol: SLC15A4
Name: solute carrier family 15 member 4
RGD ID: 12246839
Description: ENCODES a protein that exhibits dipeptide transmembrane transporter activity (ortholog); L-histidine transmembrane transporter activity (ortholog); peptide:proton symporter activity (ortholog); INVOLVED IN dipeptide import across plasma membrane (ortholog); histidine transport (ortholog); L-histidine transmembrane export from vacuole (ortholog); ASSOCIATED WITH systemic lupus erythematosus (ortholog); FOUND IN early endosome membrane (ortholog); endolysosome membrane (ortholog); endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1262,803,798 - 2,832,057 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl262,802,724 - 2,831,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha263,006,941 - 3,035,199 (+)NCBI
ROS_Cfam_1.0263,056,487 - 3,084,750 (+)NCBI
UMICH_Zoey_3.1262,988,152 - 3,015,703 (+)NCBI
UNSW_CanFamBas_1.0263,086,221 - 3,113,814 (+)NCBI
UU_Cfam_GSD_1.0262,996,157 - 3,024,420 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
SLC15A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1262,803,798 - 2,832,057 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl262,802,724 - 2,831,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha263,006,941 - 3,035,199 (+)NCBI
ROS_Cfam_1.0263,056,487 - 3,084,750 (+)NCBI
UMICH_Zoey_3.1262,988,152 - 3,015,703 (+)NCBI
UNSW_CanFamBas_1.0263,086,221 - 3,113,814 (+)NCBI
UU_Cfam_GSD_1.0262,996,157 - 3,024,420 (+)NCBI
SLC15A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12128,793,194 - 128,823,958 (-)EnsemblGRCh38hg38GRCh38
GRCh3812128,793,194 - 128,823,966 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712129,277,739 - 129,308,503 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612127,843,713 - 127,874,494 (-)NCBINCBI36hg18NCBI36
Build 3412127,802,644 - 127,833,421NCBI
Celera12128,891,861 - 128,922,740 (-)NCBI
Cytogenetic Map12q24.33NCBI
HuRef12126,263,573 - 126,285,425 (-)NCBIHuRef
CHM1_112129,098,609 - 129,129,417 (-)NCBICHM1_1
Slc15a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395127,668,795 - 127,710,356 (-)NCBIGRCm39mm39
GRCm39 Ensembl5127,672,728 - 127,709,961 (-)Ensembl
GRCm385127,594,545 - 127,633,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5127,595,664 - 127,632,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv375128,076,036 - 128,097,762 (-)NCBIGRCm37mm9NCBIm37
MGSCv365127,884,869 - 127,906,595 (-)NCBImm8
Celera5124,625,149 - 124,646,865 (-)NCBICelera
Cytogenetic Map5G1.2NCBI
Slc15a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21229,048,634 - 29,082,480 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1232,753,824 - 32,773,277 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01232,753,824 - 32,773,277 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01234,660,965 - 34,680,418 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41230,111,863 - 30,131,134 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11229,975,250 - 29,994,522 (+)NCBI
Celera1230,749,254 - 30,768,706 (+)NCBICelera
Cytogenetic Map12q14NCBI
Slc15a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554822,327,137 - 2,343,980 (+)NCBIChiLan1.0ChiLan1.0
SLC15A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112130,639,525 - 130,669,822 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v012126,418,071 - 126,448,917 (-)NCBIMhudiblu_PPA_v0panPan3
Slc15a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118124,227,513 - 124,239,308 (+)NCBI
SpeTri2.0NW_004936660481,772 - 493,567 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC15A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1426,122,363 - 26,154,786 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11426,122,362 - 26,154,414 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21427,770,845 - 27,803,186 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC15A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111124,170,785 - 124,204,358 (-)NCBI
ChlSab1.1 Ensembl11124,169,732 - 124,204,200 (-)Ensembl
Vero_WHO_p1.0NW_023666037121,090,609 - 121,123,572 (+)NCBI
Slc15a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474726,252,788 - 26,275,273 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 1 10 6
Low 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000010986   ⟹   ENSCAFP00000010182
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl262,802,724 - 2,831,214 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000062868   ⟹   ENSCAFP00000059352
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl262,802,724 - 2,831,214 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000068103   ⟹   ENSCAFP00000056983
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl262,802,724 - 2,831,214 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000091538   ⟹   ENSCAFP00000055813
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl262,802,724 - 2,831,530 (+)Ensembl
RefSeq Acc Id: XM_038436340   ⟹   XP_038292268
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0263,056,487 - 3,084,750 (+)NCBI
RefSeq Acc Id: XM_038512594   ⟹   XP_038368522
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1262,988,152 - 3,015,703 (+)NCBI
RefSeq Acc Id: XM_038574734   ⟹   XP_038430662
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0262,996,157 - 3,024,420 (+)NCBI
RefSeq Acc Id: XM_038638758   ⟹   XP_038494686
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0263,086,221 - 3,113,814 (+)NCBI
RefSeq Acc Id: XM_847449   ⟹   XP_852542
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1262,803,798 - 2,832,057 (+)NCBI
Dog10K_Boxer_Tasha263,006,941 - 3,035,199 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038292268 (Get FASTA)   NCBI Sequence Viewer  
  XP_038368522 (Get FASTA)   NCBI Sequence Viewer  
  XP_038430662 (Get FASTA)   NCBI Sequence Viewer  
  XP_038494686 (Get FASTA)   NCBI Sequence Viewer  
  XP_852542 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_852542   ⟸   XM_847449
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCAFP00000010182   ⟸   ENSCAFT00000010986
RefSeq Acc Id: ENSCAFP00000056983   ⟸   ENSCAFT00000068103
RefSeq Acc Id: ENSCAFP00000055813   ⟸   ENSCAFT00000091538
RefSeq Acc Id: ENSCAFP00000059352   ⟸   ENSCAFT00000062868
RefSeq Acc Id: XP_038368522   ⟸   XM_038512594
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038494686   ⟸   XM_038638758
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038292268   ⟸   XM_038436340
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038430662   ⟸   XM_038574734
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006831 Ensembl
NCBI Gene SLC15A4 ENTREZGENE
VGNC ID VGNC:52967 ENTREZGENE