Slc9a6 (solute carrier family 9 member A6) - Rat Genome Database

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Gene: Slc9a6 (solute carrier family 9 member A6) Heterocephalus glaber
Analyze
Symbol: Slc9a6
Name: solute carrier family 9 member A6
RGD ID: 18902111
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN axon extension (ortholog); brain-derived neurotrophic factor receptor signaling pathway (ortholog); dendrite extension (ortholog); PARTICIPATES IN angiotensin II signaling pathway via AT2 receptor; ASSOCIATED WITH astigmatism (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN axon terminus (ortholog); axonal spine (ortholog); cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Sodium/hydrogen exchanger 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480811,107,125 - 11,157,913 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc9a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480811,107,125 - 11,157,913 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC9A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X135,973,837 - 136,047,269 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX135,973,841 - 136,047,269 (+)EnsemblGRCh38hg38GRCh38
GRCh37X135,055,996 - 135,129,428 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X134,895,252 - 134,957,094 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X134,793,146 - 134,854,812NCBI
CeleraX135,428,360 - 135,490,286 (+)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX124,341,164 - 124,403,216 (+)NCBIHuRef
CHM1_1X134,978,471 - 135,040,349 (+)NCBICHM1_1
T2T-CHM13v2.0X134,282,570 - 134,355,980 (+)NCBIT2T-CHM13v2.0
Slc9a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X55,654,921 - 55,709,590 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX55,655,117 - 55,709,590 (+)EnsemblGRCm39 Ensembl
GRCm38X56,609,556 - 56,664,230 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX56,609,757 - 56,664,230 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X53,863,012 - 53,917,407 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X52,956,638 - 53,008,677 (+)NCBIMGSCv36mm8
CeleraX43,091,843 - 43,146,238 (+)NCBICelera
Cytogenetic MapXA5- A6NCBI
cM MapX30.06NCBI
Slc9a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X139,468,045 - 139,524,111 (+)NCBIGRCr8
mRatBN7.2X134,430,677 - 134,486,747 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX134,420,756 - 134,485,375 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X158,979,081 - 159,045,019 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX158,978,755 - 159,045,044 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X153,620,082 - 153,675,717 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X141,146,237 - 141,201,234 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX142,471,399 - 142,536,119 (+)NCBICelera
Cytogenetic MapXq36NCBI
Slc9a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554899,019,425 - 9,078,705 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554899,020,719 - 9,078,375 (-)NCBIChiLan1.0ChiLan1.0
SLC9A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X135,398,673 - 135,460,202 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X135,402,314 - 135,463,798 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X125,099,378 - 125,171,161 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X135,378,091 - 135,439,781 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX135,378,094 - 135,439,781 (+)Ensemblpanpan1.1panPan2
SLC9A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X106,408,789 - 106,465,504 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX106,398,850 - 106,463,252 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX92,228,868 - 92,285,695 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X108,385,561 - 108,442,397 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX108,375,657 - 108,440,140 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X105,522,975 - 105,586,115 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X107,706,620 - 107,763,439 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X107,355,362 - 107,412,198 (+)NCBIUU_Cfam_GSD_1.0
Slc9a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X104,399,038 - 104,455,882 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651311,158,730 - 11,215,568 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651311,158,609 - 11,215,477 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC9A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX111,176,495 - 111,233,099 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X111,176,461 - 111,233,108 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X127,098,575 - 127,154,902 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC9A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X110,997,985 - 111,060,164 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX110,998,281 - 111,060,252 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606548,664,039 - 48,725,734 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004862341   ⟹   XP_004862398
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480811,107,125 - 11,157,800 (-)NCBI
RefSeq Acc Id: XM_021242514   ⟹   XP_021098173
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480811,109,501 - 11,157,913 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004862398 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098173 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB18089 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026434
RefSeq Acc Id: XP_004862398   ⟸   XM_004862341
- Peptide Label: isoform X1
- UniProtKB: G5C978 (UniProtKB/TrEMBL),   A0AAX6Q0P1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098173   ⟸   XM_021242514
- Peptide Label: isoform X2
- UniProtKB: G5C978 (UniProtKB/TrEMBL),   A0AAX6RQV9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018809 ENTREZGENE
Ensembl Transcript ENSHGLT00000026670 ENTREZGENE
Gene3D-CATH 6.10.140.1330 UniProtKB/TrEMBL
InterPro Cation/H_exchanger UniProtKB/TrEMBL
  Cation/H_exchanger_CPA1 UniProtKB/TrEMBL
  NaH_exchanger UniProtKB/TrEMBL
  NHE-6/7/9 UniProtKB/TrEMBL
NCBI Gene Slc9a6 ENTREZGENE
PANTHER SODIUM/HYDROGEN EXCHANGER UniProtKB/TrEMBL
  SODIUM/HYDROGEN EXCHANGER 6 UniProtKB/TrEMBL
Pfam Na_H_Exchanger UniProtKB/TrEMBL
PRINTS NAHEXCHNGR UniProtKB/TrEMBL
  NAHEXCHNGR6 UniProtKB/TrEMBL
UniProt A0AAX6Q0P1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RQV9 ENTREZGENE, UniProtKB/TrEMBL
  G5C978 ENTREZGENE, UniProtKB/TrEMBL