Exoc4 (exocyst complex component 4) - Rat Genome Database

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Gene: Exoc4 (exocyst complex component 4) Heterocephalus glaber
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Symbol: Exoc4
Name: exocyst complex component 4
RGD ID: 18899609
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); PDZ domain binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); establishment of cell polarity (ortholog); Golgi to transport vesicle transport (ortholog); PARTICIPATES IN E-cadherin signaling pathway; insulin signaling pathway; ASSOCIATED WITH Meckel syndrome (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cell leading edge (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247832,316,300 - 3,165,255 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247832,315,128 - 3,165,343 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Exoc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247832,316,300 - 3,165,255 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247832,315,128 - 3,165,343 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
EXOC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387133,253,078 - 134,100,951 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7133,253,072 - 134,067,137 (+)EnsemblGRCh38hg38GRCh38
GRCh377132,937,834 - 133,750,514 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367132,588,363 - 133,401,054 (+)NCBINCBI36Build 36hg18NCBI36
Build 347132,395,083 - 133,207,766NCBI
Celera7127,689,360 - 128,501,714 (+)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7127,253,094 - 128,065,500 (+)NCBIHuRef
CHM1_17132,872,749 - 133,685,075 (+)NCBICHM1_1
T2T-CHM13v2.07134,574,528 - 135,422,862 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27132,277,237 - 133,089,663 (+)NCBI
Exoc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39633,226,025 - 33,950,914 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl633,226,020 - 33,950,914 (+)EnsemblGRCm39 Ensembl
GRCm38633,249,090 - 33,973,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl633,249,085 - 33,973,979 (+)EnsemblGRCm38mm10GRCm38
MGSCv37633,199,150 - 33,922,943 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36633,179,308 - 33,903,101 (+)NCBIMGSCv36mm8
Celera633,234,875 - 33,967,226 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map614.59NCBI
Exoc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8462,774,896 - 63,551,541 (+)NCBIGRCr8
mRatBN7.2461,807,706 - 62,584,316 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl461,807,761 - 62,585,723 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx466,761,366 - 67,530,050 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0462,677,087 - 63,445,752 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0461,079,497 - 61,848,170 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0460,549,128 - 61,358,305 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl460,549,197 - 61,355,994 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0460,287,465 - 60,839,820 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0460,913,238 - 61,081,401 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4460,406,942 - 61,284,294 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1460,683,071 - 61,559,840 (+)NCBI
Celera456,882,713 - 57,637,636 (+)NCBICelera
Cytogenetic Map4q22NCBI
Exoc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541033,935,320 - 34,673,764 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541033,937,825 - 34,672,790 (-)NCBIChiLan1.0ChiLan1.0
EXOC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26170,083,599 - 170,888,092 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1722,093,854 - 22,898,347 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07125,226,107 - 126,030,486 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17137,734,349 - 138,537,446 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7137,734,400 - 138,536,214 (+)Ensemblpanpan1.1panPan2
EXOC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1143,334,286 - 4,077,478 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl143,334,220 - 4,077,411 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha142,990,436 - 3,736,256 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0143,063,572 - 3,812,726 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl143,063,572 - 3,812,695 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1143,267,885 - 4,015,200 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0143,012,296 - 3,761,501 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0143,158,194 - 3,902,305 (-)NCBIUU_Cfam_GSD_1.0
EXOC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1815,105,138 - 15,906,707 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11815,105,152 - 15,906,734 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21816,661,831 - 16,935,462 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EXOC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121101,885,192 - 102,694,892 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666042666,279 - 1,487,617 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004856313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002386707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01059735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01059769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01002378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH173296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000005994   ⟹   ENSHGLP00000005920
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247832,316,300 - 3,165,255 (-)Ensembl
RefSeq Acc Id: XM_004856313   ⟹   XP_004856370
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247832,315,128 - 3,165,343 (-)NCBI
RefSeq Acc Id: XM_021237603   ⟹   XP_021093262
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247832,315,128 - 3,165,343 (-)NCBI
RefSeq Acc Id: XM_021237604   ⟹   XP_021093263
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247832,315,128 - 3,144,961 (-)NCBI
RefSeq Acc Id: XM_021237605   ⟹   XP_021093264
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247832,315,128 - 3,144,486 (-)NCBI
RefSeq Acc Id: XM_021237606   ⟹   XP_021093265
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247832,931,250 - 3,165,343 (-)NCBI
RefSeq Acc Id: XR_002386707
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247832,453,070 - 3,165,343 (-)NCBI
RefSeq Acc Id: XP_021093262   ⟸   XM_021237603
- Peptide Label: isoform X2
- UniProtKB: A0A0P6K6F7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856370   ⟸   XM_004856313
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K6F7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093263   ⟸   XM_021237604
- Peptide Label: isoform X3
- UniProtKB: A0A0P6K6F7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093264   ⟸   XM_021237605
- Peptide Label: isoform X3
- UniProtKB: A0A0P6K6F7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093265   ⟸   XM_021237606
- Peptide Label: isoform X4
- UniProtKB: G5C4D7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000005920   ⟸   ENSHGLT00000005994


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004322 Ensembl, ENTREZGENE
  ENSHGLG00100004027 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000005994 ENTREZGENE
  ENSHGLT00100005388 UniProtKB/TrEMBL
InterPro Sec8/EXOC4 UniProtKB/TrEMBL
  Sec8_exocyst UniProtKB/TrEMBL
  Sec8_M UniProtKB/TrEMBL
NCBI Gene Exoc4 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 4 UniProtKB/TrEMBL
  PTHR14146 UniProtKB/TrEMBL
Pfam Sec8_C UniProtKB/TrEMBL
  Sec8_exocyst UniProtKB/TrEMBL
UniProt A0A0P6K6F7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PQI3_HETGA UniProtKB/TrEMBL
  A0AAX6RAA0_HETGA UniProtKB/TrEMBL
  A0AAX6RBW6_HETGA UniProtKB/TrEMBL
  A0AAX6RD27_HETGA UniProtKB/TrEMBL
  G5C4D7 ENTREZGENE, UniProtKB/TrEMBL