FLRT3 (fibronectin leucine rich transmembrane protein 3) - Rat Genome Database

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Gene: FLRT3 (fibronectin leucine rich transmembrane protein 3) Chlorocebus sabaeus
Analyze
Symbol: FLRT3
Name: fibronectin leucine rich transmembrane protein 3
RGD ID: 18777209
Description: ENCODES a protein that exhibits chemorepellent activity (inferred); fibroblast growth factor receptor binding (inferred); protein homodimerization activity (inferred); INVOLVED IN axon guidance (ortholog); positive regulation of synapse assembly (ortholog); response to axon injury (ortholog); ASSOCIATED WITH amenorrhea (ortholog); disorder of sexual development (ortholog); High Myopia (ortholog); FOUND IN axon terminus (ortholog); glutamatergic synapse (ortholog); postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat transmembrane protein FLRT3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1243,252,181 - 43,267,981 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl243,255,347 - 43,257,296 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660543,530,057 - 3,543,726 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FLRT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1243,252,181 - 43,267,981 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl243,255,347 - 43,257,296 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660543,530,057 - 3,543,726 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FLRT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382014,322,985 - 14,337,612 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2014,322,985 - 14,337,614 (-)EnsemblGRCh38hg38GRCh38
GRCh372014,303,631 - 14,318,258 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362014,252,643 - 14,266,270 (-)NCBINCBI36Build 36hg18NCBI36
Build 342014,252,642 - 14,266,270NCBI
Celera2014,379,950 - 14,393,623 (-)NCBICelera
Cytogenetic Map20p12.1NCBI
HuRef2014,264,895 - 14,278,567 (-)NCBIHuRef
CHM1_12014,304,603 - 14,318,275 (-)NCBICHM1_1
T2T-CHM13v2.02014,372,130 - 14,386,755 (-)NCBIT2T-CHM13v2.0
Flrt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392140,500,118 - 140,513,396 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2140,492,834 - 140,513,389 (-)EnsemblGRCm39 Ensembl
GRCm382140,658,198 - 140,671,476 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2140,650,914 - 140,671,469 (-)EnsemblGRCm38mm10GRCm38
MGSCv372140,483,934 - 140,497,212 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362140,349,640 - 140,362,910 (-)NCBIMGSCv36mm8
Celera2141,850,226 - 141,863,510 (-)NCBICelera
Cytogenetic Map2F3NCBI
cM Map269.2NCBI
Flrt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83148,448,115 - 148,461,458 (-)NCBIGRCr8
mRatBN7.23127,994,491 - 128,008,137 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3127,994,226 - 128,007,841 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3131,850,711 - 131,863,013 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03140,434,799 - 140,447,106 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03138,137,914 - 138,150,220 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03134,684,446 - 134,696,586 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3134,683,065 - 134,696,654 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03141,134,890 - 141,147,030 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43128,922,726 - 128,934,866 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3126,621,420 - 126,633,560 (-)NCBICelera
Cytogenetic Map3q41NCBI
Flrt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541523,669,749 - 23,683,235 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541523,669,749 - 23,683,235 (-)NCBIChiLan1.0ChiLan1.0
FLRT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22115,223,313 - 15,238,927 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12015,217,075 - 15,235,719 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02014,294,903 - 14,310,584 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12014,279,967 - 14,293,632 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2014,281,522 - 14,283,471 (-)Ensemblpanpan1.1panPan2
FLRT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1248,354,151 - 8,367,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl248,364,115 - 8,366,064 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha248,165,848 - 8,179,356 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0248,763,355 - 8,776,862 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl248,763,393 - 8,776,857 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1248,356,554 - 8,370,054 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0248,455,701 - 8,469,207 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0248,810,713 - 8,824,225 (+)NCBIUU_Cfam_GSD_1.0
Flrt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640157,101,485 - 157,115,032 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364855,532,853 - 5,546,392 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364855,532,554 - 5,547,430 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FLRT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1722,940,492 - 22,954,424 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11722,940,491 - 22,955,277 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21725,670,538 - 25,684,556 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Flrt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474115,343,653 - 15,355,727 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474115,343,304 - 15,355,742 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 17 33 33 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000018761   ⟹   ENSCSAP00000018193
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl243,255,347 - 43,257,296 (-)Ensembl
RefSeq Acc Id: XM_007960508   ⟹   XP_007958699
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1243,253,790 - 43,267,981 (-)NCBI
Vero_WHO_p1.0NW_0236660543,530,057 - 3,543,715 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960511   ⟹   XP_007958702
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1243,253,790 - 43,267,981 (-)NCBI
Vero_WHO_p1.0NW_0236660543,530,057 - 3,543,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960516   ⟹   XP_007958707
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1243,252,181 - 43,267,981 (-)NCBI
Vero_WHO_p1.0NW_0236660543,530,057 - 3,543,726 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007958699 (Get FASTA)   NCBI Sequence Viewer  
  XP_007958702 (Get FASTA)   NCBI Sequence Viewer  
  XP_007958707 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018193
  ENSCSAP00000018193.1
RefSeq Acc Id: XP_007958707   ⟸   XM_007960516
- UniProtKB: A0A0D9SBF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007958699   ⟸   XM_007960508
- UniProtKB: A0A0D9SBF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007958702   ⟸   XM_007960511
- UniProtKB: A0A0D9SBF4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000018193   ⟸   ENSCSAT00000018761


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018671 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018761.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
  SLRP UniProtKB/TrEMBL
KEGG Report csab:103214491 UniProtKB/TrEMBL
NCBI Gene FLRT3 ENTREZGENE
PANTHER AGAP007037-PA UniProtKB/TrEMBL
  AGAP008170-PA UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A0D9SBF4 ENTREZGENE, UniProtKB/TrEMBL