FGF12 (fibroblast growth factor 12) - Rat Genome Database

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Gene: FGF12 (fibroblast growth factor 12) Chlorocebus sabaeus
Analyze
Symbol: FGF12
Name: fibroblast growth factor 12
RGD ID: 18760946
Description: ENCODES a protein that exhibits fibroblast growth factor receptor binding (ortholog); heparin binding (ortholog); sodium channel regulator activity (ortholog); INVOLVED IN adult locomotory behavior (ortholog); chemical synaptic transmission (ortholog); fibroblast growth factor receptor signaling pathway (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 47 (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11586,252,816 - 86,836,363 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604159,914,424 - 60,500,806 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FGF12Green Monkeydevelopmental and epileptic encephalopathy 47  ISOFGF12 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:17576681 more ...
FGF12Green Monkeyepilepsy  ISOFGF12 (Homo sapiens)8554872ClinVar Annotator: match by term: SeizureClinVarPMID:25741868 more ...
FGF12Green Monkeygenetic disease  ISOFGF12 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
FGF12Green Monkeymyoclonic-atonic epilepsy  ISOFGF12 (Homo sapiens)8554872ClinVar Annotator: match by term: Early onset epileptic encephalopathyClinVarPMID:25741868 more ...
FGF12Green Monkeyschizophrenia  ISOFGF12 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FGF12Green MonkeyHepatomegaly  ISOFGF12 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:28108177
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FGF12Green Monkeydevelopmental and epileptic encephalopathy 47  ISOFGF12 (Homo sapiens)7240710 OMIM 


Biological Process
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FGF12Green Monkeyadult locomotory behavior acts_upstream_of_or_withinISOMGI:1091899068941 PMID:17678857MGIPMID:17678857
FGF12Green Monkeychemical synaptic transmission acts_upstream_of_or_withinISOMGI:1091899068941 PMID:17678857MGIPMID:17678857
FGF12Green Monkeyfibroblast growth factor receptor signaling pathway NOT|acts_upstream_of_or_withinISOFGF12 (Homo sapiens)9068941 PMID:12815063MGIPMID:12815063
FGF12Green MonkeyJNK cascade acts_upstream_of_or_withinISOUniProtKB:Q9ERE99068941 PMID:12815063MGIPMID:12815063
FGF12Green Monkeynegative regulation of cation channel activity  ISOFgf12 (Rattus norvegicus)9068941 RGDPMID:12401812 and REF_RGD_ID:6484231
FGF12Green Monkeyneuromuscular process acts_upstream_of_or_withinISOMGI:1091899068941 PMID:17678857MGIPMID:17678857
FGF12Green Monkeypositive regulation of sodium ion transport acts_upstream_of_or_withinISOMGI:1091899068941 PMID:17678857MGIPMID:17678857
FGF12Green Monkeyregulation of membrane depolarization involved_inISOFgf12 (Rattus norvegicus)9068941PMID:12401812BHF-UCLPMID:12401812 and REF_RGD_ID:6484231
FGF12Green Monkeyregulation of neuronal action potential involved_inISOFGF12 (Homo sapiens)9068941 PMID:27164707UniProtPMID:27164707
FGF12Green Monkeyregulation of sodium ion transmembrane transport involved_inISOFgf12 (Rattus norvegicus)9068941PMID:12401812BHF-UCLPMID:12401812 and REF_RGD_ID:6484231
FGF12Green Monkeyregulation of voltage-gated sodium channel activity involved_inISOFGF12 (Homo sapiens)9068941 PMID:27164707UniProtPMID:27164707
1 to 11 of 11 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FGF12Green Monkeynucleus located_inISOFGF12 (Homo sapiens)9068941 PMID:8790420MGIPMID:8790420

Molecular Function
1 to 12 of 12 rows

  
1 to 12 of 12 rows

PMID:22301074   PMID:30032202  



FGF12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11586,252,816 - 86,836,363 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604159,914,424 - 60,500,806 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FGF12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383192,139,390 - 192,727,541 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3192,139,390 - 192,767,764 (-)EnsemblGRCh38hg38GRCh38
GRCh373191,857,179 - 192,445,330 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363193,342,413 - 193,928,066 (-)NCBINCBI36Build 36hg18NCBI36
Build 343193,342,427 - 193,608,714NCBI
Celera3190,287,307 - 190,871,367 (-)NCBICelera
Cytogenetic Map3q28-q29NCBI
HuRef3189,257,496 - 189,843,496 (-)NCBIHuRef
CHM1_13191,820,291 - 192,408,216 (-)NCBICHM1_1
T2T-CHM13v2.03194,835,241 - 195,423,480 (-)NCBIT2T-CHM13v2.0
Fgf12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391627,976,535 - 28,571,995 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1627,978,850 - 28,571,820 (-)EnsemblGRCm39 Ensembl
GRCm381628,157,783 - 28,753,243 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1628,160,098 - 28,753,068 (-)EnsemblGRCm38mm10GRCm38
MGSCv371628,160,184 - 28,753,288 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361628,075,331 - 28,672,949 (-)NCBIMGSCv36mm8
Celera1628,680,820 - 29,265,446 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1619.38NCBI
Fgf12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81185,501,947 - 86,069,543 (+)NCBIGRCr8
mRatBN7.21171,997,151 - 72,564,757 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1171,997,099 - 72,562,607 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1180,835,781 - 81,403,369 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01173,470,763 - 74,038,380 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01172,528,137 - 73,092,997 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01175,606,360 - 76,171,078 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1175,905,443 - 76,168,989 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01178,647,628 - 79,212,339 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41174,208,696 - 74,481,037 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11174,266,284 - 74,538,626 (+)NCBI
Celera1171,257,632 - 71,518,401 (+)NCBICelera
Cytogenetic Map11q22NCBI
Fgf12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542016,070,096 - 16,306,103 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542015,783,184 - 16,310,743 (+)NCBIChiLan1.0ChiLan1.0
FGF12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22190,077,177 - 190,666,458 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13190,081,896 - 190,669,838 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03189,430,811 - 190,017,254 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13199,776,475 - 200,359,141 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3199,778,545 - 200,358,744 (-)Ensemblpanpan1.1panPan2
FGF12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13423,818,445 - 24,357,825 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3423,819,686 - 24,357,373 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3427,906,449 - 28,448,823 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03423,761,357 - 24,303,983 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3423,764,444 - 24,302,991 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13423,789,790 - 24,338,922 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03423,765,747 - 24,309,079 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03424,006,536 - 24,549,544 (-)NCBIUU_Cfam_GSD_1.0
Fgf12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602121,869,101 - 122,376,824 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367112,045,080 - 2,375,896 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367111,873,030 - 2,378,028 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13129,240,083 - 129,817,911 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113129,237,500 - 129,817,992 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213138,752,214 - 138,983,183 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Fgf12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473065,038,077 - 65,284,083 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473064,743,724 - 65,288,816 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in FGF12
16414 total Variants

1 to 10 of 873 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001199138.2(NLRC4):c.862C>G (p.Arg288Gly) single nucleotide variant Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV001853665]|not provided [RCV000521468] Chr2:32251002 [GRCh38]
Chr2:32476071 [GRCh37]
Chr2:2p22.3
uncertain significance
NM_001199138.2(NLRC4):c.1999C>T (p.Arg667Trp) single nucleotide variant not provided [RCV000523688] Chr2:32249865 [GRCh38]
Chr2:32474934 [GRCh37]
Chr2:2p22.3
uncertain significance
NM_001199138.2(NLRC4):c.1776C>T (p.Pro592=) single nucleotide variant Autoinflammatory syndrome [RCV002264295]|Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV001394564] Chr2:32250088 [GRCh38]
Chr2:32475157 [GRCh37]
Chr2:2p22.3
likely benign
NM_001199138.2(NLRC4):c.2785G>T (p.Ala929Ser) single nucleotide variant Autoinflammatory syndrome [RCV002263807]|NLRC4-related disorder [RCV003925705]|Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV000546974]|not provided [RCV002263806]|not specified [RCV001821634] Chr2:32224763 [GRCh38]
Chr2:32449832 [GRCh37]
Chr2:2p22.3
benign
NM_001199138.2(NLRC4):c.1022T>C (p.Val341Ala) single nucleotide variant Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV000144517]|Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV001857479]|Syndrome of entercolitis and autoinflmmation caused by mutation of NLRC4 (SCAN4) [RCV000132764]|not provided [RCV000434682] Chr2:32250842 [GRCh38]
Chr2:32475911 [GRCh37]
Chr2:2p22.3
pathogenic
GRCh38/hg38 2p25.3-16.1(chr2:66097-55570637)x3 copy number gain See cases [RCV000052933] Chr2:66097..55570637 [GRCh38]
Chr2:66097..55797773 [GRCh37]
Chr2:56097..55651277 [NCBI36]
Chr2:2p25.3-16.1
pathogenic
GRCh38/hg38 2p23.1-22.3(chr2:31370181-32512769)x1 copy number loss See cases [RCV000053981] Chr2:31370181..32512769 [GRCh38]
Chr2:31593047..32737836 [GRCh37]
Chr2:31446551..32591340 [NCBI36]
Chr2:2p23.1-22.3
pathogenic
NM_001199138.1(NLRC4):c.1912G>A (p.Glu638Lys) single nucleotide variant Malignant melanoma [RCV000065568] Chr2:32249952 [GRCh38]
Chr2:32475021 [GRCh37]
Chr2:32328525 [NCBI36]
Chr2:2p22.3
not provided
NM_001199138.1(NLRC4):c.1518G>A (p.Met506Ile) single nucleotide variant Malignant melanoma [RCV000065569] Chr2:32250346 [GRCh38]
Chr2:32475415 [GRCh37]
Chr2:32328919 [NCBI36]
Chr2:2p22.3
not provided
NM_001199138.1(NLRC4):c.2249G>A (p.Arg750Gln) single nucleotide variant Malignant melanoma [RCV000060559] Chr2:32249615 [GRCh38]
Chr2:32474684 [GRCh37]
Chr2:32328188 [NCBI36]
Chr2:2p22.3
not provided
1 to 10 of 873 rows






RefSeq Acc Id: XM_008009535   ⟹   XP_008007726
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11586,252,816 - 86,512,719 (-)NCBI
Vero_WHO_p1.0NW_02366604159,915,745 - 60,175,802 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008009536   ⟹   XP_008007727
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11586,252,816 - 86,626,562 (-)NCBI
Vero_WHO_p1.0NW_02366604159,915,745 - 60,290,182 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008009538   ⟹   XP_008007729
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11586,252,816 - 86,836,363 (-)NCBI
Vero_WHO_p1.0NW_02366604159,914,424 - 60,500,806 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038002368   ⟹   XP_037858296
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604159,914,424 - 60,500,768 (-)NCBI
Protein RefSeqs XP_008007726 (Get FASTA)   NCBI Sequence Viewer  
  XP_008007727 (Get FASTA)   NCBI Sequence Viewer  
  XP_008007729 (Get FASTA)   NCBI Sequence Viewer  
  XP_037858296 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_008007729   ⟸   XM_008009538
- Peptide Label: isoform X3
RefSeq Acc Id: XP_008007727   ⟸   XM_008009536
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008007726   ⟸   XM_008009535
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037858296   ⟸   XM_038002368
- Peptide Label: isoform X4



Database
Acc Id
Source(s)
NCBI Gene FGF12 ENTREZGENE