Symbol:
PDCD10
Name:
programmed cell death 10
RGD ID:
18751208
Description:
ENCODES a protein that exhibits protein homodimerization activity (inferred); protein kinase binding (inferred); INVOLVED IN cellular response to anoxia (ortholog); negative regulation of inflammatory response (ortholog); positive regulation of MAP kinase activity (ortholog); ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); cavernous hemangioma (ortholog); Central Nervous System Neoplasms (ortholog); FOUND IN cell periphery (ortholog); cytoplasm (ortholog); Golgi membrane (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
leucine-rich repeat extensin-like protein 5; LOC103221333; programmed cell death protein 10
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 15 21,697,366 - 21,748,760 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 15 21,706,675 - 21,749,470 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666063 30,541,167 - 30,592,646 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
PDCD10 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 15 21,697,366 - 21,748,760 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 15 21,706,675 - 21,749,470 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666063 30,541,167 - 30,592,646 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
PDCD10 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 3 167,683,298 - 167,734,892 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 3 167,683,298 - 167,734,939 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 3 167,401,086 - 167,452,680 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 3 168,884,388 - 168,935,345 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 3 168,884,398 - 168,935,332 NCBI Celera 3 165,800,144 - 165,851,087 (-) NCBI Celera Cytogenetic Map 3 q26.1 NCBI HuRef 3 164,771,770 - 164,822,713 (-) NCBI HuRef CHM1_1 3 167,364,579 - 167,415,523 (-) NCBI CHM1_1 T2T-CHM13v2.0 3 170,467,195 - 170,518,819 (-) NCBI T2T-CHM13v2.0
Pdcd10 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 3 75,423,797 - 75,464,159 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 3 75,423,797 - 75,464,163 (-) Ensembl GRCm39 Ensembl GRCm38 3 75,516,490 - 75,556,852 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 3 75,516,490 - 75,556,856 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 3 75,320,412 - 75,360,721 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 3 75,602,416 - 75,642,726 (-) NCBI MGSCv36 mm8 Celera 3 75,581,629 - 75,621,940 (-) NCBI Celera Cytogenetic Map 3 E3 NCBI cM Map 3 33.76 NCBI
Pdcd10 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 162,602,516 - 162,644,690 (-) NCBI GRCr8 mRatBN7.2 2 160,303,465 - 160,346,086 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 160,303,449 - 160,346,018 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 2 167,476,398 - 167,518,511 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 2 165,480,684 - 165,522,792 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 2 160,113,470 - 160,155,584 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 2 173,966,701 - 174,012,730 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 173,967,080 - 174,012,676 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 193,304,862 - 193,348,032 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 166,402,652 - 166,445,015 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 2 166,352,757 - 166,395,121 (-) NCBI Celera 2 154,499,050 - 154,540,946 (-) NCBI Celera Cytogenetic Map 2 q32 NCBI
Pdcd10 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955448 16,864,031 - 16,887,626 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955448 16,866,577 - 16,887,215 (-) NCBI ChiLan1.0 ChiLan1.0
PDCD10 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 2 165,583,937 - 165,635,162 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 3 165,588,664 - 165,639,889 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 3 164,703,909 - 164,755,085 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 3 172,760,923 - 172,811,900 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 3 172,760,923 - 172,811,430 (-) Ensembl panpan1.1 panPan2
PDCD10 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 34 32,512,109 - 32,553,524 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 34 32,512,112 - 32,553,445 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 34 41,592,572 - 41,634,550 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 34 32,590,535 - 32,632,534 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 34 32,584,275 - 32,632,464 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 34 32,535,691 - 32,577,676 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 34 32,496,175 - 32,538,163 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 34 32,767,820 - 32,809,818 (-) NCBI UU_Cfam_GSD_1.0
Pdcd10 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405602 98,930,028 - 98,971,364 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936593 4,651,114 - 4,692,534 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936593 4,650,624 - 4,693,387 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
PDCD10 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 13 106,517,432 - 106,558,895 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 13 106,517,408 - 106,558,959 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 13 115,080,081 - 115,120,768 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
Pdcd10
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSCSAT00000010595 ⟹ ENSCSAP00000008685
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 Ensembl 15 21,706,675 - 21,749,470 (+) Ensembl
RefSeq Acc Id:
XM_007972176 ⟹ XP_007970367
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 15 21,697,376 - 21,748,760 (+) NCBI Vero_WHO_p1.0 NW_023666063 30,541,167 - 30,592,646 (+) NCBI
Sequence:
GATCCGGGAGTTGAAGAGGGCTGCAAAGGTGGGAAGTGAAGTCAGTGCCTCAGTTGCTGCTTTCTCCTCTAAATCTTGGTCTCTTGTTTGGAAGTGACTAACAACGTTTTGGCATGAGAAAATCCTAA
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RefSeq Acc Id:
XM_007972177 ⟹ XP_007970368
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 15 21,697,366 - 21,748,760 (+) NCBI Vero_WHO_p1.0 NW_023666063 30,541,175 - 30,592,646 (+) NCBI
Sequence:
GGAGTGAATTGATCCGGGAGTTGAAGAGGGCTGCAAAGGTGGGAAGTGAAGTCAGTGCCTCAGT
hide sequence
RefSeq Acc Id:
XM_037988589 ⟹ XP_037844517
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source Vero_WHO_p1.0 NW_023666063 30,541,189 - 30,592,646 (+) NCBI
RefSeq Acc Id:
XM_037988590 ⟹ XP_037844518
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source Vero_WHO_p1.0 NW_023666063 30,541,597 - 30,592,646 (+) NCBI
RefSeq Acc Id:
XM_037988591 ⟹ XP_037844519
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source Vero_WHO_p1.0 NW_023666063 30,541,188 - 30,592,646 (+) NCBI
RefSeq Acc Id:
XM_037988592 ⟹ XP_037844520
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source Vero_WHO_p1.0 NW_023666063 30,541,645 - 30,592,646 (+) NCBI
RefSeq Acc Id:
XP_007970368 ⟸ XM_007972177
- UniProtKB:
A0A0D9RJ96 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_007970367 ⟸ XM_007972176
- UniProtKB:
A0A0D9RJ96 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSCSAP00000008685 ⟸ ENSCSAT00000010595
RefSeq Acc Id:
XP_037844519 ⟸ XM_037988591
- UniProtKB:
A0A0D9RJ96 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_037844517 ⟸ XM_037988589
- UniProtKB:
A0A0D9RJ96 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_037844518 ⟸ XM_037988590
- UniProtKB:
A0A0D9RJ96 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_037844520 ⟸ XM_037988592
- UniProtKB:
A0A0D9RJ96 (UniProtKB/TrEMBL)
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2020-12-03
PDCD10
programmed cell death 10
LOC103221333
leucine-rich repeat extensin-like protein 5
Data merged from RGD:18453687
737654 PROVISIONAL
