Pdcd10 (programmed cell death 10) - Rat Genome Database

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Gene: Pdcd10 (programmed cell death 10) Heterocephalus glaber
Analyze
Symbol: Pdcd10
Name: programmed cell death 10
RGD ID: 18926511
Description: ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN cellular response to anoxia (ortholog); cellular response to leukemia inhibitory factor (ortholog); establishment of Golgi localization (ortholog); ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); cavernous hemangioma (ortholog); Central Nervous System Neoplasms (ortholog); FOUND IN cell periphery (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Programmed cell death protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473045,654,022 - 45,678,745 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473045,653,470 - 45,698,461 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Pdcd10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473045,654,022 - 45,678,745 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473045,653,470 - 45,698,461 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PDCD10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383167,683,298 - 167,734,892 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3167,683,298 - 167,734,939 (-)EnsemblGRCh38hg38GRCh38
GRCh373167,401,086 - 167,452,680 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363168,884,388 - 168,935,345 (-)NCBINCBI36Build 36hg18NCBI36
Build 343168,884,398 - 168,935,332NCBI
Celera3165,800,144 - 165,851,087 (-)NCBICelera
Cytogenetic Map3q26.1NCBI
HuRef3164,771,770 - 164,822,713 (-)NCBIHuRef
CHM1_13167,364,579 - 167,415,523 (-)NCBICHM1_1
T2T-CHM13v2.03170,467,195 - 170,518,819 (-)NCBIT2T-CHM13v2.0
Pdcd10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39375,423,797 - 75,464,159 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl375,423,797 - 75,464,163 (-)EnsemblGRCm39 Ensembl
GRCm38375,516,490 - 75,556,852 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl375,516,490 - 75,556,856 (-)EnsemblGRCm38mm10GRCm38
MGSCv37375,320,412 - 75,360,721 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36375,602,416 - 75,642,726 (-)NCBIMGSCv36mm8
Celera375,581,629 - 75,621,940 (-)NCBICelera
Cytogenetic Map3E3NCBI
cM Map333.76NCBI
Pdcd10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82162,602,516 - 162,644,690 (-)NCBIGRCr8
mRatBN7.22160,303,465 - 160,346,086 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2160,303,449 - 160,346,018 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2167,476,398 - 167,518,511 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02165,480,684 - 165,522,792 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02160,113,470 - 160,155,584 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02173,966,701 - 174,012,730 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2173,967,080 - 174,012,676 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02193,304,862 - 193,348,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42166,402,652 - 166,445,015 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12166,352,757 - 166,395,121 (-)NCBI
Celera2154,499,050 - 154,540,946 (-)NCBICelera
Cytogenetic Map2q32NCBI
Pdcd10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544816,864,031 - 16,887,626 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544816,866,577 - 16,887,215 (-)NCBIChiLan1.0ChiLan1.0
PDCD10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22165,583,937 - 165,635,162 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13165,588,664 - 165,639,889 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03164,703,909 - 164,755,085 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13172,760,923 - 172,811,900 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3172,760,923 - 172,811,430 (-)Ensemblpanpan1.1panPan2
PDCD10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13432,512,109 - 32,553,524 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3432,512,112 - 32,553,445 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3441,592,572 - 41,634,550 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03432,590,535 - 32,632,534 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3432,584,275 - 32,632,464 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13432,535,691 - 32,577,676 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03432,496,175 - 32,538,163 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03432,767,820 - 32,809,818 (-)NCBIUU_Cfam_GSD_1.0
Pdcd10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560298,930,028 - 98,971,364 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365934,651,114 - 4,692,534 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365934,650,624 - 4,693,387 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDCD10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13106,517,432 - 106,558,895 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113106,517,408 - 106,558,959 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213115,080,081 - 115,120,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDCD10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11521,697,366 - 21,748,760 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1521,706,675 - 21,749,470 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606330,541,167 - 30,592,646 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027191   ⟹   ENSHGLP00000026952
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473045,654,022 - 45,678,745 (-)Ensembl
RefSeq Acc Id: XM_004834552   ⟹   XP_004834609
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473045,653,470 - 45,698,461 (-)NCBI
RefSeq Acc Id: XM_004834553   ⟹   XP_004834610
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473045,653,470 - 45,698,393 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004834609 (Get FASTA)   NCBI Sequence Viewer  
  XP_004834610 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA98256 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026952
  ENSHGLP00100061497
GenBank Protein JAO01082 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004834609   ⟸   XM_004834552
- UniProtKB: G5AMJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004834610   ⟸   XM_004834553
- UniProtKB: G5AMJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026952   ⟸   ENSHGLT00000027191


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019167 Ensembl, ENTREZGENE
  ENSHGLG00100039652 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000027191 ENTREZGENE
  ENSHGLT00100047742 UniProtKB/TrEMBL
Gene3D-CATH 1.10.12.70 UniProtKB/TrEMBL
  Nucleotidyltransferases domain 2 UniProtKB/TrEMBL
InterPro PDC10_dimerisation_sf UniProtKB/TrEMBL
  PDCD10 UniProtKB/TrEMBL
  PDCD10_N UniProtKB/TrEMBL
KEGG Report hgl:101715475 UniProtKB/TrEMBL
NCBI Gene Pdcd10 ENTREZGENE
PANTHER PROGRAMMED CELL DEATH PROTEIN 10 UniProtKB/TrEMBL
  PTHR13250 UniProtKB/TrEMBL
Pfam DUF1241 UniProtKB/TrEMBL
  PDCD10_N UniProtKB/TrEMBL
UniProt G5AMJ6 ENTREZGENE, UniProtKB/TrEMBL