PDCD10 (programmed cell death 10) - Rat Genome Database

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Gene: PDCD10 (programmed cell death 10) Canis lupus familiaris
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Symbol: PDCD10
Name: programmed cell death 10
RGD ID: 12209768
Description: ENCODES a protein that exhibits protein homodimerization activity (inferred); INVOLVED IN cellular response to anoxia (ortholog); cellular response to leukemia inhibitory factor (ortholog); negative regulation of inflammatory response (ortholog); ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); cavernous hemangioma (ortholog); Central Nervous System Neoplasms (ortholog); FOUND IN cell periphery (ortholog); cytoplasm (ortholog); Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: programmed cell death protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13432,512,109 - 32,553,524 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3432,512,112 - 32,553,445 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3441,592,572 - 41,634,550 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03432,590,535 - 32,632,534 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3432,584,275 - 32,632,464 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13432,535,691 - 32,577,676 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03432,496,175 - 32,538,163 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03432,767,820 - 32,809,818 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PDCD10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13432,512,109 - 32,553,524 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3432,512,112 - 32,553,445 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3441,592,572 - 41,634,550 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03432,590,535 - 32,632,534 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3432,584,275 - 32,632,464 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13432,535,691 - 32,577,676 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03432,496,175 - 32,538,163 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03432,767,820 - 32,809,818 (-)NCBIUU_Cfam_GSD_1.0
PDCD10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383167,683,298 - 167,734,892 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3167,683,298 - 167,734,939 (-)EnsemblGRCh38hg38GRCh38
GRCh373167,401,086 - 167,452,680 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363168,884,388 - 168,935,345 (-)NCBINCBI36Build 36hg18NCBI36
Build 343168,884,398 - 168,935,332NCBI
Celera3165,800,144 - 165,851,087 (-)NCBICelera
Cytogenetic Map3q26.1NCBI
HuRef3164,771,770 - 164,822,713 (-)NCBIHuRef
CHM1_13167,364,579 - 167,415,523 (-)NCBICHM1_1
T2T-CHM13v2.03170,467,195 - 170,518,819 (-)NCBIT2T-CHM13v2.0
Pdcd10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39375,423,797 - 75,464,159 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl375,423,797 - 75,464,163 (-)EnsemblGRCm39 Ensembl
GRCm38375,516,490 - 75,556,852 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl375,516,490 - 75,556,856 (-)EnsemblGRCm38mm10GRCm38
MGSCv37375,320,412 - 75,360,721 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36375,602,416 - 75,642,726 (-)NCBIMGSCv36mm8
Celera375,581,629 - 75,621,940 (-)NCBICelera
Cytogenetic Map3E3NCBI
cM Map333.76NCBI
Pdcd10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82162,602,516 - 162,644,690 (-)NCBIGRCr8
mRatBN7.22160,303,465 - 160,346,086 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2160,303,449 - 160,346,018 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2167,476,398 - 167,518,511 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02165,480,684 - 165,522,792 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02160,113,470 - 160,155,584 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02173,966,701 - 174,012,730 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2173,967,080 - 174,012,676 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02193,304,862 - 193,348,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42166,402,652 - 166,445,015 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12166,352,757 - 166,395,121 (-)NCBI
Celera2154,499,050 - 154,540,946 (-)NCBICelera
Cytogenetic Map2q32NCBI
Pdcd10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544816,864,031 - 16,887,626 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544816,866,577 - 16,887,215 (-)NCBIChiLan1.0ChiLan1.0
PDCD10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22165,583,937 - 165,635,162 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13165,588,664 - 165,639,889 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03164,703,909 - 164,755,085 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13172,760,923 - 172,811,900 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3172,760,923 - 172,811,430 (-)Ensemblpanpan1.1panPan2
Pdcd10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560298,930,028 - 98,971,364 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365934,651,114 - 4,692,534 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365934,650,624 - 4,693,387 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDCD10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13106,517,432 - 106,558,895 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113106,517,408 - 106,558,959 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213115,080,081 - 115,120,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDCD10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11521,697,366 - 21,748,760 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1521,706,675 - 21,749,470 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606330,541,167 - 30,592,646 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdcd10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473045,654,022 - 45,678,745 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473045,653,470 - 45,698,461 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PDCD10
451 total Variants

Sequence


Ensembl Acc Id: ENSCAFT00000023131   ⟹   ENSCAFP00000021475
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3432,512,112 - 32,553,445 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000088370   ⟹   ENSCAFP00000045973
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3432,512,112 - 32,522,735 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845034048   ⟹   ENSCAFP00845026651
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3432,584,275 - 32,616,531 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845034100   ⟹   ENSCAFP00845026695
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3432,586,811 - 32,632,459 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845034177   ⟹   ENSCAFP00845026756
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3432,591,117 - 32,632,464 (-)Ensembl
RefSeq Acc Id: XM_038445988   ⟹   XP_038301916
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03432,590,535 - 32,632,534 (-)NCBI
RefSeq Acc Id: XM_038520185   ⟹   XP_038376113
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13432,535,691 - 32,577,676 (-)NCBI
RefSeq Acc Id: XM_038583812   ⟹   XP_038439740
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03432,767,820 - 32,809,818 (-)NCBI
RefSeq Acc Id: XM_038648229   ⟹   XP_038504157
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03432,496,175 - 32,538,163 (-)NCBI
RefSeq Acc Id: XM_545269   ⟹   XP_545269
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13432,512,109 - 32,553,524 (-)NCBI
Dog10K_Boxer_Tasha3441,592,572 - 41,634,550 (-)NCBI
Sequence:
RefSeq Acc Id: XP_545269   ⟸   XM_545269
- UniProtKB: A0A8C0JJE5 (UniProtKB/TrEMBL),   A0A8C0S1G8 (UniProtKB/TrEMBL),   A0A8I3PGJ5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000045973   ⟸   ENSCAFT00000088370
Ensembl Acc Id: ENSCAFP00000021475   ⟸   ENSCAFT00000023131
RefSeq Acc Id: XP_038376113   ⟸   XM_038520185
RefSeq Acc Id: XP_038504157   ⟸   XM_038648229
RefSeq Acc Id: XP_038301916   ⟸   XM_038445988
- UniProtKB: A0A8C0JJE5 (UniProtKB/TrEMBL),   A0A8C0S1G8 (UniProtKB/TrEMBL),   A0A8I3PGJ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038439740   ⟸   XM_038583812
- UniProtKB: A0A8C0JJE5 (UniProtKB/TrEMBL),   A0A8C0S1G8 (UniProtKB/TrEMBL),   A0A8I3PGJ5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845026756   ⟸   ENSCAFT00845034177
Ensembl Acc Id: ENSCAFP00845026651   ⟸   ENSCAFT00845034048
Ensembl Acc Id: ENSCAFP00845026695   ⟸   ENSCAFT00845034100

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014569 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030012901 UniProtKB/TrEMBL
  ENSCAFG00040008949 UniProtKB/TrEMBL
  ENSCAFG00845019304 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000023131.5 UniProtKB/TrEMBL
  ENSCAFT00000099909.1 UniProtKB/TrEMBL
  ENSCAFT00000109137.1 UniProtKB/TrEMBL
  ENSCAFT00030023870.1 UniProtKB/TrEMBL
  ENSCAFT00030023963.1 UniProtKB/TrEMBL
  ENSCAFT00040016681.1 UniProtKB/TrEMBL
  ENSCAFT00040016751.1 UniProtKB/TrEMBL
  ENSCAFT00845034048.1 UniProtKB/TrEMBL
  ENSCAFT00845034100 ENTREZGENE
  ENSCAFT00845034100.1 UniProtKB/TrEMBL
  ENSCAFT00845034177.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.12.70 UniProtKB/TrEMBL
  1.20.120.1950 UniProtKB/TrEMBL
  Nucleotidyltransferases domain 2 UniProtKB/TrEMBL
InterPro PDC10_dimerisation_sf UniProtKB/TrEMBL
  PDCD10 UniProtKB/TrEMBL
  PDCD10_Homolog UniProtKB/TrEMBL
  PDCD10_N UniProtKB/TrEMBL
KEGG Report cfa:488145 UniProtKB/TrEMBL
NCBI Gene PDCD10 ENTREZGENE
PANTHER PROGRAMMED CELL DEATH PROTEIN 10 UniProtKB/TrEMBL
  PTHR13250 UniProtKB/TrEMBL
Pfam DUF1241 UniProtKB/TrEMBL
  PDCD10_N UniProtKB/TrEMBL
UniProt A0A8C0JJE5 ENTREZGENE
  A0A8C0ND39_CANLF UniProtKB/TrEMBL
  A0A8C0S1G8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P680_CANLF UniProtKB/TrEMBL
  A0A8I3PE49_CANLF UniProtKB/TrEMBL
  A0A8I3PGJ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TMP1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:53465 ENTREZGENE