KDSR (3-ketodihydrosphingosine reductase) - Rat Genome Database

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Gene: KDSR (3-ketodihydrosphingosine reductase) Chlorocebus sabaeus
Analyze
Symbol: KDSR
Name: 3-ketodihydrosphingosine reductase
RGD ID: 18750368
Description: ENCODES a protein that exhibits 3-dehydrosphinganine reductase activity (inferred); oxidoreductase activity (inferred); INVOLVED IN 3-keto-sphinganine metabolic process (inferred); lipid metabolic process (inferred); sphingolipid biosynthetic process (inferred); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); erythrokeratodermia variabilis et progressiva 4 (ortholog); follicular lymphoma (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11816,392,714 - 16,429,912 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1816,392,756 - 16,434,035 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660609,258,194 - 9,295,466 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDSRGreen Monkeyfollicular lymphoma  ISOKDSR (Homo sapiens)9068941 RGDPMID:8417785 and REF_RGD_ID:1598985
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDSRGreen Monkeychromosome 18q deletion syndrome  ISOKDSR (Homo sapiens)8554872ClinVar Annotator: match by term: Monosomy 18q and deletion 18qClinVarPMID:25741868 and PMID:31690835
KDSRGreen Monkeyerythrokeratodermia variabilis et progressiva 4  ISOKDSR (Homo sapiens)8554872ClinVar Annotator: match by term: Erythrokeratodermia variabilis et progressiva 4ClinVarPMID:25741868 more ...
KDSRGreen Monkeygenetic disease  ISOKDSR (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868
KDSRGreen Monkeymultiple congenital anomalies-hypotonia-seizures syndrome 1  ISOKDSR (Homo sapiens)8554872ClinVar Annotator: match by term: Multiple congenital anomalies-hypotonia-seizures syndrome 1ClinVarPMID:10677500 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDSRGreen Monkeyfollicular lymphoma  ISOKDSR (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25526675
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDSRGreen Monkeyerythrokeratodermia variabilis et progressiva 4  ISOKDSR (Homo sapiens)7240710 OMIM 


Biological Process
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDSRGreen Monkey3-keto-sphinganine metabolic process involved_inIEAPANTHER:PTN000673044150520179 TreeGrafterGO_REF:0000118
KDSRGreen Monkey3-keto-sphinganine metabolic process acts_upstream_of_or_withinIEAUniProtKB:Q06136 and ensembl:ENSP00000494352150520179 EnsemblGO_REF:0000107
KDSRGreen Monkey3-keto-sphinganine metabolic process involved_inIEAInterPro:IPR045022150520179 InterProGO_REF:0000002
KDSRGreen Monkeylipid metabolic process involved_inIEAUniProtKB-KW:KW-0443150520179 UniProtGO_REF:0000043
KDSRGreen Monkeysphingolipid biosynthetic process involved_inIEAPANTHER:PTN000673044150520179 TreeGrafterGO_REF:0000118
KDSRGreen Monkeysphingolipid biosynthetic process involved_inIEAARBA:ARBA00027455150520179 UniProtGO_REF:0000117
KDSRGreen Monkeysphingolipid biosynthetic process acts_upstream_of_or_withinIEAUniProtKB:Q6GV12 and ensembl:ENSMUSP00000010049150520179 EnsemblGO_REF:0000107
KDSRGreen Monkeysphingolipid biosynthetic process involved_inIEAInterPro:IPR045022150520179 InterProGO_REF:0000002
KDSRGreen Monkeysphingolipid biosynthetic process involved_inIEAUniProtKB:Q06136 and ensembl:ENSP00000494352150520179 EnsemblGO_REF:0000107
KDSRGreen Monkeysphingolipid metabolic process involved_inIEAUniProtKB-KW:KW-0746150520179 UniProtGO_REF:0000043
1 to 10 of 10 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDSRGreen Monkeyendoplasmic reticulum located_inIEAUniProtKB-KW:KW-0256150520179 UniProtGO_REF:0000043
KDSRGreen Monkeyendoplasmic reticulum located_inIEAUniProtKB-SubCell:SL-0095150520179 UniProtGO_REF:0000044
KDSRGreen Monkeyendoplasmic reticulum located_inIEAUniProtKB:Q06136 and ensembl:ENSP00000494352150520179 EnsemblGO_REF:0000107
KDSRGreen Monkeyendoplasmic reticulum membrane located_inIEAPANTHER:PTN000673044150520179 TreeGrafterGO_REF:0000118

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDSRGreen Monkey3-dehydrosphinganine reductase activity enablesIEAPANTHER:PTN000673044150520179 TreeGrafterGO_REF:0000118
KDSRGreen Monkey3-dehydrosphinganine reductase activity enablesIEAInterPro:IPR045022150520179 InterProGO_REF:0000002
KDSRGreen Monkey3-dehydrosphinganine reductase activity enablesIEAUniProtKB:Q06136 and ensembl:ENSP00000494352150520179 EnsemblGO_REF:0000107
KDSRGreen Monkeyoxidoreductase activity enablesIEAInterPro:IPR020904150520179 InterProGO_REF:0000002
KDSRGreen Monkeyoxidoreductase activity enablesIEAUniProtKB-KW:KW-0560150520179 UniProtGO_REF:0000043
KDSRGreen Monkeyprotein binding enablesISOUniProtKB:O60333-2 more ...9068941 PMID:32814053IntActPMID:32814053

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDSRGreen MonkeyFabry disease pathway  ISOKDSR (Homo sapiens)9068941 SMPDBSMP:00525
KDSRGreen MonkeyGaucher's disease pathway  ISOKDSR (Homo sapiens)9068941 SMPDBSMP:00349
KDSRGreen MonkeyKrabbe disease pathway  ISOKDSR (Homo sapiens)9068941 SMPDBSMP:00348
KDSRGreen Monkeymetachromatic leukodystrophy pathway  ISOKDSR (Homo sapiens)9068941 SMPDBSMP:00347
KDSRGreen Monkeysphingolipid metabolic pathway  ISOKDSR (Homo sapiens)9068941 SMPDBSMP:00034
PMID:22301074   PMID:30032202  



KDSR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11816,392,714 - 16,429,912 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1816,392,756 - 16,434,035 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660609,258,194 - 9,295,466 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
KDSR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381863,327,726 - 63,367,206 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1863,327,726 - 63,367,228 (-)EnsemblGRCh38hg38GRCh38
GRCh371860,994,959 - 61,034,439 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361859,145,951 - 59,185,486 (-)NCBINCBI36Build 36hg18NCBI36
Build 341859,148,812 - 59,185,438NCBI
Celera1857,714,472 - 57,754,142 (-)NCBICelera
Cytogenetic Map18q21.33NCBI
HuRef1857,693,465 - 57,733,080 (-)NCBIHuRef
CHM1_11860,990,909 - 61,030,493 (-)NCBICHM1_1
T2T-CHM13v2.01863,532,776 - 63,572,250 (-)NCBIT2T-CHM13v2.0
Kdsr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391106,648,140 - 106,689,544 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1106,648,189 - 106,687,457 (-)EnsemblGRCm39 Ensembl
GRCm381106,720,410 - 106,759,742 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1106,720,459 - 106,759,727 (-)EnsemblGRCm38mm10GRCm38
MGSCv371108,616,987 - 108,656,319 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361108,551,436 - 108,587,347 (-)NCBIMGSCv36mm8
Celera1109,569,745 - 109,609,088 (-)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map149.99NCBI
Kdsr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81323,374,101 - 23,408,779 (-)NCBIGRCr8
mRatBN7.21322,862,117 - 22,894,118 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1322,862,117 - 22,894,108 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1323,184,947 - 23,216,962 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01324,469,418 - 24,501,431 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01323,155,132 - 23,187,149 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01326,779,386 - 26,812,271 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1326,780,633 - 26,812,215 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01331,929,862 - 31,962,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41312,914,967 - 12,946,853 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11312,914,896 - 12,946,797 (-)NCBI
Celera1322,721,005 - 22,752,490 (-)NCBICelera
Cytogenetic Map13p11NCBI
Kdsr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540247,092,779 - 47,130,132 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540247,092,779 - 47,130,131 (-)NCBIChiLan1.0ChiLan1.0
KDSR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21780,840,824 - 80,878,698 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11866,530,449 - 66,571,494 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01856,686,914 - 56,727,681 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11860,003,576 - 60,040,365 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1860,001,637 - 60,036,292 (-)Ensemblpanpan1.1panPan2
KDSR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1113,682,838 - 13,726,872 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl113,689,246 - 13,723,528 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha114,654,928 - 14,692,956 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0113,550,434 - 13,588,484 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl113,550,483 - 13,585,739 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1113,588,547 - 13,626,566 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0113,517,813 - 13,555,882 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0113,766,595 - 13,804,675 (+)NCBIUU_Cfam_GSD_1.0
Kdsr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494426,931,216 - 26,960,699 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364972,169,712 - 2,203,150 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364972,169,982 - 2,199,600 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDSR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1158,288,544 - 158,329,881 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11158,288,544 - 158,329,898 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21175,775,310 - 175,822,928 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Kdsr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247929,040,999 - 9,082,154 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247929,038,076 - 9,081,650 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in KDSR
1113 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20


RefSeq Transcripts XM_008013865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008013866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000016289   ⟹   ENSCSAP00000014208
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1816,392,756 - 16,434,035 (+)Ensembl
RefSeq Acc Id: XM_008013865   ⟹   XP_008012056
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11816,392,714 - 16,429,912 (+)NCBI
Vero_WHO_p1.0NW_0236660609,258,194 - 9,295,466 (-)NCBI
Sequence:
Protein RefSeqs XP_008012056 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014208
  ENSCSAP00000014208.1
RefSeq Acc Id: XP_008012056   ⟸   XM_008013865
- UniProtKB: A0A0D9S019 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000014208   ⟸   ENSCSAT00000016289



1 to 17 of 17 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000018193 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016289.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro KDSR-like UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  Sc_DH/Rdtase_CS UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
KEGG Report csab:103244164 UniProtKB/TrEMBL
NCBI Gene KDSR ENTREZGENE
PANTHER 3-KETODIHYDROSPHINGOSINE REDUCTASE UniProtKB/TrEMBL
  3-KETODIHYDROSPHINGOSINE REDUCTASE UniProtKB/TrEMBL
Pfam adh_short UniProtKB/TrEMBL
PRINTS GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
PROSITE ADH_SHORT UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A0D9S019 ENTREZGENE, UniProtKB/TrEMBL
1 to 17 of 17 rows