KDSR (3-ketodihydrosphingosine reductase) - Rat Genome Database

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Gene: KDSR (3-ketodihydrosphingosine reductase) Sus scrofa
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Symbol: KDSR
Name: 3-ketodihydrosphingosine reductase
RGD ID: 14171323
Description: ENCODES a protein that exhibits 3-dehydrosphinganine reductase activity (inferred); oxidoreductase activity (inferred); oxidoreductase activity, acting on CH-OH group of donors (inferred); INVOLVED IN 3-keto-sphinganine metabolic process (ortholog); sphingolipid biosynthetic process (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); erythrokeratodermia variabilis et progressiva 4 (ortholog); follicular lymphoma (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1158,288,544 - 158,329,881 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11158,288,544 - 158,329,898 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21175,775,310 - 175,822,928 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KDSR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1158,288,544 - 158,329,881 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11158,288,544 - 158,329,898 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21175,775,310 - 175,822,928 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KDSR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381863,327,726 - 63,367,206 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1863,327,726 - 63,367,228 (-)EnsemblGRCh38hg38GRCh38
GRCh371860,994,959 - 61,034,439 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361859,145,951 - 59,185,486 (-)NCBINCBI36Build 36hg18NCBI36
Build 341859,148,812 - 59,185,438NCBI
Celera1857,714,472 - 57,754,142 (-)NCBICelera
Cytogenetic Map18q21.33NCBI
HuRef1857,693,465 - 57,733,080 (-)NCBIHuRef
CHM1_11860,990,909 - 61,030,493 (-)NCBICHM1_1
T2T-CHM13v2.01863,532,776 - 63,572,250 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in KDSR
909 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 3 4 4 1 2
Low 8 2 1 2 19 1 1 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000031522   ⟹   ENSSSCP00000019781
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1158,288,544 - 158,329,881 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000039219   ⟹   ENSSSCP00000040051
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1158,288,544 - 158,329,881 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000068024   ⟹   ENSSSCP00000064617
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1158,288,544 - 158,326,614 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000076201   ⟹   ENSSSCP00000067730
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1158,288,544 - 158,329,881 (+)Ensembl
RefSeq Acc Id: XM_001925913   ⟹   XP_001925948
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11158,288,544 - 158,329,898 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001925948 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000019781
  ENSSSCP00000019781.1
  ENSSSCP00000040051.2
  ENSSSCP00000064617.1
  ENSSSCP00000067730.1
  ENSSSCP00015035942.1
  ENSSSCP00015036040.1
  ENSSSCP00015036081.1
  ENSSSCP00015036109.1
  ENSSSCP00025001389.1
  ENSSSCP00025001397.1
  ENSSSCP00025001404.1
  ENSSSCP00025001409.1
  ENSSSCP00025001420.1
  ENSSSCP00025001423.1
  ENSSSCP00030035707.1
  ENSSSCP00030035724.1
  ENSSSCP00030035745.1
  ENSSSCP00030035750.1
  ENSSSCP00030035755.1
  ENSSSCP00030035771.1
  ENSSSCP00030035781.1
  ENSSSCP00035024235.1
  ENSSSCP00035024244.1
  ENSSSCP00035024254.1
  ENSSSCP00035024258.1
  ENSSSCP00035024264.1
  ENSSSCP00035024267.1
  ENSSSCP00040019701.1
  ENSSSCP00040019725.1
  ENSSSCP00040019731.1
  ENSSSCP00040019735.1
  ENSSSCP00045000685.1
  ENSSSCP00045000713.1
  ENSSSCP00045000719.1
  ENSSSCP00045000727.1
  ENSSSCP00045000751.1
  ENSSSCP00045000760.1
  ENSSSCP00050035225.1
  ENSSSCP00050035228.1
  ENSSSCP00050035229.1
  ENSSSCP00050035230.1
  ENSSSCP00050035231.1
  ENSSSCP00055040469.1
  ENSSSCP00055040573.1
  ENSSSCP00055040609.1
  ENSSSCP00055040666.1
  ENSSSCP00055040700.1
  ENSSSCP00060029764.1
  ENSSSCP00060029767.1
  ENSSSCP00060029768.1
  ENSSSCP00060029771.1
  ENSSSCP00060029775.1
  ENSSSCP00065028830.1
  ENSSSCP00065028832.1
  ENSSSCP00065028835.1
  ENSSSCP00065028837.1
  ENSSSCP00065028842.1
  ENSSSCP00065028845.1
  ENSSSCP00070018994.1
  ENSSSCP00070019007.1
  ENSSSCP00070019011.1
  ENSSSCP00070019027.1
  ENSSSCP00070019033.1
RefSeq Acc Id: XP_001925948   ⟸   XM_001925913
- UniProtKB: F1SMW5 (UniProtKB/TrEMBL),   A0A4X1TPM8 (UniProtKB/TrEMBL),   A0A287A8D8 (UniProtKB/TrEMBL),   A0A8D1GFC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000067730   ⟸   ENSSSCT00000076201
RefSeq Acc Id: ENSSSCP00000064617   ⟸   ENSSSCT00000068024
RefSeq Acc Id: ENSSSCP00000040051   ⟸   ENSSSCT00000039219
RefSeq Acc Id: ENSSSCP00000019781   ⟸   ENSSSCT00000031522

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025744 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015065616 UniProtKB/TrEMBL
  ENSSSCG00025002747 UniProtKB/TrEMBL
  ENSSSCG00030056042 UniProtKB/TrEMBL
  ENSSSCG00035045354 UniProtKB/TrEMBL
  ENSSSCG00040034881 UniProtKB/TrEMBL
  ENSSSCG00045000822 UniProtKB/TrEMBL
  ENSSSCG00050060210 UniProtKB/TrEMBL
  ENSSSCG00055025587 UniProtKB/TrEMBL
  ENSSSCG00060050811 UniProtKB/TrEMBL
  ENSSSCG00065048620 UniProtKB/TrEMBL
  ENSSSCG00070011763 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000031522 ENTREZGENE
  ENSSSCT00000031522.3 UniProtKB/TrEMBL
  ENSSSCT00000039219.3 UniProtKB/TrEMBL
  ENSSSCT00000068024.2 UniProtKB/TrEMBL
  ENSSSCT00000076201.1 UniProtKB/TrEMBL
  ENSSSCT00015088139.1 UniProtKB/TrEMBL
  ENSSSCT00015088365.1 UniProtKB/TrEMBL
  ENSSSCT00015088485.1 UniProtKB/TrEMBL
  ENSSSCT00015088555.1 UniProtKB/TrEMBL
  ENSSSCT00025003641.1 UniProtKB/TrEMBL
  ENSSSCT00025003662.1 UniProtKB/TrEMBL
  ENSSSCT00025003687.1 UniProtKB/TrEMBL
  ENSSSCT00025003696.1 UniProtKB/TrEMBL
  ENSSSCT00025003715.1 UniProtKB/TrEMBL
  ENSSSCT00025003720.1 UniProtKB/TrEMBL
  ENSSSCT00030078135.1 UniProtKB/TrEMBL
  ENSSSCT00030078169.1 UniProtKB/TrEMBL
  ENSSSCT00030078210.1 UniProtKB/TrEMBL
  ENSSSCT00030078220.1 UniProtKB/TrEMBL
  ENSSSCT00030078236.1 UniProtKB/TrEMBL
  ENSSSCT00030078275.1 UniProtKB/TrEMBL
  ENSSSCT00030078299.1 UniProtKB/TrEMBL
  ENSSSCT00035060278.1 UniProtKB/TrEMBL
  ENSSSCT00035060292.1 UniProtKB/TrEMBL
  ENSSSCT00035060314.1 UniProtKB/TrEMBL
  ENSSSCT00035060319.1 UniProtKB/TrEMBL
  ENSSSCT00035060336.1 UniProtKB/TrEMBL
  ENSSSCT00035060341.1 UniProtKB/TrEMBL
  ENSSSCT00040047009.1 UniProtKB/TrEMBL
  ENSSSCT00040047079.1 UniProtKB/TrEMBL
  ENSSSCT00040047098.1 UniProtKB/TrEMBL
  ENSSSCT00040047113.1 UniProtKB/TrEMBL
  ENSSSCT00045001218.1 UniProtKB/TrEMBL
  ENSSSCT00045001262.1 UniProtKB/TrEMBL
  ENSSSCT00045001272.1 UniProtKB/TrEMBL
  ENSSSCT00045001284.1 UniProtKB/TrEMBL
  ENSSSCT00045001314.1 UniProtKB/TrEMBL
  ENSSSCT00045001326.1 UniProtKB/TrEMBL
  ENSSSCT00050082038.1 UniProtKB/TrEMBL
  ENSSSCT00050082043.1 UniProtKB/TrEMBL
  ENSSSCT00050082047.1 UniProtKB/TrEMBL
  ENSSSCT00050082048.1 UniProtKB/TrEMBL
  ENSSSCT00050082049.1 UniProtKB/TrEMBL
  ENSSSCT00055050611.1 UniProtKB/TrEMBL
  ENSSSCT00055050737.1 UniProtKB/TrEMBL
  ENSSSCT00055050789.1 UniProtKB/TrEMBL
  ENSSSCT00055050856.1 UniProtKB/TrEMBL
  ENSSSCT00055050911.1 UniProtKB/TrEMBL
  ENSSSCT00060069162.1 UniProtKB/TrEMBL
  ENSSSCT00060069167.1 UniProtKB/TrEMBL
  ENSSSCT00060069170.1 UniProtKB/TrEMBL
  ENSSSCT00060069179.1 UniProtKB/TrEMBL
  ENSSSCT00060069187.1 UniProtKB/TrEMBL
  ENSSSCT00065066514.1 UniProtKB/TrEMBL
  ENSSSCT00065066522.1 UniProtKB/TrEMBL
  ENSSSCT00065066529.1 UniProtKB/TrEMBL
  ENSSSCT00065066531.1 UniProtKB/TrEMBL
  ENSSSCT00065066537.1 UniProtKB/TrEMBL
  ENSSSCT00065066540.1 UniProtKB/TrEMBL
  ENSSSCT00070022958.1 UniProtKB/TrEMBL
  ENSSSCT00070022973.1 UniProtKB/TrEMBL
  ENSSSCT00070022982.1 UniProtKB/TrEMBL
  ENSSSCT00070023014.1 UniProtKB/TrEMBL
  ENSSSCT00070023021.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.437.10 UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro Apop_reg_Bcl2 UniProtKB/TrEMBL
  Bcl-2_BH1-3 UniProtKB/TrEMBL
  Bcl2-like UniProtKB/TrEMBL
  Bcl2_BH1_motif_CS UniProtKB/TrEMBL
  Bcl2_BH3_motif_CS UniProtKB/TrEMBL
  Bcl2_BH4 UniProtKB/TrEMBL
  Bcl2_BH4_motif_CS UniProtKB/TrEMBL
  Blc2-like_sf UniProtKB/TrEMBL
  Blc2_fam UniProtKB/TrEMBL
  KDSR-like UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  Sc_DH/Rdtase_CS UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
KEGG Report ssc:100152988 UniProtKB/TrEMBL
NCBI Gene KDSR ENTREZGENE
PANTHER 3-KETODIHYDROSPHINGOSINE REDUCTASE UniProtKB/TrEMBL
  3-KETODIHYDROSPHINGOSINE REDUCTASE UniProtKB/TrEMBL
  PTHR11256 UniProtKB/TrEMBL
  PTHR11256:SF11 UniProtKB/TrEMBL
Pfam adh_short UniProtKB/TrEMBL
  Bcl-2 UniProtKB/TrEMBL
  BH4 UniProtKB/TrEMBL
PRINTS APOPREGBCL2 UniProtKB/TrEMBL
  BCL2FAMILY UniProtKB/TrEMBL
  GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
PROSITE ADH_SHORT UniProtKB/TrEMBL
  BCL2_FAMILY UniProtKB/TrEMBL
  BH1 UniProtKB/TrEMBL
  BH3 UniProtKB/TrEMBL
  BH4_1 UniProtKB/TrEMBL
  BH4_2 UniProtKB/TrEMBL
SMART BCL UniProtKB/TrEMBL
  BH4 UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
  SSF56854 UniProtKB/TrEMBL
UniProt A0A287A8D8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TPL5_PIG UniProtKB/TrEMBL
  A0A4X1TPM8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TRU3_PIG UniProtKB/TrEMBL
  A0A4X1TUJ9_PIG UniProtKB/TrEMBL
  A0A4X1TUL2_PIG UniProtKB/TrEMBL
  A0A5G2QJG8_PIG UniProtKB/TrEMBL
  A0A5G2QS28_PIG UniProtKB/TrEMBL
  A0A8D0QLD9_PIG UniProtKB/TrEMBL
  A0A8D1CD69_PIG UniProtKB/TrEMBL
  A0A8D1GFC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RUT6_PIG UniProtKB/TrEMBL
  A0A8D1VT71_PIG UniProtKB/TrEMBL
  F1SMW5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:108157 ENTREZGENE