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Gene: TAF1A (TATA-box binding protein associated factor, RNA polymerase I subunit A) Chlorocebus sabaeus

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Symbol:

TAF1A

Name:

TATA-box binding protein associated factor, RNA polymerase I subunit A

RGD ID:

18720238

Description:

ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN transcription by RNA polymerase I (inferred); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH dilated cardiomyopathy (ortholog); familial restrictive cardiomyopathy 6 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN microtubule cytoskeleton (inferred); nucleolus (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

TATA box-binding protein-associated factor RNA polymerase I subunit A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	6,982,714 - 7,014,699 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	6,982,784 - 7,014,877 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	7,221,347 - 7,253,346 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TAF1A	Green Monkey	dilated cardiomyopathy		ISO	RGD:1313879	8554872	ClinVar Annotator: match by term: Primary dilated cardiomyopathy	ClinVar	PMID:25741868
TAF1A	Green Monkey	familial restrictive cardiomyopathy 6		ISO	RGD:1313879	8554872	ClinVar Annotator: match by term: Cardiomyopathy, familial restrictive, 6	ClinVar	PMID:25741868
TAF1A	Green Monkey	gastrointestinal stromal tumor		ISO	RGD:1313879	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
TAF1A	Green Monkey	Loeys-Dietz syndrome 4		ISO	RGD:1313879	8554872	ClinVar Annotator: match by term: Loeys-Dietz syndrome 4	ClinVar	PMID:22772368\|PMID:28544325
TAF1A	Green Monkey	parathyroid carcinoma		ISO	RGD:1313879	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532
TAF1A	Green Monkey	Usher syndrome		ISO	RGD:1313879	8554872	ClinVar Annotator: match by term: Usher syndrome	ClinVar	PMID:28041643

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TAF1A	Green Monkey	transcription by RNA polymerase I	involved_in	IEA	InterPro:IPR016629\|InterPro:IPR039495	150520179		InterPro	GO_REF:0000002
TAF1A	Green Monkey	transcription by RNA polymerase I	involved_in	IEA	UniRule:UR001528769	150520179		UniProt	GO_REF:0000104

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TAF1A	Green Monkey	microtubule cytoskeleton	located_in	IEA	UniProtKB:Q15573\|ensembl:ENSP00000327072	150520179		Ensembl	GO_REF:0000107
TAF1A	Green Monkey	nucleolus	located_in	IEA	UniProtKB-SubCell:SL-0188	150520179		UniProt	GO_REF:0000044
TAF1A	Green Monkey	nucleoplasm	located_in	IEA	UniProtKB:Q15573\|ensembl:ENSP00000327072	150520179		Ensembl	GO_REF:0000107
TAF1A	Green Monkey	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043
TAF1A	Green Monkey	RNA polymerase I transcription regulator complex	part_of	IEA	UniRule:UR001528769	150520179		UniProt	GO_REF:0000104
TAF1A	Green Monkey	RNA polymerase I transcription regulator complex	part_of	IEA	InterPro:IPR016629\|InterPro:IPR039495	150520179		InterPro	GO_REF:0000002
TAF1A	Green Monkey	RNA polymerase transcription factor SL1 complex	part_of	IEA	UniProtKB:P97357\|UniProtKB:Q15573\|ensembl:ENSMUSP00000142213\|ensembl:ENSP00000327072	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TAF1A	Green Monkey	DNA binding	enables	IEA	UniProtKB-KW:KW-0238	150520179		UniProt	GO_REF:0000043
TAF1A	Green Monkey	DNA binding	enables	IEA	UniRule:UR001528769	150520179		UniProt	GO_REF:0000104
TAF1A	Green Monkey	protein binding	enables	ISO	UniProtKB:P05554	9068941	PMID:20075868	UniProt	PMID:20075868
TAF1A	Green Monkey	protein binding	enables	ISO	PR:Q76KJ5	9068941	PMID:15226435	MGI	PMID:15226435
TAF1A	Green Monkey	protein binding	enables	ISO	UniProtKB:P29037	9068941	PMID:28893950	MGI	PMID:28893950
TAF1A	Green Monkey	protein binding	enables	ISO	PR:P29037\|PR:P97358\|PR:Q6PDZ2	9068941	PMID:9050847	MGI	PMID:9050847
TAF1A	Green Monkey	protein binding	enables	ISO	UniProtKB:Q6ZUT1\|UniProtKB:Q6ZUT1-2	9068941	PMID:25416956	IntAct	PMID:25416956
TAF1A	Green Monkey	protein binding	enables	ISO	UniProtKB:P20226\|UniProtKB:Q01105\|UniProtKB:Q53T94	9068941	PMID:17318177	IntAct	PMID:17318177
TAF1A	Green Monkey	protein binding	enables	ISO	UniProtKB:P20226	9068941	PMID:26496610, PMID:35271311	IntAct	PMID:26496610\|PMID:35271311
TAF1A	Green Monkey	protein binding	enables	ISO	UniProtKB:P20226\|UniProtKB:Q53T94	9068941	PMID:33961781	IntAct	PMID:33961781

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TAF1A	Green Monkey	RNA polymerase I transcription pathway		ISO	RGD:1313879	9068941		RGD	PMID:21893173\|PMID:22960599\|REF_RGD_ID:9588243\|REF_RGD_ID:9588244

PMID:22301074

TAF1A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	6,982,714 - 7,014,699 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	6,982,784 - 7,014,877 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	7,221,347 - 7,253,346 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TAF1A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	222,554,105 - 222,589,933 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	222,557,902 - 222,589,933 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	222,731,244 - 222,763,275 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	220,798,288 - 220,829,878 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	195,950,756 - 195,982,347 (-)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI
HuRef	1	193,405,361 - 193,437,394 (-)	NCBI		HuRef
CHM1_1	1	224,003,859 - 224,035,892 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	221,788,155 - 221,823,679 (-)	NCBI		T2T-CHM13v2.0

Taf1a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	183,170,251 - 183,195,776 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	183,170,325 - 183,191,020 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	183,388,885 - 183,410,201 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	183,388,981 - 183,410,198 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	1	190,389,770 - 190,410,706 (+)	NCBI		Celera
Cytogenetic Map	1	H5	NCBI

Taf1a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	97,543,772 - 97,579,742 (+)	NCBI		GRCr8
mRatBN7.2	13	95,012,160 - 95,048,131 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	95,029,225 - 95,048,087 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	97,517,521 - 97,552,491 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	98,917,328 - 98,952,276 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	96,099,474 - 96,134,437 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	101,770,278 - 101,807,975 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	101,790,865 - 101,806,900 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	100,975,811 - 101,010,982 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	99,475,709 - 99,484,662 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	99,528,622 - 99,673,546 (+)	NCBI
Celera	13	94,538,515 - 94,573,430 (+)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

Taf1a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955520	1,901,405 - 1,921,900 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955520	1,900,802 - 1,921,350 (+)	NCBI	ChiLan1.0	ChiLan1.0

TAF1A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	26,730,903 - 26,768,465 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	26,684,291 - 26,720,548 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	198,227,332 - 198,263,133 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	203,244,796 - 203,276,849 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	203,244,796 - 203,276,872 (-)	Ensembl	panpan1.1		panPan2

TAF1A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	16,827,853 - 16,858,506 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	16,828,205 - 16,858,432 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	16,883,269 - 16,914,352 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	16,873,236 - 16,904,338 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	16,873,247 - 16,904,285 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	16,878,704 - 16,909,772 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	17,228,367 - 17,259,637 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	17,522,309 - 17,553,821 (-)	NCBI		UU_Cfam_GSD_1.0

Taf1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	54,751,797 - 54,756,740 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936650	7 - 6,758 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TAF1A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	11,340,642 - 11,362,432 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	11,340,637 - 11,362,432 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	13,449,697 - 13,471,491 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Taf1a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624835	5,121,299 - 5,144,732 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624835	5,121,496 - 5,144,904 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in TAF1A
697 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20


RefSeq Transcripts	XM_007988374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073011505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JBLKOC010000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000013982 ⟹ ENSCSAP00000011963

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	25	6,982,784 - 7,014,877 (+)	Ensembl

RefSeq Acc Id:

XM_007988374 ⟹ XP_007986565

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	6,982,714 - 7,014,696 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	7,221,347 - 7,253,346 (+)	NCBI

Sequence:

show sequence

CGGGGTCGAGGCGAGGCCAACAATACGCCTGCTACCGCAGGAGTTACGAGCTGGGCCGCGCGCAGCCTGAATGCCTAAACCAGGTTTTGCGCATGCTCATATAAAGCTCTCCTAACCCGTCTTCCGGT
GGGAATTTCTTCACGTGGTTCGGAGTCGGAGACTGAGTTTAGCTTTACTGAGGAGCTCTAATTTTAAGCGGGTATGAGTGATTTCAGTGAAGAATTAAAAGGGCCTGTGACAGATGATGAAGTGGAAA
CATCTGTGCTGACTGGGGCAGGAATGCATTTTCCTTGGCTTCAAACATACGTAGAAACTGTGGCCATTGGAGGGAAAAGGAAGAAGGATTTTGCTCAGACAACAAGTGCTTGTTTAAGTTTTATCCAA
GAAGCTCTGCTGAAGCACCAATGGCAGCAAGCTGCAGAATACATGTACAGTTATTTTCAGACCTTGGAAGATTCAGATAGCTACAAAAGGCAGGCTGCACCTGAGATTATTTGGAAGCTTGGAAGTGA
AATTCTATTTTATCATCCCAAAAGCAACATGGAGACTTTCAATACTTTTGCTGACCGGATGAAAAATATTGGCGTCATGAATTATTTAAAGATCTCCTTACAACATGCATTATACCTTCTGCATCATG
GAATGCTTAAAGATGCTAAGAGAAATCTGAGTGAGGCAGAGACATGGAGACATGGTGAAAACACGTCTTCCCGGGGAATATTAATCAACCTTATTCAGGCCTATAAAGGGCTTTTACAGTATTACACC
TGGTCTAAAAAGAAGATGGAATTGTCAAAGCTTGATAAGGATGATTATGCTTACAACGCAGTAGCCCAGGATGTGTTCAACCACAGCTGGAAGACATCTGCAAATATTTCTGCATTGATTAAAATTCC
TGGAGTTTGGGACCCTTTTGTGAAGAGTTATGTAGAAATGCTGGAATTCTATGGGGATCGAGATGGAGCCCAAGAGGTACTCACTAATTATGCATATGATGAAAAGTTTCCATCAAATCCAAATGCCC
ATATCTACTTATACAACTTTCTAAAGAGACAGAAGGCACCAAGATCAAAAATGATAAGTGTGCTTAAGATTTTGTATCAGATTGTACCATCTCATAAATTGATGTTGGAATTCCATACATTACTTAGA
AAATCAGAAAAAGAAGAACACCGTAAACTGGGATTGGAGGTATTATTTGGAGTCTTAGATTTTGCCGGATGCACTAAGAATATAACTGCTTGGAAATACTTGGCAAAATATCTGAAAAAGACCTTAAT
GGGAAACCACCTTGCGTGGGTTCAAGATGAGTGGAACTCCAGGAAAAACTGGTGGCCAAACTTTCATTTCAGCTACTTTTGGGCAAAAAGTGATTGGAAGGAAGATACAGCTTTGGCCTGTGAGAAAG
CTTTTGTGGCTGGATTACTGTTAGGAAAAGGTTGTAGATATTTTCGGTATATTTTAAAGCAAGATCACCAAATCTTAGGGAAGAAAATTAAGCGGATGAAGAGATCTGTGAAAAAATACAGTATTGTA
AATCCAAGACTCTCATACTGAATTTTAGTTATTTCACAGTAGTAGCTACACAGTAAGTAGCTCAGTAGATAGTTATTGAATGTGTTTATGTAGTTATGTGTTATGTATTAAGAAGCTTATATTACTAC
AAAAAACTTATTTTTATATATTTTTATATTTTTGTATTATTTATAGCTAGAGAAACAGTATTACTGCCTTTGCTCTTTGTAACTTTGTCTGTTTTCTTTTTTGTAATGTTAAATGTTACATTTGTTAA
AGAATAATTCTTCAAATGACAAAATATTAGAGAATATAGTTCTACAGCAGTTATTGTTTGCAAATTCTTTGCCTCTGGCTATTGTGTAATAAATGATAACTTGTGGTGCTGTGA

hide sequence

RefSeq Acc Id:

XM_007988375 ⟹ XP_007986566

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	6,982,825 - 7,014,696 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	7,221,358 - 7,253,346 (+)	NCBI

Sequence:

show sequence

CTAACCCGTCTTCCGGTGGGAATTTCTTCACGTGGTTCGGAGTCGGAGACTGAGTTTAGCTTTACTGAGGAGCTCTAATTTTAAGCGGTTTGTAATAGGTATGAGTGATTTCAGTGAAGAATTAAAAG
GGCCTGTGACAGATGATGAAGTGGAAACATCTGTGCTGACTGGGGCAGGAATGCATTTTCCTTGGCTTCAAACATACGTAGAAACTGTGGCCATTGGAGGGAAAAGGAAGAAGGATTTTGCTCAGACA
ACAAGTGCTTGTTTAAGTTTTATCCAAGAAGCTCTGCTGAAGCACCAATGGCAGCAAGCTGCAGAATACATGTACAGTTATTTTCAGACCTTGGAAGATTCAGATAGCTACAAAAGGCAGGCTGCACC
TGAGATTATTTGGAAGCTTGGAAGTGAAATTCTATTTTATCATCCCAAAAGCAACATGGAGACTTTCAATACTTTTGCTGACCGGATGAAAAATATTGGCGTCATGAATTATTTAAAGATCTCCTTAC
AACATGCATTATACCTTCTGCATCATGGAATGCTTAAAGATGCTAAGAGAAATCTGAGTGAGGCAGAGACATGGAGACATGGTGAAAACACGTCTTCCCGGGGAATATTAATCAACCTTATTCAGGCC
TATAAAGGGCTTTTACAGTATTACACCTGGTCTAAAAAGAAGATGGAATTGTCAAAGCTTGATAAGGATGATTATGCTTACAACGCAGTAGCCCAGGATGTGTTCAACCACAGCTGGAAGACATCTGC
AAATATTTCTGCATTGATTAAAATTCCTGGAGTTTGGGACCCTTTTGTGAAGAGTTATGTAGAAATGCTGGAATTCTATGGGGATCGAGATGGAGCCCAAGAGGTACTCACTAATTATGCATATGATG
AAAAGTTTCCATCAAATCCAAATGCCCATATCTACTTATACAACTTTCTAAAGAGACAGAAGGCACCAAGATCAAAAATGATAAGTGTGCTTAAGATTTTGTATCAGATTGTACCATCTCATAAATTG
ATGTTGGAATTCCATACATTACTTAGAAAATCAGAAAAAGAAGAACACCGTAAACTGGGATTGGAGGTATTATTTGGAGTCTTAGATTTTGCCGGATGCACTAAGAATATAACTGCTTGGAAATACTT
GGCAAAATATCTGAAAAAGACCTTAATGGGAAACCACCTTGCGTGGGTTCAAGATGAGTGGAACTCCAGGAAAAACTGGTGGCCAAACTTTCATTTCAGCTACTTTTGGGCAAAAAGTGATTGGAAGG
AAGATACAGCTTTGGCCTGTGAGAAAGCTTTTGTGGCTGGATTACTGTTAGGAAAAGGTTGTAGATATTTTCGGTATATTTTAAAGCAAGATCACCAAATCTTAGGGAAGAAAATTAAGCGGATGAAG
AGATCTGTGAAAAAATACAGTATTGTAAATCCAAGACTCTCATACTGAATTTTAGTTATTTCACAGTAGTAGCTACACAGTAAGTAGCTCAGTAGATAGTTATTGAATGTGTTTATGTAGTTATGTGT
TATGTATTAAGAAGCTTATATTACTACAAAAAACTTATTTTTATATATTTTTATATTTTTGTATTATTTATAGCTAGAGAAACAGTATTACTGCCTTTGCTCTTTGTAACTTTGTCTGTTTTCTTTTT
TGTAATGTTAAATGTTACATTTGTTAAAGAATAATTCTTCAAATGACAAAATATTAGAGAATATAGTTCTACAGCAGTTATTGTTTGCAAATTCTTTGCCTCTGGCTATTGTGTAATAAATGATAACT
TGTGGTGCTGTGA

hide sequence

RefSeq Acc Id:

XM_007988376 ⟹ XP_007986567

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	6,982,819 - 7,014,696 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	7,221,377 - 7,253,346 (+)	NCBI

Sequence:

show sequence

GCTCTCCTAACCCGTCTTCCGGTGGGAATTTCTTCACGTGGTTCGGAGTCGGAGACTGAGTTTA
GCTTTACTGAGGAGCTCTAATTTTAAGCGGGTATGAGTGATTTCAGTGAAGAATTAAAAGGGCCTGTGACAGATGATGAAGTGGAAACATCTGTGCTGACTGGGGCAGGAATGCATTTTCCTTGGCTT
CAAACATACGTAGAAACTGTGGCCATTGGAGGGAAAAGGAAGAAGGATTTTGCTCAGACAACAAGTGCTTGTTTAAGTTTTATCCAAGAAGCTCTGCTGAAGCACCAATGGCAGCAAGCTGCAGAATA
CATGTACAGTTATTTTCAGACCTTGGAAGATTCAGATAGCTACAAAAGGCAGGCTGCACCTGAGATTATTTGGAAGCTTGGAAGTGAAATTCTATTTTATCATCCCAAAAGCAACATGGAGACTTTCA
ATACTTTTGCTGACCGGATGAAAAATATTGGCGTCATGAATTATTTAAAGATCTCCTTACAACATGCATTATACCTTCTGCATCATGGAATGCTTAAAGATGCTAAGAGAAATCTGAGTGAGGCAGAG
ACATGGAGACATGGTGAAAACACGTCTTCCCGGGGAATATTAATCAACCTTATTCAGGCCTATAAAGGGCTTTTACAGTATTACACCTGGTCTAAAAAGAAGATGGAATTGTCAAAGCTTGATAAGGA
TGATTATGCTTACAACGCAGTAGCCCAGGATGTGTTCAACCACAGCTGGAAGACATCTGCAAATATTTCTGCATTGATTAAAATTCCTGGAGTTTGGGACCCTTTTGTGAAGAGTTATGTAGAAATTT
TGTATCAGATTGTACCATCTCATAAATTGATGTTGGAATTCCATACATTACTTAGAAAATCAGAAAAAGAAGAACACCGTAAACTGGGATTGGAGGTATTATTTGGAGTCTTAGATTTTGCCGGATGC
ACTAAGAATATAACTGCTTGGAAATACTTGGCAAAATATCTGAAAAAGACCTTAATGGGAAACCACCTTGCGTGGGTTCAAGATGAGTGGAACTCCAGGAAAAACTGGTGGCCAAACTTTCATTTCAG
CTACTTTTGGGCAAAAAGTGATTGGAAGGAAGATACAGCTTTGGCCTGTGAGAAAGCTTTTGTGGCTGGATTACTGTTAGGAAAAGGTTGTAGATATTTTCGGTATATTTTAAAGCAAGATCACCAAA
TCTTAGGGAAGAAAATTAAGCGGATGAAGAGATCTGTGAAAAAATACAGTATTGTAAATCCAAGACTCTCATACTGAATTTTAGTTATTTCACAGTAGTAGCTACACAGTAAGTAGCTCAGTAGATAG
TTATTGAATGTGTTTATGTAGTTATGTGTTATGTATTAAGAAGCTTATATTACTACAAAAAACTTATTTTTATATATTTTTATATTTTTGTATTATTTATAGCTAGAGAAACAGTATTACTGCCTTTG
CTCTTTGTAACTTTGTCTGTTTTCTTTTTTGTAATGTTAAATGTTACATTTGTTAAAGAATAATTCTTCAAATGACAAAATATTAGAGAATATAGTTCTACAGCAGTTATTGTTTGCAAATTCTTTGC
CTCTGGCTATTGTGTAATAAATGATAACTTGTGGTGCTGTGA

hide sequence

RefSeq Acc Id:

XM_007988378 ⟹ XP_007986569

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	6,982,714 - 7,014,696 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	7,221,347 - 7,253,346 (+)	NCBI

Sequence:

show sequence

CGGGGTCGAGGCGAGGCCAACAATACGCCTGCTACCGCAGGAGTTACGAGCTGGGCCGCGCGCA
GCCTGAATGCCTAAACCAGGTTTTGCGCATGCTCATATAAAGCTCTCCTAACCCGTCTTCCGGTGGGAATTTCTTCACGTGGTTCGGAGTCGGAGACTGAGTTTAGCTTTACTGAGGAGCTCTAATTT
TAAGCGGGTATGAGTGATTTCAGTGAAGAATTAAAAGGGCCTGTGACAGATGATGAAGTGGAAACATCTGTGCTGACTGGGGCAGGAATGCATTTTCCTTGGCTTCAAACATACGTAGAAACTGTGGA
TTATTTGGAAGCTTGGAAGTGAAATTCTATTTTATCATCCCAAAAGCAACATGGAGACTTTCAATACTTTTGCTGACCGGATGAAAAATATTGGCGTCATGAATTATTTAAAGATCTCCTTACAACAT
GCATTATACCTTCTGCATCATGGAATGCTTAAAGATGCTAAGAGAAATCTGAGTGAGGCAGAGACATGGAGACATGGTGAAAACACGTCTTCCCGGGGAATATTAATCAACCTTATTCAGGCCTATAA
AGGGCTTTTACAGTATTACACCTGGTCTAAAAAGAAGATGGAATTGTCAAAGCTTGATAAGGATGATTATGCTTACAACGCAGTAGCCCAGGATGTGTTCAACCACAGCTGGAAGACATCTGCAAATA
TTTCTGCATTGATTAAAATTCCTGGAGTTTGGGACCCTTTTGTGAAGAGTTATGTAGAAATGCTGGAATTCTATGGGGATCGAGATGGAGCCCAAGAGGTACTCACTAATTATGCATATGATGAAAAG
TTTCCATCAAATCCAAATGCCCATATCTACTTATACAACTTTCTAAAGAGACAGAAGGCACCAAGATCAAAAATGATAAGTGTGCTTAAGATTTTGTATCAGATTGTACCATCTCATAAATTGATGTT
GGAATTCCATACATTACTTAGAAAATCAGAAAAAGAAGAACACCGTAAACTGGGATTGGAGGTATTATTTGGAGTCTTAGATTTTGCCGGATGCACTAAGAATATAACTGCTTGGAAATACTTGGCAA
AATATCTGAAAAAGACCTTAATGGGAAACCACCTTGCGTGGGTTCAAGATGAGTGGAACTCCAGGAAAAACTGGTGGCCAAACTTTCATTTCAGCTACTTTTGGGCAAAAAGTGATTGGAAGGAAGAT
ACAGCTTTGGCCTGTGAGAAAGCTTTTGTGGCTGGATTACTGTTAGGAAAAGGTTGTAGATATTTTCGGTATATTTTAAAGCAAGATCACCAAATCTTAGGGAAGAAAATTAAGCGGATGAAGAGATC
TGTGAAAAAATACAGTATTGTAAATCCAAGACTCTCATACTGAATTTTAGTTATTTCACAGTAGTAGCTACACAGTAAGTAGCTCAGTAGATAGTTATTGAATGTGTTTATGTAGTTATGTGTTATGT
ATTAAGAAGCTTATATTACTACAAAAAACTTATTTTTATATATTTTTATATTTTTGTATTATTTATAGCTAGAGAAACAGTATTACTGCCTTTGCTCTTTGTAACTTTGTCTGTTTTCTTTTTTGTAA
TGTTAAATGTTACATTTGTTAAAGAATAATTCTTCAAATGACAAAATATTAGAGAATATAGTTCTACAGCAGTTATTGTTTGCAAATTCTTTGCCTCTGGCTATTGTGTAATAAATGATAACTTGTGG
TGCTGTGA

hide sequence

RefSeq Acc Id:

XM_007988380 ⟹ XP_007986571

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	6,984,109 - 7,014,699 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	7,222,735 - 7,253,346 (+)	NCBI

Sequence:

show sequence

CAGATGATGAAGTGGAAACATCTGTGCTGACTGGGGCAGGAATGCATTTTCCTTGGCTTCAAAC
ATACGTAGAAACTGTGGTATTTCTGCTTTGACAGATTATTTGGAAGCTTGGAAGTGAAATTCTATTTTATCATCCCAAAAGCAACATGGAGACTTTCAATACTTTTGCTGACCGGATGAAAAATATTG
GCGTCATGAATTATTTAAAGATCTCCTTACAACATGCATTATACCTTCTGCATCATGGAATGCTTAAAGATGCTAAGAGAAATCTGAGTGAGGCAGAGACATGGAGACATGGTGAAAACACGTCTTCC
CGGGGAATATTAATCAACCTTATTCAGGCCTATAAAGGGCTTTTACAGTATTACACCTGGTCTAAAAAGAAGATGGAATTGTCAAAGCTTGATAAGGATGATTATGCTTACAACGCAGTAGCCCAGGA
TGTGTTCAACCACAGCTGGAAGACATCTGCAAATATTTCTGCATTGATTAAAATTCCTGGAGTTTGGGACCCTTTTGTGAAGAGTTATGTAGAAATGCTGGAATTCTATGGGGATCGAGATGGAGCCC
AAGAGGTACTCACTAATTATGCATATGATGAAAAGTTTCCATCAAATCCAAATGCCCATATCTACTTATACAACTTTCTAAAGAGACAGAAGGCACCAAGATCAAAAATGATAAGTGTGCTTAAGATT
TTGTATCAGATTGTACCATCTCATAAATTGATGTTGGAATTCCATACATTACTTAGAAAATCAGAAAAAGAAGAACACCGTAAACTGGGATTGGAGGTATTATTTGGAGTCTTAGATTTTGCCGGATG
CACTAAGAATATAACTGCTTGGAAATACTTGGCAAAATATCTGAAAAAGACCTTAATGGGAAACCACCTTGCGTGGGTTCAAGATGAGTGGAACTCCAGGAAAAACTGGTGGCCAAACTTTCATTTCA
GCTACTTTTGGGCAAAAAGTGATTGGAAGGAAGATACAGCTTTGGCCTGTGAGAAAGCTTTTGTGGCTGGATTACTGTTAGGAAAAGGTTGTAGATATTTTCGGTATATTTTAAAGCAAGATCACCAA
ATCTTAGGGAAGAAAATTAAGCGGATGAAGAGATCTGTGAAAAAATACAGTATTGTAAATCCAAGACTCTCATACTGAATTTTAGTTATTTCACAGTAGTAGCTACACAGTAAGTAGCTCAGTAGATA
GTTATTGAATGTGTTTATGTAGTTATGTGTTATGTATTAAGAAGCTTATATTACTACAAAAAACTTATTTTTATATATTTTTATATTTTTGTATTATTTATAGCTAGAGAAACAGTATTACTGCCTTT
GCTCTTTGTAACTTTGTCTGTTTTCTTTTTTGTAATGTTAAATGTTACATTTGTTAAAGAATAATTCTTCAAATGACAAAATATTAGAGAATATAGTTCTACAGCAGTTATTGTTTGCAAATTCTTTG
CCTCTGGCTATTGTGTAATAAATGATAACTTGTGGTGCTGTGATGT

hide sequence

RefSeq Acc Id:

XM_037985545 ⟹ XP_037841473

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	7,221,358 - 7,253,346 (+)	NCBI


Protein RefSeqs	XP_007986565	(Get FASTA)	NCBI Sequence Viewer
	XP_007986566	(Get FASTA)	NCBI Sequence Viewer
	XP_007986567	(Get FASTA)	NCBI Sequence Viewer
	XP_007986569	(Get FASTA)	NCBI Sequence Viewer
	XP_007986571	(Get FASTA)	NCBI Sequence Viewer
	XP_072867606	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000011963
	ENSCSAP00000011963.1

RefSeq Acc Id:	XP_007986565 ⟸ XM_007988374
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RTM4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007986569 ⟸ XM_007988378
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_007986567 ⟸ XM_007988376
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_007986566 ⟸ XM_007988375
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RTM4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007986571 ⟸ XM_007988380
- Peptide Label:	isoform X3

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000015887	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000013982.1	UniProtKB/TrEMBL
InterPro	RNA_pol_I_TAF1A/TAFI48	UniProtKB/TrEMBL
	SL1/TIF-IB_Component	UniProtKB/TrEMBL
	TAF1A-like	UniProtKB/TrEMBL
KEGG Report	csab:103230042	UniProtKB/TrEMBL
NCBI Gene	TAF1A	ENTREZGENE
PANTHER	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A	UniProtKB/TrEMBL
	TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A	UniProtKB/TrEMBL
Pfam	TAF1_subA	UniProtKB/TrEMBL
PIRSF	TAFI48	UniProtKB/TrEMBL
UniProt	A0A0D9RTM4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

RGD Manual Annotations