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Gene: TAF1A (TATA-box binding protein associated factor, RNA polymerase I subunit A) Chlorocebus sabaeus

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Symbol:

TAF1A

Name:

TATA-box binding protein associated factor, RNA polymerase I subunit A

RGD ID:

18720238

Description:

ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN transcription by RNA polymerase I (inferred); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH dilated cardiomyopathy (ortholog); familial restrictive cardiomyopathy 6 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN microtubule cytoskeleton (inferred); nucleolus (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

TATA box-binding protein-associated factor RNA polymerase I subunit A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	6,982,714 - 7,014,699 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	6,982,784 - 7,014,877 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	7,221,347 - 7,253,346 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dilated cardiomyopathy (ISO)

familial restrictive cardiomyopathy 6 (ISO)

gastrointestinal stromal tumor (ISO)

Loeys-Dietz syndrome 4 (ISO)

parathyroid carcinoma (ISO)

Usher syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

transcription by RNA polymerase I (IEA)

Cellular Component

microtubule cytoskeleton (IEA)

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA)

RNA polymerase I transcription regulator complex (IEA)

RNA polymerase transcription factor SL1 complex (IEA)

Molecular Function

DNA binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase I transcription pathway (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

TAF1A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	6,982,714 - 7,014,699 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	6,982,784 - 7,014,877 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	7,221,347 - 7,253,346 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TAF1A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	222,554,105 - 222,589,933 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	222,557,902 - 222,589,933 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	222,731,244 - 222,763,275 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	220,798,288 - 220,829,878 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	195,950,756 - 195,982,347 (-)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI
HuRef	1	193,405,361 - 193,437,394 (-)	NCBI		HuRef
CHM1_1	1	224,003,859 - 224,035,892 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	221,788,155 - 221,823,679 (-)	NCBI		T2T-CHM13v2.0

Taf1a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	183,170,251 - 183,195,776 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	183,170,325 - 183,191,020 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	183,388,885 - 183,410,201 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	183,388,981 - 183,410,198 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	1	190,389,770 - 190,410,706 (+)	NCBI		Celera
Cytogenetic Map	1	H5	NCBI

Taf1a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	97,543,772 - 97,579,742 (+)	NCBI		GRCr8
mRatBN7.2	13	95,012,160 - 95,048,131 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	95,029,225 - 95,048,087 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	97,517,521 - 97,552,491 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	98,917,328 - 98,952,276 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	96,099,474 - 96,134,437 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	101,770,278 - 101,807,975 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	101,790,865 - 101,806,900 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	100,975,811 - 101,010,982 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	99,475,709 - 99,484,662 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	99,528,622 - 99,673,546 (+)	NCBI
Celera	13	94,538,515 - 94,573,430 (+)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

Taf1a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955520	1,901,405 - 1,921,900 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955520	1,900,802 - 1,921,350 (+)	NCBI	ChiLan1.0	ChiLan1.0

TAF1A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	26,730,903 - 26,768,465 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	26,684,291 - 26,720,548 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	198,227,332 - 198,263,133 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	203,244,796 - 203,276,849 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	203,244,796 - 203,276,872 (-)	Ensembl	panpan1.1		panPan2

TAF1A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	16,827,853 - 16,858,506 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	16,828,205 - 16,858,432 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	16,883,269 - 16,914,352 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	16,873,236 - 16,904,338 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	16,873,247 - 16,904,285 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	16,878,704 - 16,909,772 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	17,228,367 - 17,259,637 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	17,522,309 - 17,553,821 (-)	NCBI		UU_Cfam_GSD_1.0

Taf1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	54,751,797 - 54,756,740 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936650	7 - 6,758 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TAF1A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	11,340,642 - 11,362,432 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	11,340,637 - 11,362,432 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	13,449,697 - 13,471,491 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Taf1a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624835	5,121,299 - 5,144,732 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624835	5,121,496 - 5,144,904 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TAF1A
697 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007988374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007988380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000013982 ⟹ ENSCSAP00000011963

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	25	6,982,784 - 7,014,877 (+)	Ensembl

RefSeq Acc Id:

XM_007988374 ⟹ XP_007986565

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	6,982,714 - 7,014,696 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	7,221,347 - 7,253,346 (+)	NCBI

Sequence:

show sequence

CGGGGTCGAGGCGAGGCCAACAATACGCCTGCTACCGCAGGAGTTACGAGCTGGGCCGCGCGCA
GCCTGAATGCCTAAACCAGGTTTTGCGCATGCTCATATAAAGCTCTCCTAACCCGTCTTCCGGT
GGGAATTTCTTCACGTGGTTCGGAGTCGGAGACTGAGTTTAGCTTTACTGAGGAGCTCTAATTT
TAAGCGGGTATGAGTGATTTCAGTGAAGAATTAAAAGGGCCTGTGACAGATGATGAAGTGGAAA
CATCTGTGCTGACTGGGGCAGGAATGCATTTTCCTTGGCTTCAAACATACGTAGAAACTGTGGC
CATTGGAGGGAAAAGGAAGAAGGATTTTGCTCAGACAACAAGTGCTTGTTTAAGTTTTATCCAA
GAAGCTCTGCTGAAGCACCAATGGCAGCAAGCTGCAGAATACATGTACAGTTATTTTCAGACCT
TGGAAGATTCAGATAGCTACAAAAGGCAGGCTGCACCTGAGATTATTTGGAAGCTTGGAAGTGA
AATTCTATTTTATCATCCCAAAAGCAACATGGAGACTTTCAATACTTTTGCTGACCGGATGAAA
AATATTGGCGTCATGAATTATTTAAAGATCTCCTTACAACATGCATTATACCTTCTGCATCATG
GAATGCTTAAAGATGCTAAGAGAAATCTGAGTGAGGCAGAGACATGGAGACATGGTGAAAACAC
GTCTTCCCGGGGAATATTAATCAACCTTATTCAGGCCTATAAAGGGCTTTTACAGTATTACACC
TGGTCTAAAAAGAAGATGGAATTGTCAAAGCTTGATAAGGATGATTATGCTTACAACGCAGTAG
CCCAGGATGTGTTCAACCACAGCTGGAAGACATCTGCAAATATTTCTGCATTGATTAAAATTCC
TGGAGTTTGGGACCCTTTTGTGAAGAGTTATGTAGAAATGCTGGAATTCTATGGGGATCGAGAT
GGAGCCCAAGAGGTACTCACTAATTATGCATATGATGAAAAGTTTCCATCAAATCCAAATGCCC
ATATCTACTTATACAACTTTCTAAAGAGACAGAAGGCACCAAGATCAAAAATGATAAGTGTGCT
TAAGATTTTGTATCAGATTGTACCATCTCATAAATTGATGTTGGAATTCCATACATTACTTAGA
AAATCAGAAAAAGAAGAACACCGTAAACTGGGATTGGAGGTATTATTTGGAGTCTTAGATTTTG
CCGGATGCACTAAGAATATAACTGCTTGGAAATACTTGGCAAAATATCTGAAAAAGACCTTAAT
GGGAAACCACCTTGCGTGGGTTCAAGATGAGTGGAACTCCAGGAAAAACTGGTGGCCAAACTTT
CATTTCAGCTACTTTTGGGCAAAAAGTGATTGGAAGGAAGATACAGCTTTGGCCTGTGAGAAAG
CTTTTGTGGCTGGATTACTGTTAGGAAAAGGTTGTAGATATTTTCGGTATATTTTAAAGCAAGA
TCACCAAATCTTAGGGAAGAAAATTAAGCGGATGAAGAGATCTGTGAAAAAATACAGTATTGTA
AATCCAAGACTCTCATACTGAATTTTAGTTATTTCACAGTAGTAGCTACACAGTAAGTAGCTCA
GTAGATAGTTATTGAATGTGTTTATGTAGTTATGTGTTATGTATTAAGAAGCTTATATTACTAC
AAAAAACTTATTTTTATATATTTTTATATTTTTGTATTATTTATAGCTAGAGAAACAGTATTAC
TGCCTTTGCTCTTTGTAACTTTGTCTGTTTTCTTTTTTGTAATGTTAAATGTTACATTTGTTAA
AGAATAATTCTTCAAATGACAAAATATTAGAGAATATAGTTCTACAGCAGTTATTGTTTGCAAA
TTCTTTGCCTCTGGCTATTGTGTAATAAATGATAACTTGTGGTGCTGTGA

hide sequence

RefSeq Acc Id:

XM_007988375 ⟹ XP_007986566

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	6,982,825 - 7,014,696 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	7,221,358 - 7,253,346 (+)	NCBI

Sequence:

show sequence

CTAACCCGTCTTCCGGTGGGAATTTCTTCACGTGGTTCGGAGTCGGAGACTGAGTTTAGCTTTA
CTGAGGAGCTCTAATTTTAAGCGGTTTGTAATAGGTATGAGTGATTTCAGTGAAGAATTAAAAG
GGCCTGTGACAGATGATGAAGTGGAAACATCTGTGCTGACTGGGGCAGGAATGCATTTTCCTTG
GCTTCAAACATACGTAGAAACTGTGGCCATTGGAGGGAAAAGGAAGAAGGATTTTGCTCAGACA
ACAAGTGCTTGTTTAAGTTTTATCCAAGAAGCTCTGCTGAAGCACCAATGGCAGCAAGCTGCAG
AATACATGTACAGTTATTTTCAGACCTTGGAAGATTCAGATAGCTACAAAAGGCAGGCTGCACC
TGAGATTATTTGGAAGCTTGGAAGTGAAATTCTATTTTATCATCCCAAAAGCAACATGGAGACT
TTCAATACTTTTGCTGACCGGATGAAAAATATTGGCGTCATGAATTATTTAAAGATCTCCTTAC
AACATGCATTATACCTTCTGCATCATGGAATGCTTAAAGATGCTAAGAGAAATCTGAGTGAGGC
AGAGACATGGAGACATGGTGAAAACACGTCTTCCCGGGGAATATTAATCAACCTTATTCAGGCC
TATAAAGGGCTTTTACAGTATTACACCTGGTCTAAAAAGAAGATGGAATTGTCAAAGCTTGATA
AGGATGATTATGCTTACAACGCAGTAGCCCAGGATGTGTTCAACCACAGCTGGAAGACATCTGC
AAATATTTCTGCATTGATTAAAATTCCTGGAGTTTGGGACCCTTTTGTGAAGAGTTATGTAGAA
ATGCTGGAATTCTATGGGGATCGAGATGGAGCCCAAGAGGTACTCACTAATTATGCATATGATG
AAAAGTTTCCATCAAATCCAAATGCCCATATCTACTTATACAACTTTCTAAAGAGACAGAAGGC
ACCAAGATCAAAAATGATAAGTGTGCTTAAGATTTTGTATCAGATTGTACCATCTCATAAATTG
ATGTTGGAATTCCATACATTACTTAGAAAATCAGAAAAAGAAGAACACCGTAAACTGGGATTGG
AGGTATTATTTGGAGTCTTAGATTTTGCCGGATGCACTAAGAATATAACTGCTTGGAAATACTT
GGCAAAATATCTGAAAAAGACCTTAATGGGAAACCACCTTGCGTGGGTTCAAGATGAGTGGAAC
TCCAGGAAAAACTGGTGGCCAAACTTTCATTTCAGCTACTTTTGGGCAAAAAGTGATTGGAAGG
AAGATACAGCTTTGGCCTGTGAGAAAGCTTTTGTGGCTGGATTACTGTTAGGAAAAGGTTGTAG
ATATTTTCGGTATATTTTAAAGCAAGATCACCAAATCTTAGGGAAGAAAATTAAGCGGATGAAG
AGATCTGTGAAAAAATACAGTATTGTAAATCCAAGACTCTCATACTGAATTTTAGTTATTTCAC
AGTAGTAGCTACACAGTAAGTAGCTCAGTAGATAGTTATTGAATGTGTTTATGTAGTTATGTGT
TATGTATTAAGAAGCTTATATTACTACAAAAAACTTATTTTTATATATTTTTATATTTTTGTAT
TATTTATAGCTAGAGAAACAGTATTACTGCCTTTGCTCTTTGTAACTTTGTCTGTTTTCTTTTT
TGTAATGTTAAATGTTACATTTGTTAAAGAATAATTCTTCAAATGACAAAATATTAGAGAATAT
AGTTCTACAGCAGTTATTGTTTGCAAATTCTTTGCCTCTGGCTATTGTGTAATAAATGATAACT
TGTGGTGCTGTGA

hide sequence

RefSeq Acc Id:

XM_007988376 ⟹ XP_007986567

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	6,982,819 - 7,014,696 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	7,221,377 - 7,253,346 (+)	NCBI

Sequence:

show sequence

GCTCTCCTAACCCGTCTTCCGGTGGGAATTTCTTCACGTGGTTCGGAGTCGGAGACTGAGTTTA
GCTTTACTGAGGAGCTCTAATTTTAAGCGGGTATGAGTGATTTCAGTGAAGAATTAAAAGGGCC
TGTGACAGATGATGAAGTGGAAACATCTGTGCTGACTGGGGCAGGAATGCATTTTCCTTGGCTT
CAAACATACGTAGAAACTGTGGCCATTGGAGGGAAAAGGAAGAAGGATTTTGCTCAGACAACAA
GTGCTTGTTTAAGTTTTATCCAAGAAGCTCTGCTGAAGCACCAATGGCAGCAAGCTGCAGAATA
CATGTACAGTTATTTTCAGACCTTGGAAGATTCAGATAGCTACAAAAGGCAGGCTGCACCTGAG
ATTATTTGGAAGCTTGGAAGTGAAATTCTATTTTATCATCCCAAAAGCAACATGGAGACTTTCA
ATACTTTTGCTGACCGGATGAAAAATATTGGCGTCATGAATTATTTAAAGATCTCCTTACAACA
TGCATTATACCTTCTGCATCATGGAATGCTTAAAGATGCTAAGAGAAATCTGAGTGAGGCAGAG
ACATGGAGACATGGTGAAAACACGTCTTCCCGGGGAATATTAATCAACCTTATTCAGGCCTATA
AAGGGCTTTTACAGTATTACACCTGGTCTAAAAAGAAGATGGAATTGTCAAAGCTTGATAAGGA
TGATTATGCTTACAACGCAGTAGCCCAGGATGTGTTCAACCACAGCTGGAAGACATCTGCAAAT
ATTTCTGCATTGATTAAAATTCCTGGAGTTTGGGACCCTTTTGTGAAGAGTTATGTAGAAATTT
TGTATCAGATTGTACCATCTCATAAATTGATGTTGGAATTCCATACATTACTTAGAAAATCAGA
AAAAGAAGAACACCGTAAACTGGGATTGGAGGTATTATTTGGAGTCTTAGATTTTGCCGGATGC
ACTAAGAATATAACTGCTTGGAAATACTTGGCAAAATATCTGAAAAAGACCTTAATGGGAAACC
ACCTTGCGTGGGTTCAAGATGAGTGGAACTCCAGGAAAAACTGGTGGCCAAACTTTCATTTCAG
CTACTTTTGGGCAAAAAGTGATTGGAAGGAAGATACAGCTTTGGCCTGTGAGAAAGCTTTTGTG
GCTGGATTACTGTTAGGAAAAGGTTGTAGATATTTTCGGTATATTTTAAAGCAAGATCACCAAA
TCTTAGGGAAGAAAATTAAGCGGATGAAGAGATCTGTGAAAAAATACAGTATTGTAAATCCAAG
ACTCTCATACTGAATTTTAGTTATTTCACAGTAGTAGCTACACAGTAAGTAGCTCAGTAGATAG
TTATTGAATGTGTTTATGTAGTTATGTGTTATGTATTAAGAAGCTTATATTACTACAAAAAACT
TATTTTTATATATTTTTATATTTTTGTATTATTTATAGCTAGAGAAACAGTATTACTGCCTTTG
CTCTTTGTAACTTTGTCTGTTTTCTTTTTTGTAATGTTAAATGTTACATTTGTTAAAGAATAAT
TCTTCAAATGACAAAATATTAGAGAATATAGTTCTACAGCAGTTATTGTTTGCAAATTCTTTGC
CTCTGGCTATTGTGTAATAAATGATAACTTGTGGTGCTGTGA

hide sequence

RefSeq Acc Id:

XM_007988378 ⟹ XP_007986569

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	6,982,714 - 7,014,696 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	7,221,347 - 7,253,346 (+)	NCBI

Sequence:

show sequence

CGGGGTCGAGGCGAGGCCAACAATACGCCTGCTACCGCAGGAGTTACGAGCTGGGCCGCGCGCA
GCCTGAATGCCTAAACCAGGTTTTGCGCATGCTCATATAAAGCTCTCCTAACCCGTCTTCCGGT
GGGAATTTCTTCACGTGGTTCGGAGTCGGAGACTGAGTTTAGCTTTACTGAGGAGCTCTAATTT
TAAGCGGGTATGAGTGATTTCAGTGAAGAATTAAAAGGGCCTGTGACAGATGATGAAGTGGAAA
CATCTGTGCTGACTGGGGCAGGAATGCATTTTCCTTGGCTTCAAACATACGTAGAAACTGTGGA
TTATTTGGAAGCTTGGAAGTGAAATTCTATTTTATCATCCCAAAAGCAACATGGAGACTTTCAA
TACTTTTGCTGACCGGATGAAAAATATTGGCGTCATGAATTATTTAAAGATCTCCTTACAACAT
GCATTATACCTTCTGCATCATGGAATGCTTAAAGATGCTAAGAGAAATCTGAGTGAGGCAGAGA
CATGGAGACATGGTGAAAACACGTCTTCCCGGGGAATATTAATCAACCTTATTCAGGCCTATAA
AGGGCTTTTACAGTATTACACCTGGTCTAAAAAGAAGATGGAATTGTCAAAGCTTGATAAGGAT
GATTATGCTTACAACGCAGTAGCCCAGGATGTGTTCAACCACAGCTGGAAGACATCTGCAAATA
TTTCTGCATTGATTAAAATTCCTGGAGTTTGGGACCCTTTTGTGAAGAGTTATGTAGAAATGCT
GGAATTCTATGGGGATCGAGATGGAGCCCAAGAGGTACTCACTAATTATGCATATGATGAAAAG
TTTCCATCAAATCCAAATGCCCATATCTACTTATACAACTTTCTAAAGAGACAGAAGGCACCAA
GATCAAAAATGATAAGTGTGCTTAAGATTTTGTATCAGATTGTACCATCTCATAAATTGATGTT
GGAATTCCATACATTACTTAGAAAATCAGAAAAAGAAGAACACCGTAAACTGGGATTGGAGGTA
TTATTTGGAGTCTTAGATTTTGCCGGATGCACTAAGAATATAACTGCTTGGAAATACTTGGCAA
AATATCTGAAAAAGACCTTAATGGGAAACCACCTTGCGTGGGTTCAAGATGAGTGGAACTCCAG
GAAAAACTGGTGGCCAAACTTTCATTTCAGCTACTTTTGGGCAAAAAGTGATTGGAAGGAAGAT
ACAGCTTTGGCCTGTGAGAAAGCTTTTGTGGCTGGATTACTGTTAGGAAAAGGTTGTAGATATT
TTCGGTATATTTTAAAGCAAGATCACCAAATCTTAGGGAAGAAAATTAAGCGGATGAAGAGATC
TGTGAAAAAATACAGTATTGTAAATCCAAGACTCTCATACTGAATTTTAGTTATTTCACAGTAG
TAGCTACACAGTAAGTAGCTCAGTAGATAGTTATTGAATGTGTTTATGTAGTTATGTGTTATGT
ATTAAGAAGCTTATATTACTACAAAAAACTTATTTTTATATATTTTTATATTTTTGTATTATTT
ATAGCTAGAGAAACAGTATTACTGCCTTTGCTCTTTGTAACTTTGTCTGTTTTCTTTTTTGTAA
TGTTAAATGTTACATTTGTTAAAGAATAATTCTTCAAATGACAAAATATTAGAGAATATAGTTC
TACAGCAGTTATTGTTTGCAAATTCTTTGCCTCTGGCTATTGTGTAATAAATGATAACTTGTGG
TGCTGTGA

hide sequence

RefSeq Acc Id:

XM_007988380 ⟹ XP_007986571

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	6,984,109 - 7,014,699 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	7,222,735 - 7,253,346 (+)	NCBI

Sequence:

show sequence

CAGATGATGAAGTGGAAACATCTGTGCTGACTGGGGCAGGAATGCATTTTCCTTGGCTTCAAAC
ATACGTAGAAACTGTGGTATTTCTGCTTTGACAGATTATTTGGAAGCTTGGAAGTGAAATTCTA
TTTTATCATCCCAAAAGCAACATGGAGACTTTCAATACTTTTGCTGACCGGATGAAAAATATTG
GCGTCATGAATTATTTAAAGATCTCCTTACAACATGCATTATACCTTCTGCATCATGGAATGCT
TAAAGATGCTAAGAGAAATCTGAGTGAGGCAGAGACATGGAGACATGGTGAAAACACGTCTTCC
CGGGGAATATTAATCAACCTTATTCAGGCCTATAAAGGGCTTTTACAGTATTACACCTGGTCTA
AAAAGAAGATGGAATTGTCAAAGCTTGATAAGGATGATTATGCTTACAACGCAGTAGCCCAGGA
TGTGTTCAACCACAGCTGGAAGACATCTGCAAATATTTCTGCATTGATTAAAATTCCTGGAGTT
TGGGACCCTTTTGTGAAGAGTTATGTAGAAATGCTGGAATTCTATGGGGATCGAGATGGAGCCC
AAGAGGTACTCACTAATTATGCATATGATGAAAAGTTTCCATCAAATCCAAATGCCCATATCTA
CTTATACAACTTTCTAAAGAGACAGAAGGCACCAAGATCAAAAATGATAAGTGTGCTTAAGATT
TTGTATCAGATTGTACCATCTCATAAATTGATGTTGGAATTCCATACATTACTTAGAAAATCAG
AAAAAGAAGAACACCGTAAACTGGGATTGGAGGTATTATTTGGAGTCTTAGATTTTGCCGGATG
CACTAAGAATATAACTGCTTGGAAATACTTGGCAAAATATCTGAAAAAGACCTTAATGGGAAAC
CACCTTGCGTGGGTTCAAGATGAGTGGAACTCCAGGAAAAACTGGTGGCCAAACTTTCATTTCA
GCTACTTTTGGGCAAAAAGTGATTGGAAGGAAGATACAGCTTTGGCCTGTGAGAAAGCTTTTGT
GGCTGGATTACTGTTAGGAAAAGGTTGTAGATATTTTCGGTATATTTTAAAGCAAGATCACCAA
ATCTTAGGGAAGAAAATTAAGCGGATGAAGAGATCTGTGAAAAAATACAGTATTGTAAATCCAA
GACTCTCATACTGAATTTTAGTTATTTCACAGTAGTAGCTACACAGTAAGTAGCTCAGTAGATA
GTTATTGAATGTGTTTATGTAGTTATGTGTTATGTATTAAGAAGCTTATATTACTACAAAAAAC
TTATTTTTATATATTTTTATATTTTTGTATTATTTATAGCTAGAGAAACAGTATTACTGCCTTT
GCTCTTTGTAACTTTGTCTGTTTTCTTTTTTGTAATGTTAAATGTTACATTTGTTAAAGAATAA
TTCTTCAAATGACAAAATATTAGAGAATATAGTTCTACAGCAGTTATTGTTTGCAAATTCTTTG
CCTCTGGCTATTGTGTAATAAATGATAACTTGTGGTGCTGTGATGT

hide sequence

RefSeq Acc Id:

XM_037985545 ⟹ XP_037841473

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	7,221,358 - 7,253,346 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007986565	(Get FASTA)	NCBI Sequence Viewer
	XP_007986566	(Get FASTA)	NCBI Sequence Viewer
	XP_007986567	(Get FASTA)	NCBI Sequence Viewer
	XP_007986569	(Get FASTA)	NCBI Sequence Viewer
	XP_007986571	(Get FASTA)	NCBI Sequence Viewer
	XP_037841473	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000011963
	ENSCSAP00000011963.1

RefSeq Acc Id:	XP_007986565 ⟸ XM_007988374
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RTM4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007986569 ⟸ XM_007988378
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_007986567 ⟸ XM_007988376
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_007986566 ⟸ XM_007988375
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RTM4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007986571 ⟸ XM_007988380
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSCSAP00000011963 ⟸ ENSCSAT00000013982

RefSeq Acc Id:	XP_037841473 ⟸ XM_037985545
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000015887	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000013982.1	UniProtKB/TrEMBL
InterPro	RNA_pol_I_TAF1A/TAFI48	UniProtKB/TrEMBL
	SL1/TIF-IB_Component	UniProtKB/TrEMBL
	TAF1A-like	UniProtKB/TrEMBL
KEGG Report	csab:103230042	UniProtKB/TrEMBL
NCBI Gene	TAF1A	ENTREZGENE
PANTHER	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A	UniProtKB/TrEMBL
	TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A	UniProtKB/TrEMBL
Pfam	TAF1_subA	UniProtKB/TrEMBL
PIRSF	TAFI48	UniProtKB/TrEMBL
UniProt	A0A0D9RTM4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

RGD Manual Annotations