Taf1a (TATA-box binding protein associated factor, RNA polymerase I, A) - Rat Genome Database
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Gene: Taf1a (TATA-box binding protein associated factor, RNA polymerase I, A) Mus musculus
Analyze
Symbol: Taf1a
Name: TATA-box binding protein associated factor, RNA polymerase I, A
RGD ID: 1313880
MGI Page MGI
Description: Predicted to have DNA binding activity. Predicted to be involved in transcription by RNA polymerase I. Predicted to localize to microtubule cytoskeleton and nucleoplasm. Orthologous to human TAF1A (TATA-box binding protein associated factor, RNA polymerase I subunit A); PARTICIPATES IN RNA polymerase I transcription pathway; INTERACTS WITH 1,2-dimethylhydrazine; aflatoxin B1; fluoranthene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: mTAFI; mTAFI48; RNA polymerase I-specific TBP-associated factor 48 kDa; TAFI48; TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A; TATA box-binding protein-associated factor 1A; TATA box-binding protein-associated factor RNA polymerase I subunit A; TBP-associated factor 1A; transcription initiation factor SL1/TIF-IB subunit A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,170,225 - 183,195,776 (+)NCBIGRCm39mm39
GRCm381183,388,885 - 183,410,201 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,388,981 - 183,410,198 (+)EnsemblGRCm38mm10GRCm38
Celera1190,389,770 - 190,410,706 (+)NCBICelera
Cytogenetic Map1H5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
DNA binding  (IEA)
protein binding  (IPI,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:9050847   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14691545   PMID:15226435   PMID:15489334  
PMID:16141072   PMID:16141073   PMID:18799693   PMID:20059953   PMID:20211142   PMID:24928901  


Genomics

Comparative Map Data
Taf1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,170,225 - 183,195,776 (+)NCBIGRCm39mm39
GRCm381183,388,885 - 183,410,201 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,388,981 - 183,410,198 (+)EnsemblGRCm38mm10GRCm38
Celera1190,389,770 - 190,410,706 (+)NCBICelera
Cytogenetic Map1H5NCBI
TAF1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1222,557,902 - 222,589,933 (-)EnsemblGRCh38hg38GRCh38
GRCh381222,557,902 - 222,590,096 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371222,730,990 - 222,763,438 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371222,731,244 - 222,763,275 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361220,798,288 - 220,829,878 (-)NCBINCBI36hg18NCBI36
Celera1195,950,756 - 195,982,347 (-)NCBI
Cytogenetic Map1q41NCBI
HuRef1193,405,361 - 193,437,394 (-)NCBIHuRef
CHM1_11224,003,859 - 224,035,892 (-)NCBICHM1_1
Taf1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21395,012,160 - 95,048,131 (+)NCBI
Rnor_6.0 Ensembl13101,790,865 - 101,806,900 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.013101,770,278 - 101,807,975 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013100,975,811 - 101,010,982 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41399,475,709 - 99,484,662 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11399,528,622 - 99,673,546 (+)NCBI
Celera1394,538,515 - 94,573,430 (+)NCBICelera
Cytogenetic Map13q26NCBI
Taf1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555201,901,405 - 1,921,900 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555201,900,802 - 1,921,350 (+)NCBIChiLan1.0ChiLan1.0
TAF1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11203,244,796 - 203,276,849 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1203,244,796 - 203,276,872 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01198,227,332 - 198,263,133 (-)NCBIMhudiblu_PPA_v0panPan3
TAF1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3816,828,205 - 16,858,432 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13816,827,853 - 16,858,506 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
LOC101973086
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366507 - 6,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1011,315,856 - 11,362,414 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11011,340,637 - 11,362,432 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21013,449,697 - 13,471,491 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAF1A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,982,714 - 7,014,699 (+)NCBI
ChlSab1.1 Ensembl256,982,784 - 7,014,877 (+)Ensembl
Taf1a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248355,121,496 - 5,144,904 (-)NCBI

Position Markers
Y09972  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381183,409,945 - 183,410,067UniSTSGRCm38
MGSCv371383,293 - 383,415UniSTSGRCm37
Celera1190,410,450 - 190,410,572UniSTS
Whitehead/MRC_RH12286.99UniSTS
UniSTS:234294  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381183,394,751 - 183,394,950UniSTSGRCm38
MGSCv371368,099 - 368,298UniSTSGRCm37
Celera1190,395,778 - 190,395,977UniSTS
UniSTS:234295  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381183,406,015 - 183,406,354UniSTSGRCm38
MGSCv371379,363 - 379,702UniSTSGRCm37
Celera1190,406,892 - 190,407,231UniSTS
RH138784  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381183,395,912 - 183,396,053UniSTSGRCm38
MGSCv371369,260 - 369,401UniSTSGRCm37
Celera1190,396,940 - 190,397,081UniSTS
AU015232  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381183,394,793 - 183,395,041UniSTSGRCm38
MGSCv371368,141 - 368,389UniSTSGRCm37
Celera1190,395,820 - 190,396,068UniSTS
Whitehead/MRC_RH12285.93UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172571254195471971Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157628733191628870Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155893961189895041Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156774467189571420Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157628733191628870Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162317638194429220Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157628733191628870Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152211172186211344Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167730317195471971Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167730317195471971Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1168222387195471971Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175529010195471971Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159435007193435127Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158641251192641372Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164315658190802075Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155888654189888802Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150317922188627115Mouse
1357620Aaj1_manxiety in A/J 1 (mouse)Not determined1181004752192168463Mouse
1357692Axtq1_manxiety QTL 1 (mouse)Not determined1181004752192168463Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167730317195471971Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1156004198190004325Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171804480192998742Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157628733191628870Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157628733191628870Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150317922188627115Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152211172186211344Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1172250913195471971Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152211172186211344Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155699229189699330Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157628733191628870Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150929168184929353Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167929168189571420Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1166092111195471971Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158641251192641372Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157628733191628870Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168481626195471971Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1156004198190004325Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170647303195471971Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156774467189571420Mouse
1301164Tir3c_mtrypansomiasis infection response 3c (mouse)Not determined1154804480188804689Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147249520189251027Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined156004198190004325Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152211172186211344Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1163149528186261999Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160285202194285317Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151358674185358833Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155888654189888802Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161373696195373830Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150317922188627115Mouse
4142119Bpq21_mblood pressure QTL 21 (mouse)Not determined1152211172186211344Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined152007542186007711Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155706491186261999Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152211172186211344Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171804480189571420Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172571254195471971Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154582944188582944Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158641251192641372Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153848421187848536Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153885284187885284Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152919071186706423Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155698056189699966Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1104005680191493284Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167758517191493284Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172571254195471971Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158641251192641372Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152305175186305175Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158641251192641372Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155888654189888802Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155175373189175373Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172800000195471971Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175641251194429220Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155175373189175373Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172900000195471971Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160269591194269591Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155175373189175373Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158641251192641372Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160269591194269591Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152305175186305175Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1156004198190004325Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:109
Interacting mature miRNAs:116
Transcripts:ENSMUST00000097043
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001277957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001277958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001277959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEKQ02108034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN707961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02002843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y09972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000097043   ⟹   ENSMUSP00000094808
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1183,388,981 - 183,409,353 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192076   ⟹   ENSMUSP00000142213
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1183,388,985 - 183,406,638 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195798   ⟹   ENSMUSP00000141334
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1183,408,609 - 183,410,198 (+)Ensembl
RefSeq Acc Id: NM_001277957   ⟹   NP_001264886
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,170,225 - 183,191,020 (+)NCBI
GRCm381183,388,885 - 183,410,201 (+)NCBI
Celera1190,389,770 - 190,410,706 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001277958   ⟹   NP_001264887
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,170,325 - 183,191,020 (+)NCBI
GRCm381183,388,985 - 183,410,201 (+)NCBI
Celera1190,389,770 - 190,410,706 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001277959   ⟹   NP_001264888
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,170,325 - 183,191,020 (+)NCBI
GRCm381183,388,985 - 183,410,201 (+)NCBI
Celera1190,389,770 - 190,410,706 (+)NCBI
Sequence:
RefSeq Acc Id: NM_021466   ⟹   NP_067441
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,170,225 - 183,191,020 (+)NCBI
GRCm381183,388,885 - 183,410,201 (+)ENTREZGENE
Celera1190,389,770 - 190,410,706 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036163393   ⟹   XP_036019286
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,170,251 - 183,191,020 (+)NCBI
RefSeq Acc Id: XR_004941413
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,170,251 - 183,195,776 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_067441   ⟸   NM_021466
- Peptide Label: isoform 1
- UniProtKB: P97357 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001264886   ⟸   NM_001277957
- Peptide Label: isoform 2
- UniProtKB: P97357 (UniProtKB/Swiss-Prot),   B9EHT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001264887   ⟸   NM_001277958
- Peptide Label: isoform 3
- UniProtKB: P97357 (UniProtKB/Swiss-Prot),   Q3V054 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001264888   ⟸   NM_001277959
- Peptide Label: isoform 1
- UniProtKB: P97357 (UniProtKB/Swiss-Prot),   Q3V054 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000142213   ⟸   ENSMUST00000192076
RefSeq Acc Id: ENSMUSP00000094808   ⟸   ENSMUST00000097043
RefSeq Acc Id: ENSMUSP00000141334   ⟸   ENSMUST00000195798
RefSeq Acc Id: XP_036019286   ⟸   XM_036163393
- Peptide Label: isoform X1

Promoters
RGD ID:6876000
Promoter ID:EPDNEW_M1451
Type:multiple initiation site
Name:Taf1a_1
Description:Mus musculus TATA-box binding protein associated factor, RNApolymerase I, A , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381183,388,985 - 183,389,045EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109578 AgrOrtholog
Ensembl Genes ENSMUSG00000072258 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000094808 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000141334 UniProtKB/TrEMBL
  ENSMUSP00000142213 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000097043 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000192076 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000195798 UniProtKB/TrEMBL
InterPro RNA_pol_I_TAF1A/TAFI48 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TAF1A-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109578 ENTREZGENE
NCBI Gene 21339 ENTREZGENE
Pfam TAF1_subA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Taf1a PhenoGen
PIRSF TAFI48 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YW00_MOUSE UniProtKB/TrEMBL
  A0A0A6YXZ8_MOUSE UniProtKB/TrEMBL
  B9EHT7 ENTREZGENE, UniProtKB/TrEMBL
  J3KMG9_MOUSE UniProtKB/TrEMBL
  P97357 ENTREZGENE
  Q3V054 ENTREZGENE, UniProtKB/TrEMBL
  TAF1A_MOUSE UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Taf1a  TATA-box binding protein associated factor, RNA polymerase I, A    TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A  Symbol and/or name change 5135510 APPROVED