SYNCRIP (synaptotagmin binding cytoplasmic RNA interacting protein) - Rat Genome Database

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Pathways
Gene: SYNCRIP (synaptotagmin binding cytoplasmic RNA interacting protein) Chlorocebus sabaeus
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Symbol: SYNCRIP
Name: synaptotagmin binding cytoplasmic RNA interacting protein
RGD ID: 18676056
Description: ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); poly(A) binding (ortholog); INVOLVED IN circadian rhythm (ortholog); mRNA modification (ortholog); negative regulation of mRNA modification (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN glutamatergic synapse (ortholog); histone pre-mRNA 3'end processing complex (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heterogeneous nuclear ribonucleoprotein Q; LOC103240044
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11390,212,565 - 90,245,122 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023666040186,465,592 - 186,501,124 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11310,280,627 - 10,316,690 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1310,285,130 - 10,316,197 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
JBrowse:




Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SYNCRIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11390,212,565 - 90,245,122 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023666040186,465,592 - 186,501,124 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11310,280,627 - 10,316,690 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1310,285,130 - 10,316,197 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
SYNCRIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38685,607,784 - 85,643,870 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl685,607,390 - 85,644,063 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh37686,317,502 - 86,352,604 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36686,380,658 - 86,409,746 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34686,380,657 - 86,409,746NCBI
Celera686,744,699 - 86,780,252 (-)NCBICelera
Cytogenetic Map6q14.3NCBI
HuRef683,541,795 - 83,577,379 (-)NCBIHuRef
CHM1_1686,415,395 - 86,450,935 (-)NCBICHM1_1
T2T-CHM13v2.0686,824,588 - 86,863,388 (-)NCBIT2T-CHM13v2.0
Syncrip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39988,331,417 - 88,364,645 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl988,329,062 - 88,364,653 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38988,449,364 - 88,482,591 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl988,447,009 - 88,482,574 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37988,344,576 - 88,377,235 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36988,250,166 - 88,280,101 (-)NCBIMGSCv36mm8
Celera985,476,156 - 85,508,831 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map947.24NCBI
Syncrip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8898,282,358 - 98,315,412 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl898,282,358 - 98,315,386 (-)EnsemblGRCr8
mRatBN7.2889,402,487 - 89,435,517 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl889,402,866 - 89,435,515 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx895,072,072 - 95,104,990 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0893,271,285 - 93,304,203 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0891,130,505 - 91,163,359 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd899,205,102 - 99,238,223 (-)NCBI
Lyon_Normotensive8101,315,866 - 101,348,718 (-)NCBI
Lyon_Hypertensive899,805,120 - 99,837,972 (-)NCBI
F344_StmMcwi891,271,160 - 91,304,012 (-)NCBI
Rnor_6.0896,100,692 - 96,266,342 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl896,105,025 - 96,266,342 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0895,596,235 - 95,761,885 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4893,730,131 - 93,820,288 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera888,978,968 - 89,067,272 (-)NCBICelera
RGSC_v3.1893,749,587 - 93,774,982 (-)NCBI
Cytogenetic Map8q31NCBI
Syncrip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541113,066,789 - 13,096,938 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495541113,068,078 - 13,096,936 (-)NCBIChiLan1.0ChiLan1.0
SYNCRIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25105,696,353 - 105,731,828 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16103,590,900 - 103,626,474 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0683,491,803 - 83,527,256 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1686,773,004 - 86,807,623 (-)NCBIPanPan1.1PanPan1.1panPan2
SYNCRIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11245,613,947 - 45,644,879 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1245,618,234 - 45,644,778 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1245,428,679 - 45,459,645 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01246,383,444 - 46,414,620 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1246,384,906 - 46,414,545 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11245,716,529 - 45,747,482 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01245,645,705 - 45,676,715 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01245,832,814 - 45,863,783 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Syncrip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap1874,317,101 - 74,343,931 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440494680,798,612 - 80,827,841 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365105,643,044 - 5,672,255 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365105,643,072 - 5,672,258 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNCRIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl154,563,114 - 54,598,407 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1154,563,112 - 54,598,408 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2160,993,506 - 61,026,452 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Syncrip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247998,616,787 - 8,657,466 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247998,616,808 - 8,652,923 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl

Variants

.
Variants in SYNCRIP
495 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000015458   ⟹   ENSCSAP00000013398
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1310,285,130 - 10,316,197 (-)Ensembl
RefSeq Acc Id: XM_008006519   ⟹   XP_008004710
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
mChlSab1.0.hap11390,213,421 - 90,242,176 (+)NCBI
Vero_WHO_p1.0NW_023666040186,471,366 - 186,500,571 (-)NCBI
ChlSab1.11310,286,402 - 10,316,167 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008006520   ⟹   XP_008004711
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
mChlSab1.0.hap11390,213,443 - 90,245,122 (+)NCBI
Vero_WHO_p1.0NW_023666040186,465,778 - 186,500,389 (-)NCBI
ChlSab1.11310,280,627 - 10,315,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008006521   ⟹   XP_008004712
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
mChlSab1.0.hap11390,213,443 - 90,245,122 (+)NCBI
Vero_WHO_p1.0NW_023666040186,465,778 - 186,500,389 (-)NCBI
ChlSab1.11310,280,627 - 10,315,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008006522   ⟹   XP_008004713
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
mChlSab1.0.hap11390,212,565 - 90,242,176 (+)NCBI
Vero_WHO_p1.0NW_023666040186,471,366 - 186,501,124 (-)NCBI
ChlSab1.11310,286,402 - 10,316,690 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008006523   ⟹   XP_008004714
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
mChlSab1.0.hap11390,213,444 - 90,245,122 (+)NCBI
Vero_WHO_p1.0NW_023666040186,465,594 - 186,500,246 (-)NCBI
ChlSab1.11310,280,627 - 10,316,167 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008006524   ⟹   XP_008004715
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
mChlSab1.0.hap11390,213,444 - 90,245,122 (+)NCBI
Vero_WHO_p1.0NW_023666040186,466,978 - 186,500,389 (-)NCBI
ChlSab1.11310,280,627 - 10,315,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008006525   ⟹   XP_008004716
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
mChlSab1.0.hap11390,213,474 - 90,245,122 (+)NCBI
Vero_WHO_p1.0NW_023666040186,465,592 - 186,500,173 (-)NCBI
ChlSab1.11310,280,627 - 10,315,768 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008006526   ⟹   XP_008004717
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
mChlSab1.0.hap11390,213,443 - 90,242,176 (+)NCBI
Vero_WHO_p1.0NW_023666040186,471,366 - 186,500,383 (-)NCBI
ChlSab1.11310,286,402 - 10,315,757 (-)NCBI
Sequence:
RefSeq Acc Id: XP_008004714   ⟸   XM_008006523
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RXQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008004716   ⟸   XM_008006525
- Peptide Label: isoform X7
RefSeq Acc Id: XP_008004715   ⟸   XM_008006524
- Peptide Label: isoform X5
RefSeq Acc Id: XP_008004712   ⟸   XM_008006521
- Peptide Label: isoform X3
RefSeq Acc Id: XP_008004711   ⟸   XM_008006520
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008004713   ⟸   XM_008006522
- Peptide Label: isoform X1
RefSeq Acc Id: XP_008004710   ⟸   XM_008006519
- Peptide Label: isoform X1
RefSeq Acc Id: XP_008004717   ⟸   XM_008006526
- Peptide Label: isoform X6
Ensembl Acc Id: ENSCSAP00000013398   ⟸   ENSCSAT00000015458


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017365 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015458.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro hnRNP_Q_AcD UniProtKB/TrEMBL
  HnRNP_R/Q_splicing_fac UniProtKB/TrEMBL
  hnRNPQ_RRM1 UniProtKB/TrEMBL
  hnRNPQ_RRM2 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene SYNCRIP ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN UniProtKB/TrEMBL
Pfam hnRNP_Q_AcD UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0D9RXQ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 SYNCRIP  synaptotagmin binding cytoplasmic RNA interacting protein  LOC103240044  synaptotagmin binding cytoplasmic RNA interacting protein  Symbol and/or name change 5135510 APPROVED
2020-12-08 LOC103240044  synaptotagmin binding cytoplasmic RNA interacting protein  SYNCRIP  synaptotagmin binding cytoplasmic RNA interacting protein  Symbol and/or name change 5135510 APPROVED