SYNCRIP (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
mChlSab1.0.hap1 | 13 | 90,212,565 - 90,245,122 (+) | NCBI | | mChlSab1.0.hap1 | | | Vero_WHO_p1.0 | NW_023666040 | 186,465,592 - 186,501,124 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | | ChlSab1.1 | 13 | 10,280,627 - 10,316,690 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 13 | 10,285,130 - 10,316,197 (-) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM |
|
SYNCRIP (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 6 | 85,607,784 - 85,643,870 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 6 | 85,607,390 - 85,644,063 (-) | Ensembl | | GRCh38.p14 Ensembl | hg38 | GRCh38 | GRCh37 | 6 | 86,317,502 - 86,352,604 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 6 | 86,380,658 - 86,409,746 (-) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | 6 | 86,380,657 - 86,409,746 | NCBI | | | | | Celera | 6 | 86,744,699 - 86,780,252 (-) | NCBI | | Celera | | | Cytogenetic Map | 6 | q14.3 | NCBI | | | | | HuRef | 6 | 83,541,795 - 83,577,379 (-) | NCBI | | HuRef | | | CHM1_1 | 6 | 86,415,395 - 86,450,935 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 6 | 86,824,588 - 86,863,388 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Syncrip (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 9 | 88,331,417 - 88,364,645 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 9 | 88,329,062 - 88,364,653 (-) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 9 | 88,449,364 - 88,482,591 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 9 | 88,447,009 - 88,482,574 (-) | Ensembl | | GRCm38.p6 Ensembl | mm10 | GRCm38 | MGSCv37 | 9 | 88,344,576 - 88,377,235 (-) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 9 | 88,250,166 - 88,280,101 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 9 | 85,476,156 - 85,508,831 (-) | NCBI | | Celera | | | Cytogenetic Map | 9 | E3.1 | NCBI | | | | | cM Map | 9 | 47.24 | NCBI | | | | |
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Syncrip (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 8 | 98,282,358 - 98,315,412 (-) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 8 | 98,282,358 - 98,315,386 (-) | Ensembl | | | | GRCr8 | mRatBN7.2 | 8 | 89,402,487 - 89,435,517 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 8 | 89,402,866 - 89,435,515 (-) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 8 | 95,072,072 - 95,104,990 (-) | NCBI | UTH_Rnor_SHR_Utx | | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 8 | 93,271,285 - 93,304,203 (-) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | | UTH_Rnor_WKY_Bbb_1.0 | 8 | 91,130,505 - 91,163,359 (-) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | | | | Dahl_SR_JrHsd | 8 | 99,205,102 - 99,238,223 (-) | NCBI | | | | | Lyon_Normotensive | 8 | 101,315,866 - 101,348,718 (-) | NCBI | | | | | Lyon_Hypertensive | 8 | 99,805,120 - 99,837,972 (-) | NCBI | | | | | F344_StmMcwi | 8 | 91,271,160 - 91,304,012 (-) | NCBI | | | | | Rnor_6.0 | 8 | 96,100,692 - 96,266,342 (-) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 8 | 96,105,025 - 96,266,342 (-) | Ensembl | | Rnor_6.0 Ensembl | rn6 | Rnor6.0 | Rnor_5.0 | 8 | 95,596,235 - 95,761,885 (-) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 8 | 93,730,131 - 93,820,288 (-) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 8 | 88,978,968 - 89,067,272 (-) | NCBI | | Celera | | | RGSC_v3.1 | 8 | 93,749,587 - 93,774,982 (-) | NCBI | | | | | Cytogenetic Map | 8 | q31 | NCBI | | | | |
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Syncrip (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955411 | 13,066,789 - 13,096,938 (-) | Ensembl | | ChiLan1.0 Ensembl | | | ChiLan1.0 | NW_004955411 | 13,068,078 - 13,096,936 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SYNCRIP (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 5 | 105,696,353 - 105,731,828 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 6 | 103,590,900 - 103,626,474 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 6 | 83,491,803 - 83,527,256 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 6 | 86,773,004 - 86,807,623 (-) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | |
|
SYNCRIP (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 12 | 45,613,947 - 45,644,879 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 12 | 45,618,234 - 45,644,778 (-) | Ensembl | | CanFam3.1 Ensembl | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 12 | 45,428,679 - 45,459,645 (-) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 12 | 46,383,444 - 46,414,620 (-) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 12 | 46,384,906 - 46,414,545 (-) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 12 | 45,716,529 - 45,747,482 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 12 | 45,645,705 - 45,676,715 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 12 | 45,832,814 - 45,863,783 (-) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
|
Syncrip (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
mIctTri1.hap1 | 8 | 74,317,101 - 74,343,931 (+) | NCBI | | mIctTri1.hap1 | | | HiC_Itri_2 | NW_024404946 | 80,798,612 - 80,827,841 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936510 | 5,643,044 - 5,672,255 (+) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936510 | 5,643,072 - 5,672,258 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
SYNCRIP (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 1 | 54,563,114 - 54,598,407 (-) | Ensembl | | Sscrofa11.1 Ensembl | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 1 | 54,563,112 - 54,598,408 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 1 | 60,993,506 - 61,026,452 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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Syncrip (Heterocephalus glaber - naked mole-rat) |
|