Syncrip (synaptotagmin binding, cytoplasmic RNA interacting protein) - Rat Genome Database
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Gene: Syncrip (synaptotagmin binding, cytoplasmic RNA interacting protein) Mus musculus
Analyze
Symbol: Syncrip
Name: synaptotagmin binding, cytoplasmic RNA interacting protein
RGD ID: 1557624
MGI Page MGI
Description: Exhibits poly(A) binding activity. Predicted to be involved in CRD-mediated mRNA stabilization; cellular response to interferon-gamma; and negative regulation of translation. Localizes to cytoplasm and histone pre-mRNA 3'end processing complex. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Orthologous to human SYNCRIP (synaptotagmin binding cytoplasmic RNA interacting protein); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2610109K23Rik; 4632417O19Rik; glycine- and tyrosine-rich RNA-binding protein; GRY-; GRY-RBP; heterogeneous nuclear ribonucleoprotein Q; hnRNP Q; hnRNP-Q; N; NS1-associated protein 1; NS1-associated protein 1-like; Nsap1; Nsap1l; pp; pp68; RRM RNA binding protein GRY-RBP; synaptotagmin-binding, cytoplasmic RNA-interacting protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm19142   Gm19144   Gm5317   Gm6501  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39988,331,417 - 88,364,645 (-)NCBIGRCm39mm39
GRCm38988,449,364 - 88,482,591 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl988,447,009 - 88,482,574 (-)EnsemblGRCm38mm10GRCm38
MGSCv37988,344,576 - 88,377,235 (-)NCBIGRCm37mm9NCBIm37
MGSCv36988,250,166 - 88,280,101 (-)NCBImm8
Celera985,476,156 - 85,508,831 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (EXP)
casticin  (EXP)
chloropicrin  (ISO)
choline  (EXP)
chromium(6+)  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
gemcitabine  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
kojic acid  (ISO)
L-methionine  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
oxaliplatin  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (EXP)
piroxicam  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (EXP)
staurosporine  (ISO)
succimer  (EXP)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thimerosal  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
troglitazone  (EXP)
trovafloxacin  (EXP)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:9847309   PMID:10349636   PMID:10512203   PMID:10734137   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11773003   PMID:11994298   PMID:12466305   PMID:12477932  
PMID:12520002   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15340051   PMID:15489334   PMID:15840001   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16236758   PMID:16870172  
PMID:18495661   PMID:18799693   PMID:19470752   PMID:21267068   PMID:21785138   PMID:21873635   PMID:22124155   PMID:22357624   PMID:22493061   PMID:22935615   PMID:23071094   PMID:23086144  
PMID:23665500   PMID:23700384   PMID:24457600   PMID:24844655   PMID:26265008   PMID:26336360   PMID:26658614   PMID:27160897   PMID:27392095   PMID:27732855   PMID:28378742   PMID:28436985  
PMID:29055695   PMID:29518331   PMID:29530978   PMID:30068389   PMID:30457570   PMID:30478144   PMID:30488434   PMID:30595499   PMID:30948510   PMID:31040226   PMID:31138677   PMID:31189591  
PMID:32098917   PMID:32325033   PMID:32968282  


Genomics

Comparative Map Data
Syncrip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39988,331,417 - 88,364,645 (-)NCBIGRCm39mm39
GRCm38988,449,364 - 88,482,591 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl988,447,009 - 88,482,574 (-)EnsemblGRCm38mm10GRCm38
MGSCv37988,344,576 - 88,377,235 (-)NCBIGRCm37mm9NCBIm37
MGSCv36988,250,166 - 88,280,101 (-)NCBImm8
Celera985,476,156 - 85,508,831 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
SYNCRIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl685,607,785 - 85,643,792 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl685,607,779 - 85,644,063 (-)EnsemblGRCh38hg38GRCh38
GRCh38685,607,784 - 85,643,862 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37686,317,502 - 86,353,568 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36686,380,658 - 86,409,746 (-)NCBINCBI36hg18NCBI36
Build 34686,380,657 - 86,409,746NCBI
Celera686,744,699 - 86,780,252 (-)NCBI
Cytogenetic Map6q14.3NCBI
HuRef683,541,795 - 83,577,379 (-)NCBIHuRef
CHM1_1686,415,395 - 86,450,935 (-)NCBICHM1_1
Syncrip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0896,100,692 - 96,266,342 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl896,105,025 - 96,266,342 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0895,596,235 - 95,761,885 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4893,730,131 - 93,820,288 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1893,749,587 - 93,774,982 (-)NCBI
Celera888,978,968 - 89,067,272 (-)NCBICelera
Cytogenetic Map8q31NCBI
Syncrip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541113,066,789 - 13,096,938 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541113,068,078 - 13,096,936 (-)NCBIChiLan1.0ChiLan1.0
SYNCRIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1686,773,004 - 86,807,623 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0683,491,803 - 83,527,256 (-)NCBIMhudiblu_PPA_v0panPan3
SYNCRIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1245,618,234 - 45,644,778 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11245,613,947 - 45,644,879 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Syncrip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365105,643,072 - 5,672,258 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNCRIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl154,563,113 - 54,598,407 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1154,563,112 - 54,598,408 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2160,993,506 - 61,026,452 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103240044
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11310,280,627 - 10,316,690 (-)NCBI
ChlSab1.1 Ensembl1310,285,130 - 10,316,197 (-)Ensembl
Syncrip
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247998,616,787 - 8,657,466 (+)NCBI

Position Markers
Syncrip  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9E3.2UniSTS
cM Map9 UniSTS
UniSTS:236218  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813103,922,380 - 103,923,708UniSTSGRCm38
GRCm38988,450,200 - 88,450,372UniSTSGRCm38
MGSCv37988,345,038 - 88,345,210UniSTSGRCm37
MGSCv3713104,712,460 - 104,713,788UniSTSGRCm37
Celera985,476,618 - 85,476,790UniSTS
Celera13108,323,216 - 108,324,544UniSTS
Cytogenetic Map9E3.2UniSTS
RH126833  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38988,459,142 - 88,459,350UniSTSGRCm38
MGSCv37988,353,980 - 88,354,188UniSTSGRCm37
Celera985,485,547 - 85,485,755UniSTS
Cytogenetic Map9E3.2UniSTS
cM Map950.0UniSTS
Whitehead/MRC_RH9956.74UniSTS
RH78135  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38988,449,853 - 88,449,974UniSTSGRCm38
MGSCv37988,344,691 - 88,344,812UniSTSGRCm37
Celera985,476,271 - 85,476,392UniSTS
Cytogenetic Map9E3.2UniSTS
fj44g04.x1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38988,456,202 - 88,456,336UniSTSGRCm38
MGSCv37988,351,040 - 88,351,174UniSTSGRCm37
Celera985,482,605 - 85,482,739UniSTS
Cytogenetic Map9E3.2UniSTS
RH16146  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38988,462,291 - 88,463,008UniSTSGRCm38
MGSCv37988,357,129 - 88,357,846UniSTSGRCm37
Celera985,488,710 - 85,489,427UniSTS
Cytogenetic Map9E3.2UniSTS
Syncrip  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9E3.2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95465267888652678Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95653182690531973Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95911710593117252Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95911710593117252Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95946266493462846Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95946266493462846Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95946266493462846Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96224248596242599Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96513390995640755Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96936046598819654Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976117105101528921Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:9409
Count of miRNA genes:945
Interacting mature miRNAs:1417
Transcripts:ENSMUST00000069221, ENSMUST00000172508, ENSMUST00000172828, ENSMUST00000173405, ENSMUST00000173801, ENSMUST00000174145, ENSMUST00000174269, ENSMUST00000174282, ENSMUST00000174361, ENSMUST00000174391, ENSMUST00000174688
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001284328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001311113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB035725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF093821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF408434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ559204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU505018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY234240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN529994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV562339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000069221   ⟹   ENSMUSP00000063744
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl988,447,009 - 88,482,559 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172508   ⟹   ENSMUSP00000133292
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl988,479,662 - 88,482,574 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172828   ⟹   ENSMUSP00000133829
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl988,453,938 - 88,482,149 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173405   ⟹   ENSMUSP00000133343
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl988,476,866 - 88,481,169 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173801   ⟹   ENSMUSP00000133649
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl988,455,578 - 88,482,555 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174145
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl988,464,601 - 88,480,744 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174269   ⟹   ENSMUSP00000134506
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl988,452,640 - 88,482,131 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174282   ⟹   ENSMUSP00000134071
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl988,452,689 - 88,482,196 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174361   ⟹   ENSMUSP00000134722
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl988,456,138 - 88,480,753 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174391   ⟹   ENSMUSP00000134342
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl988,449,731 - 88,482,248 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174688   ⟹   ENSMUSP00000133716
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl988,452,437 - 88,480,765 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187770
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl988,478,723 - 88,481,224 (-)Ensembl
RefSeq Acc Id: NM_001284328   ⟹   NP_001271257
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,331,417 - 88,364,450 (-)NCBI
GRCm38988,449,364 - 88,482,397 (-)NCBI
Celera985,475,782 - 85,508,831 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001311113   ⟹   NP_001298042
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,331,417 - 88,364,450 (-)NCBI
GRCm38988,449,364 - 88,482,397 (-)NCBI
Sequence:
RefSeq Acc Id: NM_019666   ⟹   NP_062640
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,337,635 - 88,364,450 (-)NCBI
GRCm38988,455,582 - 88,482,397 (-)NCBI
MGSCv37988,344,576 - 88,377,235 (-)RGD
Celera985,475,782 - 85,508,831 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_019796   ⟹   NP_062770
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,331,417 - 88,364,450 (-)NCBI
GRCm38988,449,364 - 88,482,397 (-)NCBI
MGSCv37988,344,576 - 88,377,235 (-)RGD
Celera985,475,782 - 85,508,831 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511293   ⟹   XP_006511356
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,331,789 - 88,364,645 (-)NCBI
GRCm38988,449,736 - 88,482,568 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511294   ⟹   XP_006511357
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,338,191 - 88,364,644 (-)NCBI
GRCm38988,456,138 - 88,482,591 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_062770   ⟸   NM_019796
- Peptide Label: isoform 2
- UniProtKB: Q7TMK9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_062640   ⟸   NM_019666
- Peptide Label: isoform 1
- UniProtKB: Q7TMK9 (UniProtKB/Swiss-Prot),   Q3TRV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001271257   ⟸   NM_001284328
- Peptide Label: isoform 3
- UniProtKB: Q7TMK9 (UniProtKB/Swiss-Prot),   A0A0R4J259 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511356   ⟸   XM_006511293
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511357   ⟸   XM_006511294
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001298042   ⟸   NM_001311113
- Peptide Label: isoform 4
- UniProtKB: Q7TMK9 (UniProtKB/Swiss-Prot),   G3UZ48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000133829   ⟸   ENSMUST00000172828
RefSeq Acc Id: ENSMUSP00000133292   ⟸   ENSMUST00000172508
RefSeq Acc Id: ENSMUSP00000133716   ⟸   ENSMUST00000174688
RefSeq Acc Id: ENSMUSP00000134506   ⟸   ENSMUST00000174269
RefSeq Acc Id: ENSMUSP00000134071   ⟸   ENSMUST00000174282
RefSeq Acc Id: ENSMUSP00000134342   ⟸   ENSMUST00000174391
RefSeq Acc Id: ENSMUSP00000134722   ⟸   ENSMUST00000174361
RefSeq Acc Id: ENSMUSP00000133343   ⟸   ENSMUST00000173405
RefSeq Acc Id: ENSMUSP00000133649   ⟸   ENSMUST00000173801
RefSeq Acc Id: ENSMUSP00000063744   ⟸   ENSMUST00000069221
Protein Domains
hnRNP_Q_AcD   RRM

Promoters
RGD ID:6848482
Promoter ID:MM_ACW:51518
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:SYNCRIPANDSNX14.JSEP07,   SYNCRIPANDSNX14.LSEP07,   SYNCRIPANDSNX14.QSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36988,376,166 - 88,376,666 (-)MPROMDB
RGD ID:6845225
Promoter ID:MM_KWN:58300
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_019666,   NM_019796,   UC009QYP.1,   UC009QYQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36988,377,241 - 88,378,177 (-)MPROMDB
RGD ID:8670384
Promoter ID:EPDNEW_M13222
Type:initiation region
Name:Syncrip_1
Description:Mus musculus synaptotagmin binding, cytoplasmic RNA interactingprotein , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38988,482,195 - 88,482,255EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1891690 AgrOrtholog
Ensembl Genes ENSMUSG00000032423 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000063744 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000133292 UniProtKB/TrEMBL
  ENSMUSP00000133343 UniProtKB/TrEMBL
  ENSMUSP00000133649 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000133716 UniProtKB/TrEMBL
  ENSMUSP00000133829 UniProtKB/TrEMBL
  ENSMUSP00000134071 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000134342 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000134506 UniProtKB/TrEMBL
  ENSMUSP00000134722 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000069221 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000172508 UniProtKB/TrEMBL
  ENSMUST00000172828 UniProtKB/TrEMBL
  ENSMUST00000173405 UniProtKB/TrEMBL
  ENSMUST00000173801 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000174269 UniProtKB/TrEMBL
  ENSMUST00000174282 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000174361 UniProtKB/TrEMBL
  ENSMUST00000174391 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000174688 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro hnRNP_Q_AcD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HnRNP_R/Q_splicing_fac UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  hnRNPQ_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  hnRNPQ_RRM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1891690 ENTREZGENE
NCBI Gene 56403 ENTREZGENE
Pfam hnRNP_Q_AcD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Syncrip PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs hnRNP-R-Q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J259 ENTREZGENE, UniProtKB/TrEMBL
  G3UWM1_MOUSE UniProtKB/TrEMBL
  G3UXJ6_MOUSE UniProtKB/TrEMBL
  G3UXU5_MOUSE UniProtKB/TrEMBL
  G3UZ48 ENTREZGENE, UniProtKB/TrEMBL
  G3UZI2_MOUSE UniProtKB/TrEMBL
  G3V018_MOUSE UniProtKB/TrEMBL
  G3XA76_MOUSE UniProtKB/TrEMBL
  HNRPQ_MOUSE UniProtKB/Swiss-Prot
  Q3TRV3 ENTREZGENE, UniProtKB/TrEMBL
  Q7TMK9 ENTREZGENE
UniProt Secondary O88991 UniProtKB/Swiss-Prot
  Q2YDV8 UniProtKB/Swiss-Prot
  Q68ED6 UniProtKB/Swiss-Prot
  Q80YV6 UniProtKB/Swiss-Prot
  Q8BGP1 UniProtKB/Swiss-Prot
  Q8C5K6 UniProtKB/Swiss-Prot
  Q8CGC2 UniProtKB/Swiss-Prot
  Q91ZR0 UniProtKB/Swiss-Prot
  Q99KU9 UniProtKB/Swiss-Prot
  Q9QYF4 UniProtKB/Swiss-Prot