GMPPB (GDP-mannose pyrophosphorylase B) - Rat Genome Database

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Gene: GMPPB (GDP-mannose pyrophosphorylase B) Chlorocebus sabaeus
Analyze
Symbol: GMPPB
Name: GDP-mannose pyrophosphorylase B
RGD ID: 18623141
Description: ENCODES a protein that exhibits GTP binding (inferred); mannose-1-phosphate guanylyltransferase (GTP) activity (inferred); nucleotidyltransferase activity (inferred); INVOLVED IN GDP-mannose biosynthetic process (inferred); protein glycosylation (inferred); translation (inferred); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2T (ortholog); congenital muscular dystrophy-dystroglycanopathy A14 (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mannose-1-phosphate guanyltransferase beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,116,497 - 11,118,980 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,116,752 - 11,118,926 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,881,479 - 155,885,552 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GMPPB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,116,497 - 11,118,980 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,116,752 - 11,118,926 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,881,479 - 155,885,552 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GMPPB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,719,916 - 49,723,951 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,716,844 - 49,723,973 (-)EnsemblGRCh38hg38GRCh38
GRCh37349,757,349 - 49,761,384 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,733,936 - 49,736,388 (-)NCBINCBI36Build 36hg18NCBI36
Celera349,723,623 - 49,726,075 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,817,885 - 49,820,383 (-)NCBIHuRef
CHM1_1349,710,967 - 49,713,465 (-)NCBICHM1_1
T2T-CHM13v2.0349,749,202 - 49,753,237 (-)NCBIT2T-CHM13v2.0
Gmppb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,926,490 - 107,929,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,926,441 - 107,930,000 (+)EnsemblGRCm39 Ensembl
GRCm389108,049,239 - 108,051,923 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,049,242 - 108,052,801 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,951,621 - 107,954,267 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,907,410 - 107,909,802 (+)NCBIMGSCv36mm8
Celera9107,659,146 - 107,661,786 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map959.07NCBI
Gmppb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,616,029 - 117,622,866 (+)NCBIGRCr8
mRatBN7.28108,737,429 - 108,740,437 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,693,060 - 108,767,286 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,364,088 - 114,366,720 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,563,412 - 112,566,044 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,406,052 - 110,408,684 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,826,251 - 116,856,159 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,826,680 - 116,856,159 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,180,562 - 116,210,240 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,317,165 - 113,346,646 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8108,042,518 - 108,071,499 (+)NCBICelera
Cytogenetic Map8q32NCBI
Gmppb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,622,605 - 1,624,900 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,622,605 - 1,624,900 (-)NCBIChiLan1.0ChiLan1.0
GMPPB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,708,098 - 49,710,630 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,712,872 - 49,715,115 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,653,638 - 49,656,135 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,889,479 - 50,891,969 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,889,479 - 50,891,969 (-)Ensemblpanpan1.1panPan2
GMPPB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,550,799 - 39,553,045 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,550,799 - 39,553,045 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,471,723 - 39,473,969 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,908,319 - 39,910,564 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,908,072 - 39,911,799 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,275,391 - 39,277,636 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,678,760 - 39,681,006 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,958,590 - 39,960,836 (+)NCBIUU_Cfam_GSD_1.0
Gmppb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,574,309 - 64,577,997 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,336,002 - 1,338,400 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,336,002 - 1,338,615 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GMPPB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,246,466 - 32,249,619 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1 Ensembl1332,248,268 - 32,253,155 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,246,471 - 32,253,162 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,425,664 - 35,432,367 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Gmppb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,645,768 - 3,648,165 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,645,768 - 3,648,157 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 33 32
Low 3 20 28
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000012682   ⟹   ENSCSAP00000010712
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2211,116,752 - 11,118,926 (-)Ensembl
RefSeq Acc Id: XM_007984246   ⟹   XP_007982437
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12211,116,497 - 11,118,980 (-)NCBI
Vero_WHO_p1.0NW_023666041155,881,479 - 155,885,552 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007984247   ⟹   XP_007982438
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12211,116,497 - 11,118,975 (-)NCBI
Vero_WHO_p1.0NW_023666041155,881,479 - 155,885,551 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007982437 (Get FASTA)   NCBI Sequence Viewer  
  XP_007982438 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010712
  ENSCSAP00000010712.1
RefSeq Acc Id: XP_007982437   ⟸   XM_007984246
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RQ23 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007982438   ⟸   XM_007984247
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000010712   ⟸   ENSCSAT00000012682


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014596 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012682.1 UniProtKB/TrEMBL
Gene3D-CATH Hexapeptide repeat proteins UniProtKB/TrEMBL
InterPro GMPPB_N UniProtKB/TrEMBL
  Hexapep UniProtKB/TrEMBL
  Hexapep_transf_CS UniProtKB/TrEMBL
  NTP_transferase_dom UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Trimer_LpxA-like_sf UniProtKB/TrEMBL
KEGG Report csab:103227639 UniProtKB/TrEMBL
NCBI Gene GMPPB ENTREZGENE
PANTHER MANNOSE-1-PHOSPHATE GUANYLTRANSFERASE BETA UniProtKB/TrEMBL
  SUGAR-1-PHOSPHATE GUANYL TRANSFERASE UniProtKB/TrEMBL
Pfam Hexapep UniProtKB/TrEMBL
  NTP_transferase UniProtKB/TrEMBL
PROSITE HEXAPEP_TRANSFERASES UniProtKB/TrEMBL
Superfamily-SCOP SSF51161 UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt A0A0D9RQ23 ENTREZGENE, UniProtKB/TrEMBL