Symbol:
NFIX
Name:
nuclear factor I X
RGD ID:
18580903
Description:
ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN astrocyte differentiation (ortholog); atrioventricular canal morphogenesis (ortholog); bone mineralization (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
nuclear factor 1 X-type
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 6 11,705,323 - 11,778,943 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 6 11,706,060 - 11,776,083 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666074 8,003,657 - 8,106,509 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
NFIX Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 6 11,705,323 - 11,778,943 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 6 11,706,060 - 11,776,083 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666074 8,003,657 - 8,106,509 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
NFIX Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 19 12,995,475 - 13,098,796 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 19 12,995,475 - 13,098,796 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 19 13,106,289 - 13,209,610 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 19 12,967,584 - 13,070,610 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 19 12,967,583 - 13,070,610 NCBI Celera 19 12,996,993 - 13,100,014 (+) NCBI Celera Cytogenetic Map 19 p13.13 NCBI HuRef 19 12,707,303 - 12,782,249 (+) NCBI HuRef CHM1_1 19 13,107,626 - 13,210,624 (+) NCBI CHM1_1 T2T-CHM13v2.0 19 13,120,686 - 13,224,010 (+) NCBI T2T-CHM13v2.0
Nfix Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 85,431,341 - 85,527,086 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 8 85,426,505 - 85,526,973 (-) Ensembl GRCm39 Ensembl GRCm38 8 84,704,712 - 84,801,238 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 84,699,876 - 84,800,344 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 8 87,231,498 - 87,324,239 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 8 87,598,719 - 87,690,245 (-) NCBI MGSCv36 mm8 Celera 8 89,007,669 - 89,082,215 (-) NCBI Celera Cytogenetic Map 8 C3 NCBI cM Map 8 41.02 NCBI
Nfix Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 19 40,259,873 - 40,356,966 (+) NCBI GRCr8 mRatBN7.2 19 23,355,388 - 23,450,360 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 19 23,355,498 - 23,448,265 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 19 30,178,323 - 30,271,128 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 19 30,832,693 - 30,925,505 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 19 33,055,373 - 33,148,200 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 19 25,818,640 - 25,914,777 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 19 25,821,780 - 25,914,696 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 19 36,794,504 - 36,890,430 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 25,018,352 - 25,111,367 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 19 25,023,177 - 25,097,311 (+) NCBI Celera 19 22,941,014 - 23,001,968 (+) NCBI Celera Cytogenetic Map 19 q11 NCBI
Nfix Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955415 32,055,375 - 32,117,833 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955415 32,055,926 - 32,121,611 (+) NCBI ChiLan1.0 ChiLan1.0
NFIX Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 20 17,924,044 - 18,027,343 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 19 16,924,649 - 17,027,957 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 19 12,557,020 - 12,660,316 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 19 13,315,482 - 13,402,406 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 19 13,327,690 - 13,402,406 (+) Ensembl panpan1.1 panPan2
NFIX Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 20 49,117,087 - 49,187,023 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 20 49,117,943 - 49,214,788 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 20 48,989,635 - 49,094,158 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 20 49,634,123 - 49,738,501 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 20 49,635,376 - 49,703,891 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 20 48,845,676 - 48,949,981 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 20 49,272,022 - 49,376,246 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 20 49,514,448 - 49,619,003 (-) NCBI UU_Cfam_GSD_1.0
Nfix Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405118 208,221,747 - 208,289,349 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936659 2,065,458 - 2,136,889 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936659 2,065,410 - 2,136,898 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
NFIX Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 2 65,954,811 - 66,056,567 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 2 65,954,808 - 66,056,591 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 2 66,321,736 - 66,402,215 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
Nfix
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSCSAT00000004552 ⟹ ENSCSAP00000002800
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 Ensembl 6 11,706,060 - 11,776,083 (+) Ensembl
RefSeq Acc Id:
XM_007995462 ⟹ XP_007993653
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 6 11,706,333 - 11,778,785 (+) NCBI Vero_WHO_p1.0 NW_023666074 8,003,657 - 8,077,245 (-) NCBI
Sequence:
ATTACTGTGATTAACATTAGTATTGGTGTCGATAACAAAGCTGAAATCACATATTTAGGATTTAGGTCTGATTAAAAAATGCTGGGGTGGATGTTCCAACTGGATCAGGAGAAAAGAAAATGAAAACA
hide sequence
RefSeq Acc Id:
XM_007995463 ⟹ XP_007993654
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 6 11,706,676 - 11,778,785 (+) NCBI Vero_WHO_p1.0 NW_023666074 8,003,657 - 8,077,245 (-) NCBI
Sequence:
ATGGGCGCGACAGAGCCTGGCGGGGATACCAGCAGCGTGTGTGTGTGGACGGCAACGTTGTCTGTGCGCGTGTGTGATGAGTTCCACCCGTTCATCGAGGCACTGCTGCCTCACGTCCGCGCTTTCTC
hide sequence
RefSeq Acc Id:
XM_007995464 ⟹ XP_007993655
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 6 11,706,617 - 11,778,943 (+) NCBI Vero_WHO_p1.0 NW_023666074 8,003,657 - 8,077,245 (-) NCBI
Sequence:
GACATTGCGCCGGGGCGAGCTGACAGGAGTTCACGGCTGCGATAGAACATGGAGATGTCATGGG
hide sequence
RefSeq Acc Id:
XM_007995465 ⟹ XP_007993656
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 6 11,706,510 - 11,778,943 (+) NCBI Vero_WHO_p1.0 NW_023666074 8,003,657 - 8,077,245 (-) NCBI
Sequence:
ATGTCATTTTCTCTCTTCTTGGGGGCGGCCAAAAATCGACCGGTGTCGGGGACCAGAGGCGGCC
hide sequence
RefSeq Acc Id:
XM_007995466 ⟹ XP_007993657
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 6 11,705,323 - 11,778,785 (+) NCBI Vero_WHO_p1.0 NW_023666074 8,003,657 - 8,078,326 (-) NCBI
Sequence:
CTCGATCTCTCCCTCCCCCCGTTCTTCCTTTCCTCCCTCCCTCGCTCCCTCTCTCTCTTTTGCACGCGTCTGCCAGCAACGGTCTGCAGCCGGTCAGAACTCGTCCTCTTCCCCGGGAATCTGCGAGC
hide sequence
RefSeq Acc Id:
XM_007995467 ⟹ XP_007993658
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 6 11,706,510 - 11,778,943 (+) NCBI Vero_WHO_p1.0 NW_023666074 8,003,657 - 8,077,245 (-) NCBI
Sequence:
ATGTCATTTTCTCTCTTCTTGGGGGCGGCCAAAAATCGACCGGTGTCGGGGACCAGAGGCGGCC
hide sequence
RefSeq Acc Id:
XM_007995468 ⟹ XP_007993659
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 6 11,706,510 - 11,778,785 (+) NCBI Vero_WHO_p1.0 NW_023666074 8,003,657 - 8,077,245 (-) NCBI
Sequence:
ATGTCATTTTCTCTCTTCTTGGGGGCGGCCAAAAATCGACCGGTGTCGGGGACCAGAGGCGGCC
hide sequence
RefSeq Acc Id:
XM_007995469 ⟹ XP_007993660
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 6 11,706,833 - 11,778,943 (+) NCBI Vero_WHO_p1.0 NW_023666074 8,003,657 - 8,076,821 (-) NCBI
Sequence:
GGAGCAAGTGGCTGGCGAAGCTGGTGGTGGCTTCAAACCACACTTTTGTAGAACAATTGCAAGAGAAAATTGTTGGGGGGAGGGAGGAGGAGGAGAAGGCGGTTTTCCTTGTGCCCCCCCTTCTAACG
hide sequence
RefSeq Acc Id:
XM_007995470 ⟹ XP_007993661
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 6 11,705,344 - 11,778,943 (+) NCBI Vero_WHO_p1.0 NW_023666074 8,003,657 - 8,078,326 (-) NCBI
Sequence:
TTCTTCCTTTCCTCCCTCCCTCGCTCCCTCTCTCTCTTTTGCACGCGTCTGCCAGCAACGGTCT
hide sequence
RefSeq Acc Id:
XM_037992066 ⟹ XP_037847994
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source Vero_WHO_p1.0 NW_023666074 8,003,657 - 8,106,509 (-) NCBI
RefSeq Acc Id:
XP_007993657 ⟸ XM_007995466
- Peptide Label:
isoform X6
- UniProtKB:
A0A0D9R2G1 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_007993661 ⟸ XM_007995470
- Peptide Label:
isoform X10
RefSeq Acc Id:
XP_007993653 ⟸ XM_007995462
- Peptide Label:
isoform X1
RefSeq Acc Id:
XP_007993656 ⟸ XM_007995465
- Peptide Label:
isoform X5
RefSeq Acc Id:
XP_007993658 ⟸ XM_007995467
- Peptide Label:
isoform X7
RefSeq Acc Id:
XP_007993659 ⟸ XM_007995468
- Peptide Label:
isoform X8
RefSeq Acc Id:
XP_007993655 ⟸ XM_007995464
- Peptide Label:
isoform X3
RefSeq Acc Id:
XP_007993654 ⟸ XM_007995463
- Peptide Label:
isoform X2
RefSeq Acc Id:
XP_007993660 ⟸ XM_007995469
- Peptide Label:
isoform X9
Ensembl Acc Id:
ENSCSAP00000002800 ⟸ ENSCSAT00000004552
RefSeq Acc Id:
XP_037847994 ⟸ XM_037992066
- Peptide Label:
isoform X4
