TRIM6 (tripartite motif containing 6) - Rat Genome Database

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Gene: TRIM6 (tripartite motif containing 6) Chlorocebus sabaeus
Analyze
Symbol: TRIM6
Name: tripartite motif containing 6
RGD ID: 18551745
Description: ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); identical protein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to interferon-beta (ortholog); cellular response to virus (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tripartite motif-containing protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,136,690 - 61,147,911 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604364,854,397 - 64,870,606 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleus  (ISO)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TRIM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,136,690 - 61,147,911 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604364,854,397 - 64,870,606 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TRIM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,596,111 - 5,612,952 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,596,109 - 5,612,958 (+)EnsemblGRCh38hg38GRCh38
GRCh37115,617,341 - 5,634,182 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,573,923 - 5,590,764 (+)NCBINCBI36Build 36hg18NCBI36
Build 34115,573,922 - 5,590,764NCBI
Celera115,735,961 - 5,753,014 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef115,275,183 - 5,292,762 (+)NCBIHuRef
CHM1_1115,616,290 - 5,633,137 (+)NCBICHM1_1
T2T-CHM13v2.0115,655,518 - 5,672,393 (+)NCBIT2T-CHM13v2.0
Trim6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397103,868,002 - 103,884,359 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7103,868,000 - 103,884,359 (+)EnsemblGRCm39 Ensembl
GRCm387104,218,795 - 104,235,152 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7104,218,793 - 104,235,152 (+)EnsemblGRCm38mm10GRCm38
MGSCv377111,367,309 - 111,383,666 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36794,018,892 - 94,035,354 (+)NCBIMGSCv36mm8
MGSCv367104,092,637 - 104,108,973 (+)NCBIMGSCv36mm8
Celera7104,604,665 - 104,619,682 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.55NCBI
Trim6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81168,095,619 - 168,108,809 (+)NCBIGRCr8
mRatBN7.21158,683,746 - 158,696,936 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1158,683,746 - 158,696,914 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1166,671,350 - 166,684,551 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01173,851,364 - 173,864,566 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01166,744,204 - 166,757,392 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01169,410,084 - 169,423,305 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1169,410,115 - 169,423,283 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,550,133 - 175,563,346 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41162,059,220 - 162,094,672 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11162,180,654 - 162,187,805 (+)NCBI
Celera1156,680,750 - 156,687,600 (+)NCBICelera
Cytogenetic Map1q32NCBI
Trim6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541421,481,129 - 21,514,548 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541421,495,593 - 21,513,703 (+)NCBIChiLan1.0ChiLan1.0
TRIM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v298,034,820 - 8,052,099 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1117,992,489 - 8,009,781 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,731,256 - 5,748,057 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1115,412,952 - 5,460,537 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl115,413,491 - 5,460,532 (+)Ensemblpanpan1.1panPan2
TRIM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,595,887 - 28,611,562 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2128,595,448 - 28,611,124 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2128,383,550 - 28,390,775 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02129,419,425 - 29,434,660 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2129,419,208 - 29,434,659 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12128,735,956 - 28,743,169 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02128,941,372 - 28,948,584 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02129,076,932 - 29,084,154 (+)NCBIUU_Cfam_GSD_1.0
Trim6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494757,485,230 - 57,493,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493709724,911 - 31,681 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493709723,695 - 31,673 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl94,196,921 - 4,218,415 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.194,197,922 - 4,204,688 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.294,681,682 - 4,696,722 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Trim6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248177,045,228 - 7,053,525 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248177,029,104 - 7,053,447 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038005536   ⟹   XP_037861464
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604364,854,397 - 64,870,606 (+)NCBI
RefSeq Acc Id: XM_038005537   ⟹   XP_037861465
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604364,860,957 - 64,870,606 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037861464 (Get FASTA)   NCBI Sequence Viewer  
  XP_037861465 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_037861464   ⟸   XM_038005536
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037861465   ⟸   XM_038005537
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene TRIM6 ENTREZGENE